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Fluorine in PDB 1zl3: Coupling of Active Site Motions and Rna Binding

Enzymatic activity of Coupling of Active Site Motions and Rna Binding

All present enzymatic activity of Coupling of Active Site Motions and Rna Binding:
4.2.1.70;

Protein crystallography data

The structure of Coupling of Active Site Motions and Rna Binding, PDB code: 1zl3 was solved by C.Hoang, C.S.Hamilton, E.G.Mueller, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.92 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.433, 40.753, 78.803, 90.00, 110.61, 90.00
R / Rfree (%) 20.2 / 26.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Coupling of Active Site Motions and Rna Binding (pdb code 1zl3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Coupling of Active Site Motions and Rna Binding, PDB code: 1zl3:

Fluorine binding site 1 out of 1 in 1zl3

Go back to Fluorine Binding Sites List in 1zl3
Fluorine binding site 1 out of 1 in the Coupling of Active Site Motions and Rna Binding


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Coupling of Active Site Motions and Rna Binding within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F410

b:65.4
occ:1.00
F B:UD5410 0.0 65.4 1.0
C5 B:UD5410 1.4 58.9 1.0
C6 B:UD5410 2.3 55.9 1.0
C4 B:UD5410 2.4 58.5 1.0
O4 B:UD5410 2.9 61.9 1.0
CG1 A:ILE180 3.2 37.9 1.0
CE2 A:TYR76 3.3 55.8 1.0
CZ A:TYR76 3.4 56.9 1.0
CB A:ILE180 3.5 41.5 1.0
CD2 A:TYR76 3.5 54.3 1.0
N1 B:UD5410 3.6 52.9 1.0
N3 B:UD5410 3.6 56.1 1.0
CE1 A:TYR76 3.7 55.4 1.0
N A:ILE180 3.7 45.2 1.0
CG A:TYR76 3.7 54.3 1.0
CD1 A:TYR76 3.8 56.8 1.0
O A:THR178 3.9 50.1 1.0
OH A:TYR76 4.0 58.9 1.0
C2 B:UD5410 4.1 54.9 1.0
CD1 A:LEU200 4.2 33.1 1.0
CA A:ILE180 4.2 42.5 1.0
CD2 A:LEU200 4.3 42.6 1.0
O A:HOH512 4.5 31.1 1.0
CD1 A:ILE180 4.5 45.5 1.0
CB A:TYR76 4.7 49.6 1.0
O A:HOH526 4.7 47.4 1.0
CG2 A:ILE180 4.7 39.7 1.0
CG A:LEU200 4.7 40.1 1.0
C A:TYR179 4.8 48.5 1.0
C1' B:UD5410 4.8 47.8 1.0
N A:ARG181 4.9 40.7 1.0
O4' B:UD5410 4.9 46.3 1.0
CA A:TYR179 4.9 49.3 1.0
C A:THR178 5.0 50.9 1.0

Reference:

C.Hoang, C.S.Hamilton, E.G.Mueller, A.R.Ferre-D'amare. Precursor Complex Structure of Pseudouridine Synthase Trub Suggests Coupling of Active Site Perturbations to An Rna-Sequestering Peripheral Protein Domain Protein Sci. V. 14 2201 2005.
ISSN: ISSN 0961-8368
PubMed: 15987897
DOI: 10.1110/PS.051493605
Page generated: Sun Dec 13 11:34:31 2020

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