Fluorine in PDB 1z95: Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide
Protein crystallography data
The structure of Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide, PDB code: 1z95
was solved by
C.E.Bohl,
W.Gao,
D.D.Miller,
C.E.Bell,
J.T.Dalton,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.46 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.490,
66.470,
72.160,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.3 /
25.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide
(pdb code 1z95). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide, PDB code: 1z95:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 1z95
Go back to
Fluorine Binding Sites List in 1z95
Fluorine binding site 1 out
of 4 in the Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:37.3
occ:1.00
|
F18
|
A:198501
|
0.0
|
37.3
|
1.0
|
C18
|
A:198501
|
1.3
|
32.5
|
1.0
|
C19
|
A:198501
|
2.4
|
31.0
|
1.0
|
C17
|
A:198501
|
2.4
|
31.5
|
1.0
|
O
|
A:HOH101
|
2.9
|
23.1
|
1.0
|
C20
|
A:198501
|
3.6
|
29.1
|
1.0
|
C16
|
A:198501
|
3.6
|
30.9
|
1.0
|
CG2
|
A:ILE898
|
3.8
|
23.0
|
1.0
|
NE2
|
A:HIS874
|
3.8
|
21.3
|
1.0
|
O
|
A:GLN738
|
3.9
|
22.7
|
1.0
|
CG2
|
A:VAL903
|
4.0
|
24.1
|
1.0
|
CD2
|
A:HIS874
|
4.1
|
21.9
|
1.0
|
C15
|
A:198501
|
4.1
|
28.4
|
1.0
|
CD2
|
A:LEU741
|
4.3
|
20.7
|
1.0
|
CB
|
A:LEU741
|
4.3
|
22.3
|
1.0
|
N
|
A:MET742
|
4.3
|
20.6
|
1.0
|
CB
|
A:MET742
|
4.5
|
21.7
|
1.0
|
CG
|
A:LEU741
|
4.6
|
20.7
|
1.0
|
CE
|
A:MET742
|
4.8
|
21.1
|
1.0
|
CA
|
A:MET742
|
4.9
|
21.4
|
1.0
|
CB
|
A:ILE898
|
4.9
|
26.9
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 1z95
Go back to
Fluorine Binding Sites List in 1z95
Fluorine binding site 2 out
of 4 in the Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:28.5
occ:1.00
|
F7B
|
A:198501
|
0.0
|
28.5
|
1.0
|
C7
|
A:198501
|
1.3
|
28.2
|
1.0
|
F7C
|
A:198501
|
2.1
|
29.0
|
1.0
|
F7A
|
A:198501
|
2.1
|
27.5
|
1.0
|
C3
|
A:198501
|
2.3
|
24.6
|
1.0
|
C2
|
A:198501
|
3.2
|
23.5
|
1.0
|
N
|
A:VAL746
|
3.2
|
23.7
|
1.0
|
CB
|
A:MET745
|
3.2
|
25.1
|
1.0
|
C4
|
A:198501
|
3.3
|
24.6
|
1.0
|
C
|
A:MET745
|
3.3
|
24.3
|
1.0
|
CG2
|
A:VAL746
|
3.4
|
23.7
|
1.0
|
CA
|
A:VAL746
|
3.5
|
24.1
|
1.0
|
C8
|
A:198501
|
3.6
|
27.1
|
1.0
|
O
|
A:MET745
|
3.7
|
24.9
|
1.0
|
O
|
A:MET742
|
3.8
|
21.9
|
1.0
|
CA
|
A:MET745
|
3.9
|
23.8
|
1.0
|
CB
|
A:VAL746
|
4.1
|
24.5
|
1.0
|
N8
|
A:198501
|
4.1
|
23.0
|
1.0
|
SD
|
A:MET742
|
4.3
|
24.1
|
1.0
|
CE
|
A:MET745
|
4.4
|
28.6
|
1.0
|
C1
|
A:198501
|
4.4
|
26.7
|
1.0
|
C5
|
A:198501
|
4.5
|
24.6
|
1.0
|
CG
|
A:MET745
|
4.5
|
24.3
|
1.0
|
CD1
|
A:LEU873
|
4.6
|
25.3
|
1.0
|
SD
|
A:MET745
|
4.7
|
30.7
|
1.0
|
N
|
A:MET745
|
4.8
|
22.6
|
1.0
|
C
|
A:MET742
|
4.8
|
21.3
|
1.0
|
C
|
A:VAL746
|
4.9
|
23.1
|
1.0
|
C6
|
A:198501
|
5.0
|
26.0
