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Fluorine in PDB 1w9j: Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4

Enzymatic activity of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4

All present enzymatic activity of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4:
3.6.4.1;

Protein crystallography data

The structure of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4, PDB code: 1w9j was solved by C.A.Morris, P.-D.Coureux, A.L.Wells, A.Houdusse, H.L.Sweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.70 / 2.0
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 88.607, 151.494, 154.163, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.5

Other elements in 1w9j:

The structure of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4 (pdb code 1w9j). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4, PDB code: 1w9j:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 1w9j

Go back to Fluorine Binding Sites List in 1w9j
Fluorine binding site 1 out of 4 in the Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1758

b:26.1
occ:1.00
 F1 A:ALF1758 0.0 26.1 1.0
AL A:ALF1758 1.8 25.9 1.0
O A:HOH2150 2.4 28.2 1.0
F3 A:ALF1758 2.4 28.9 1.0
F2 A:ALF1758 2.5 24.9 1.0
O3B A:ADP1757 2.7 25.1 1.0
CA A:SER181 2.8 27.4 1.0
OG A:SER181 2.9 28.6 1.0
N A:GLY457 3.0 25.4 1.0
O A:HOH2232 3.2 27.9 1.0
CB A:SER181 3.2 27.3 1.0
CA A:GLY457 3.3 26.1 1.0
NZ A:LYS185 3.4 23.7 1.0
F4 A:ALF1758 3.5 26.0 1.0
N A:GLY182 3.6 25.7 1.0
C A:SER181 3.7 26.6 1.0
N A:SER181 3.8 27.4 1.0
O A:GLY457 4.0 25.9 1.0
C A:GLY457 4.0 25.7 1.0
PB A:ADP1757 4.0 27.6 1.0
C A:TYR456 4.2 26.7 1.0
O A:GLU180 4.3 27.4 1.0
CE A:LYS185 4.3 26.4 1.0
C A:GLU180 4.3 27.5 1.0
O1B A:ADP1757 4.5 26.1 1.0
CA A:TYR456 4.6 26.9 1.0
OG A:SER236 4.7 25.9 1.0
O2B A:ADP1757 4.9 27.9 1.0
CA A:GLY182 4.9 26.1 1.0
O A:SER181 4.9 26.4 1.0
O A:HOH2128 5.0 30.3 1.0

Fluorine binding site 2 out of 4 in 1w9j

Go back to Fluorine Binding Sites List in 1w9j
Fluorine binding site 2 out of 4 in the Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1758

b:24.9
occ:1.00
 F2 A:ALF1758 0.0 24.9 1.0
AL A:ALF1758 1.8 25.9 1.0
O3B A:ADP1757 2.4 25.1 1.0
F1 A:ALF1758 2.5 26.1 1.0
F4 A:ALF1758 2.6 26.0 1.0
O A:HOH2150 2.7 28.2 1.0
OG A:SER236 2.9 25.9 1.0
ND2 A:ASN233 3.0 27.8 1.0
OG A:SER181 3.0 28.6 1.0
CB A:SER236 3.4 26.4 1.0
CA A:SER236 3.5 26.7 1.0
F3 A:ALF1758 3.6 28.9 1.0
CB A:ASN233 3.7 28.4 1.0
N A:GLY182 3.7 25.7 1.0
CG A:ASN233 3.8 28.2 1.0
PB A:ADP1757 3.9 27.6 1.0
N A:SER237 4.0 27.1 1.0
CB A:SER181 4.1 27.3 1.0
CA A:SER181 4.2 27.4 1.0
C A:SER236 4.2 26.4 1.0
O A:HOH2232 4.3 27.9 1.0
O A:HOH2128 4.3 30.3 1.0
C A:SER181 4.4 26.6 1.0
MG A:MG1756 4.4 24.9 1.0
O3A A:ADP1757 4.4 27.3 1.0
O2B A:ADP1757 4.5 27.9 1.0
CA A:GLY182 4.5 26.1 1.0
N A:SER236 4.6 27.1 1.0
O A:HOH2381 4.6 25.9 1.0
O A:SER237 4.7 27.2 1.0
O A:ASN235 5.0 27.9 1.0

