Fluorine in PDB 2bcj: Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
Enzymatic activity of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
All present enzymatic activity of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits:
2.7.11.15;
Protein crystallography data
The structure of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits, PDB code: 2bcj
was solved by
J.J.G.Tesmer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.78 /
3.06
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.918,
129.954,
122.764,
90.00,
95.81,
90.00
|
R / Rfree (%)
|
24.3 /
29.2
|
Other elements in 2bcj:
The structure of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
(pdb code 2bcj). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits, PDB code: 2bcj:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 2bcj
Go back to
Fluorine Binding Sites List in 2bcj
Fluorine binding site 1 out
of 4 in the Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:F362
b:83.7
occ:1.00
|
F1
|
Q:ALF362
|
0.0
|
83.7
|
1.0
|
AL
|
Q:ALF362
|
1.8
|
81.7
|
1.0
|
F4
|
Q:ALF362
|
2.5
|
79.7
|
1.0
|
F3
|
Q:ALF362
|
2.5
|
83.0
|
1.0
|
O
|
Q:HOH363
|
2.6
|
68.2
|
1.0
|
O3B
|
Q:GDP360
|
2.8
|
76.2
|
1.0
|
N
|
Q:THR186
|
2.8
|
98.2
|
1.0
|
O
|
Q:HOH365
|
2.9
|
62.2
|
1.0
|
NH2
|
Q:ARG183
|
2.9
|
91.1
|
1.0
|
NH1
|
Q:ARG183
|
3.1
|
90.0
|
1.0
|
CA
|
Q:PRO185
|
3.2
|
97.2
|
1.0
|
MG
|
Q:MG361
|
3.4
|
87.7
|
1.0
|
CZ
|
Q:ARG183
|
3.4
|
91.3
|
1.0
|
C
|
Q:PRO185
|
3.4
|
97.5
|
1.0
|
F2
|
Q:ALF362
|
3.6
|
83.5
|
1.0
|
O
|
Q:THR186
|
3.6
|
100.0
|
1.0
|
CA
|
Q:THR186
|
3.8
|
98.9
|
1.0
|
CB
|
Q:PRO185
|
4.0
|
97.0
|
1.0
|
PB
|
Q:GDP360
|
4.1
|
73.0
|
1.0
|
CB
|
Q:THR186
|
4.1
|
98.6
|
1.0
|
C
|
Q:THR186
|
4.2
|
99.9
|
1.0
|
OG1
|
Q:THR186
|
4.3
|
97.1
|
1.0
|
NE2
|
Q:GLN209
|
4.3
|
99.2
|
1.0
|
N
|
Q:PRO185
|
4.3
|
96.8
|
1.0
|
O2B
|
Q:GDP360
|
4.4
|
77.9
|
1.0
|
O
|
Q:VAL184
|
4.4
|
97.1
|
1.0
|
OE1
|
Q:GLN209
|
4.4
|
97.8
|
1.0
|
O
|
Q:PRO185
|
4.5
|
97.4
|
1.0
|
O3A
|
Q:GDP360
|
4.6
|
74.4
|
1.0
|
NE
|
Q:ARG183
|
4.6
|
92.6
|
1.0
|
O
|
Q:HOH364
|
4.7
|
67.3
|
1.0
|
C
|
Q:VAL184
|
4.8
|
96.8
|
1.0
|
CD
|
Q:GLN209
|
4.8
|
99.7
|
1.0
|
N
|
Q:GLU49
|
4.8
|
91.2
|
1.0
|
CG
|
Q:PRO185
|
5.0
|
97.0
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 2bcj
Go back to
Fluorine Binding Sites List in 2bcj
Fluorine binding site 2 out
