Fluorine in PDB 1w7j: Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor

The structure of Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor, PDB code: 1w7j was solved by P.-D.Coureux, H.L.Sweeney, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20 / 2
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	169.684, 95.988, 84.306, 90.00, 96.11, 90.00
R / Rfree (%)	19.4 / 22.4

The structure of Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor (pdb code 1w7j). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor, PDB code: 1w7j:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor within 5.0Å range: probe atom residue distance (Å) B Occ A:F1795 b:15.0 occ:1.00 F1 A:BEF1795 0.0 15.0 1.0 BE A:BEF1795 1.7 17.1 1.0 NZ A:LYS169 2.7 12.6 1.0 F2 A:BEF1795 2.7 14.4 1.0 O1B A:ADP1794 2.7 10.9 1.0 F3 A:BEF1795 2.8 17.0 1.0 O A:HOH2111 2.9 20.1 1.0 CA A:SER165 3.2 14.0 1.0 CE A:LYS169 3.5 13.4 1.0 CB A:SER165 3.6 14.0 1.0 PB A:ADP1794 3.7 12.1 1.0 N A:SER165 3.9 14.2 1.0 O A:HOH2277 3.9 11.3 1.0 OG A:SER165 3.9 14.2 1.0 O3B A:ADP1794 3.9 12.6 1.0 O2B A:ADP1794 4.0 11.3 1.0 O A:GLU164 4.2 13.1 1.0 MG A:MG1793 4.2 12.1 1.0 N A:GLY166 4.2 13.9 1.0 C A:GLU164 4.3 14.1 1.0 C A:SER165 4.3 14.4 1.0 OG A:SER217 4.6 12.1 1.0 O A:SER218 4.7 13.1 1.0 O A:HOH2152 4.8 29.1 1.0 O A:HOH2150 4.9 30.4 1.0 N A:SER218 5.0 12.9 1.0 O A:GLY163 5.0 12.9 1.0 CD A:LYS169 5.0 12.4 1.0

Fluorine binding site 2 out of 3 in the Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor within 5.0Å range: probe atom residue distance (Å) B Occ A:F1795 b:14.4 occ:1.00 F2 A:BEF1795 0.0 14.4 1.0 BE A:BEF1795 1.7 17.1 1.0 MG A:MG1793 2.0 12.1 1.0 O1B A:ADP1794 2.7 10.9 1.0 F1 A:BEF1795 2.7 15.0 1.0 F3 A:BEF1795 2.7 17.0 1.0 O A:HOH2277 2.8 11.3 1.0 O2B A:ADP1794 2.8 11.3 1.0 OG A:SER218 2.9 12.1 1.0 N A:SER218 2.9 12.9 1.0 O A:HOH2517 2.9 11.0 1.0 CB A:SER218 3.1 12.8 1.0 PB A:ADP1794 3.3 12.1 1.0 CA A:SER218 3.5 12.8 1.0 C A:SER217 3.9 12.9 1.0 O A:SER218 4.0 13.1 1.0 CA A:SER217 4.0 12.6 1.0 OG1 A:THR170 4.0 11.5 1.0 ND2 A:ASN214 4.0 13.1 1.0 OG A:SER217 4.2 12.1 1.0 C A:SER218 4.2 13.2 1.0 O3B A:ADP1794 4.4 12.6 1.0 O3A A:ADP1794 4.5 11.6 1.0 O A:ASN216 4.5 13.0 1.0 NZ A:LYS169 4.5 12.6 1.0 O2A A:ADP1794 4.7 12.8 1.0 CB A:SER217 4.7 12.7 1.0 CE A:LYS169 4.8 13.4 1.0 O A:HOH2152 4.8 29.1 1.0 CB A:THR170 5.0 13.3 1.0

Fluorine binding site 3 out of 3 in the Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Myosin V Motor with Essential Light Chain + Adp-Befx - Near Rigor within 5.0Å range: probe atom residue distance (Å) B Occ A:F1795 b:17.0 occ:1.00 F3 A:BEF1795 0.0 17.0 1.0 BE A:BEF1795 1.7 17.1 1.0 OG A:SER217 2.5 12.1 1.0 OG A:SER165 2.6 14.2 1.0 F2 A:BEF1795 2.7 14.4 1.0 F1 A:BEF1795 2.8 15.0 1.0 O1B A:ADP1794 2.8 10.9 1.0 ND2 A:ASN214 3.1 13.1 1.0 CB A:SER217 3.2 12.7 1.0 CA A:SER217 3.2 12.6 1.0 CB A:SER165 3.4 14.0 1.0 CA A:SER165 3.6 14.0 1.0 N A:SER218 3.7 12.9 1.0 CB A:ASN214 3.8 15.2 1.0 N A:GLY166 3.8 13.9 1.0 CG A:ASN214 3.9 14.8 1.0 C A:SER217 4.0 12.9 1.0 O A:HOH2108 4.1 23.0 1.0 C A:SER165 4.1 14.4 1.0 PB A:ADP1794 4.2 12.1 1.0 N A:SER217 4.4 12.8 1.0 MG A:MG1793 4.6 12.1 1.0 O A:SER218 4.6 13.1 1.0 NH1 A:ARG219 4.6 19.6 1.0 O2B A:ADP1794 4.6 11.3 1.0 O A:HOH2517 4.6 11.0 1.0 CA A:GLY166 4.8 13.8 1.0 CA A:SER218 4.9 12.8 1.0 O3A A:ADP1794 4.9 11.6 1.0 O A:ASN216 4.9 13.0 1.0 N A:SER165 5.0 14.2 1.0

P.-D.Coureux, H.L.Sweeney, A.Houdusse. Three Myosin V Structures Delineate Essential Features of Chemo-Mechanical Transduction Embo J. V. 23 4527 2004.
ISSN: ISSN 0261-4189
PubMed: 15510214
DOI: 10.1038/SJ.EMBOJ.7600458