Fluorine binding site 3 out of 4 in 1w9j

Go back to Fluorine Binding Sites List in 1w9j
Fluorine binding site 3 out of 4 in the Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1758

b:28.9
occ:1.00
 F3 A:ALF1758 0.0 28.9 1.0
AL A:ALF1758 1.8 25.9 1.0
F1 A:ALF1758 2.4 26.1 1.0
O A:HOH2150 2.5 28.2 1.0
F4 A:ALF1758 2.6 26.0 1.0
O A:HOH2230 2.7 24.2 1.0
O3B A:ADP1757 2.7 25.1 1.0
NZ A:LYS185 2.9 23.7 1.0
CE A:LYS185 2.9 26.4 1.0
N A:GLY457 3.0 25.4 1.0
PB A:ADP1757 3.2 27.6 1.0
O A:ILE455 3.4 28.5 1.0
MG A:MG1756 3.4 24.9 1.0
O2B A:ADP1757 3.4 27.9 1.0
F2 A:ALF1758 3.6 24.9 1.0
CA A:TYR456 3.6 26.9 1.0
C A:TYR456 3.7 26.7 1.0
O1B A:ADP1757 3.8 26.1 1.0
CA A:GLY457 3.8 26.1 1.0
C A:ILE455 4.3 28.3 1.0
N A:TYR456 4.4 28.3 1.0
CD A:LYS185 4.4 26.6 1.0
O A:HOH2232 4.5 27.9 1.0
CB A:TYR456 4.6 26.8 1.0
CB A:SER237 4.7 27.8 1.0
O3A A:ADP1757 4.7 27.3 1.0
OG A:SER237 4.7 26.5 1.0
OD1 A:ASP454 4.7 38.8 1.0
CB A:LYS185 4.8 27.8 1.0
O A:TYR456 4.8 26.9 1.0
CA A:SER181 5.0 27.4 1.0
CG A:LYS185 5.0 28.3 1.0
O A:SER237 5.0 27.2 1.0

Fluorine binding site 4 out of 4 in 1w9j

Go back to Fluorine Binding Sites List in 1w9j
Fluorine binding site 4 out of 4 in the Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Myosin II Dictyostelium Discoideum Motor Domain S456Y Bound with Mgadp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1758

b:26.0
occ:1.00
 F4 A:ALF1758 0.0 26.0 1.0
AL A:ALF1758 1.8 25.9 1.0
MG A:MG1756 1.9 24.9 1.0
F3 A:ALF1758 2.6 28.9 1.0
O3B A:ADP1757 2.6 25.1 1.0
F2 A:ALF1758 2.6 24.9 1.0
O A:HOH2150 2.7 28.2 1.0
O2B A:ADP1757 2.8 27.9 1.0
N A:SER237 2.9 27.1 1.0
O A:HOH2381 2.9 25.9 1.0
O A:HOH2230 3.0 24.2 1.0
OG A:SER237 3.0 26.5 1.0
PB A:ADP1757 3.2 27.6 1.0
CB A:SER237 3.2 27.8 1.0
F1 A:ALF1758 3.5 26.1 1.0
CA A:SER237 3.6 26.7 1.0
ND2 A:ASN233 3.8 27.8 1.0
C A:SER236 3.8 26.4 1.0
CA A:SER236 3.9 26.7 1.0
O A:SER237 4.0 27.2 1.0
O3A A:ADP1757 4.1 27.3 1.0
OG1 A:THR186 4.1 29.4 1.0
OG A:SER236 4.2 25.9 1.0
C A:SER237 4.3 27.0 1.0
O A:ASN235 4.4 27.9 1.0
O2A A:ADP1757 4.6 26.7 1.0
O1B A:ADP1757 4.6 26.1 1.0
CB A:SER236 4.6 26.4 1.0
CB A:THR186 5.0 30.0 1.0
O A:SER236 5.0 26.4 1.0
PA A:ADP1757 5.0 27.2 1.0

Reference:

C.A.Morris, P.-D.Coureux, A.L.Wells, A.Houdusse, H.L.Sweeney. Structure-Function Analysis of Myosin II Backdoor Mutants To Be Published.
Page generated: Wed Jul 31 13:13:38 2024

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