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 1z95
Go back to
Fluorine Binding Sites List in 1z95
Fluorine binding site 3 out
of 4 in the Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:29.0
occ:1.00
|
F7C
|
A:198501
|
0.0
|
29.0
|
1.0
|
C7
|
A:198501
|
1.3
|
28.2
|
1.0
|
F7A
|
A:198501
|
2.1
|
27.5
|
1.0
|
F7B
|
A:198501
|
2.1
|
28.5
|
1.0
|
C3
|
A:198501
|
2.4
|
24.6
|
1.0
|
C8
|
A:198501
|
2.8
|
27.1
|
1.0
|
C4
|
A:198501
|
2.9
|
24.6
|
1.0
|
N8
|
A:198501
|
3.2
|
23.0
|
1.0
|
CE2
|
A:PHE764
|
3.5
|
24.7
|
1.0
|
CB
|
A:MET749
|
3.6
|
23.9
|
1.0
|
C2
|
A:198501
|
3.6
|
23.5
|
1.0
|
CE
|
A:MET749
|
3.6
|
32.4
|
1.0
|
CD2
|
A:PHE764
|
3.7
|
22.9
|
1.0
|
CG
|
A:MET749
|
3.7
|
27.6
|
1.0
|
O
|
A:MET745
|
3.8
|
24.9
|
1.0
|
CA
|
A:VAL746
|
4.0
|
24.1
|
1.0
|
C
|
A:MET745
|
4.1
|
24.3
|
1.0
|
N
|
A:VAL746
|
4.2
|
23.7
|
1.0
|
SD
|
A:MET787
|
4.2
|
29.5
|
1.0
|
C5
|
A:198501
|
4.3
|
24.6
|
1.0
|
CG2
|
A:VAL746
|
4.4
|
23.7
|
1.0
|
SD
|
A:MET749
|
4.5
|
31.6
|
1.0
|
CB
|
A:MET745
|
4.7
|
25.1
|
1.0
|
CZ
|
A:PHE764
|
4.7
|
24.9
|
1.0
|
C1
|
A:198501
|
4.8
|
26.7
|
1.0
|
CB
|
A:VAL746
|
4.8
|
24.5
|
1.0
|
CG
|
A:PHE764
|
5.0
|
25.4
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 1z95
Go back to
Fluorine Binding Sites List in 1z95
Fluorine binding site 4 out
of 4 in the Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of the Androgen Receptor Ligand-Binding Domain W741L Mutant Complex with R-Bicalutamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:27.5
occ:1.00
|
F7A
|
A:198501
|
0.0
|
27.5
|
1.0
|
C7
|
A:198501
|
1.3
|
28.2
|
1.0
|
F7C
|
A:198501
|
2.1
|
29.0
|
1.0
|
F7B
|
A:198501
|
2.1
|
28.5
|
1.0
|
C3
|
A:198501
|
2.4
|
24.6
|
1.0
|
C2
|
A:198501
|
2.8
|
23.5
|
1.0
|
CD1
|
A:LEU873
|
3.6
|
25.3
|
1.0
|
C4
|
A:198501
|
3.6
|
24.6
|
1.0
|
SD
|
A:MET787
|
3.8
|
29.5
|
1.0
|
CE2
|
A:PHE764
|
3.9
|
24.7
|
1.0
|
CG2
|
A:VAL746
|
3.9
|
23.7
|
1.0
|
C1
|
A:198501
|
4.2
|
26.7
|
1.0
|
C8
|
A:198501
|
4.2
|
27.1
|
1.0
|
O10
|
A:198501
|
4.3
|
27.9
|
1.0
|
CE
|
A:MET787
|
4.3
|
26.6
|
1.0
|
CD2
|
A:PHE764
|
4.5
|
22.9
|
1.0
|
SD
|
A:MET742
|
4.6
|
24.1
|
1.0
|
CD2
|
A:LEU873
|
4.7
|
25.0
|
1.0
|
CG
|
A:LEU873
|
4.7
|
20.1
|
1.0
|
C5
|
A:198501
|
4.8
|
24.6
|
1.0
|
CA
|
A:VAL746
|
4.8
|
24.1
|
1.0
|
CE
|
A:MET749
|
4.9
|
32.4
|
1.0
|
CZ
|
A:PHE764
|
4.9
|
24.9
|
1.0
|
N
|
A:VAL746
|
5.0
|
23.7
|
1.0
|
CB
|
A:VAL746
|
5.0
|
24.5
|
1.0
|
C6
|
A:198501
|
5.0
|
26.0
|
1.0
|
N8
|
A:198501
|
5.0
|
23.0
|
1.0
|
N9
|
A:198501
|
5.0
|
24.0
|
1.0
|
|
Reference:
C.E.Bohl,
W.Gao,
D.D.Miller,
C.E.Bell,
J.T.Dalton.
Structural Basis For Antagonism and Resistance of Bicalutamide in Prostate Cancer. Proc.Natl.Acad.Sci.Usa V. 102 6201 2005.
ISSN: ISSN 0027-8424
PubMed: 15833816
DOI: 10.1073/PNAS.0500381102
Page generated: Wed Jul 31 13:37:05 2024
|