of 4 in the Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:F362
b:83.5
occ:1.00
|
F2
|
Q:ALF362
|
0.0
|
83.5
|
1.0
|
AL
|
Q:ALF362
|
1.8
|
81.7
|
1.0
|
O3B
|
Q:GDP360
|
2.3
|
76.2
|
1.0
|
NZ
|
Q:LYS52
|
2.4
|
88.6
|
1.0
|
F3
|
Q:ALF362
|
2.5
|
83.0
|
1.0
|
F4
|
Q:ALF362
|
2.6
|
79.7
|
1.0
|
N
|
Q:GLY208
|
2.9
|
0.8
|
1.0
|
O
|
Q:HOH363
|
3.0
|
68.2
|
1.0
|
CE
|
Q:LYS52
|
3.1
|
89.0
|
1.0
|
CA
|
Q:GLY208
|
3.3
|
0.8
|
1.0
|
CA
|
Q:GLY48
|
3.3
|
92.0
|
1.0
|
N
|
Q:GLU49
|
3.4
|
91.2
|
1.0
|
PB
|
Q:GDP360
|
3.4
|
73.0
|
1.0
|
O1B
|
Q:GDP360
|
3.5
|
73.7
|
1.0
|
F1
|
Q:ALF362
|
3.6
|
83.7
|
1.0
|
C
|
Q:GLY48
|
3.8
|
91.5
|
1.0
|
O
|
Q:THR47
|
3.9
|
92.5
|
1.0
|
C
|
Q:GLY207
|
3.9
|
0.1
|
1.0
|
N
|
Q:GLY48
|
4.1
|
92.2
|
1.0
|
O2B
|
Q:GDP360
|
4.1
|
77.9
|
1.0
|
MG
|
Q:MG361
|
4.2
|
87.7
|
1.0
|
OE1
|
Q:GLN209
|
4.2
|
97.8
|
1.0
|
CA
|
Q:GLY207
|
4.3
|
0.7
|
1.0
|
O
|
Q:VAL206
|
4.3
|
0.1
|
1.0
|
C
|
Q:THR47
|
4.3
|
92.6
|
1.0
|
O
|
Q:HOH364
|
4.3
|
67.3
|
1.0
|
C
|
Q:GLY208
|
4.4
|
0.5
|
1.0
|
NE2
|
Q:GLN209
|
4.4
|
99.2
|
1.0
|
CD
|
Q:LYS52
|
4.5
|
89.7
|
1.0
|
CA
|
Q:GLU49
|
4.5
|
91.1
|
1.0
|
O3A
|
Q:GDP360
|
4.7
|
74.4
|
1.0
|
O
|
Q:GLY46
|
4.7
|
93.9
|
1.0
|
CD
|
Q:GLN209
|
4.7
|
99.7
|
1.0
|
N
|
Q:GLN209
|
4.7
|
0.3
|
1.0
|
N
|
Q:SER50
|
4.8
|
90.6
|
1.0
|
O
|
Q:GLY207
|
4.9
|
0.0
|
1.0
|
O
|
Q:GLY48
|
4.9
|
91.5
|
1.0
|
CG
|
Q:LYS52
|
5.0
|
88.9
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 2bcj
Go back to
Fluorine Binding Sites List in 2bcj
Fluorine binding site 3 out
of 4 in the Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:F362
b:83.0
occ:1.00
|
F3
|
Q:ALF362
|
0.0
|
83.0
|
1.0
|
AL
|
Q:ALF362
|
1.8
|
81.7
|
1.0
|
MG
|
Q:MG361
|
2.0
|
87.7
|
1.0
|
O3B
|
Q:GDP360
|
2.3
|
76.2
|
1.0
|
O
|
Q:HOH364
|
2.5
|
67.3
|
1.0
|
F2
|
Q:ALF362
|
2.5
|
83.5
|
1.0
|
F1
|
Q:ALF362
|
2.5
|
83.7
|
1.0
|
O
|
Q:HOH363
|
2.9
|
68.2
|
1.0
|
O2B
|
Q:GDP360
|
3.1
|
77.9
|
1.0
|
O
|
Q:HOH365
|
3.2
|
62.2
|
1.0
|
PB
|
Q:GDP360
|
3.2
|
73.0
|
1.0
|
CB
|
Q:THR186
|
3.3
|
98.6
|
1.0
|
O
|
Q:VAL206
|
3.3
|
0.1
|
1.0
|
OG1
|
Q:THR186
|
3.5
|
97.1
|
1.0
|
F4
|
Q:ALF362
|
3.6
|
79.7
|
1.0
|
N
|
Q:THR186
|
3.8
|
98.2
|
1.0
|
CA
|
Q:GLY207
|
3.8
|
0.7
|
1.0
|
O
|
Q:THR186
|
3.9
|
100.0
|
1.0
|
CE
|
Q:LYS52
|
3.9
|
89.0
|
1.0
|
CA
|
Q:THR186
|
4.0
|
98.9
|
1.0
|
N
|
Q:GLY208
|
4.0
|
0.8
|
1.0
|
O1B
|
Q:GDP360
|
4.1
|
73.7
|
1.0
|
OG
|
Q:SER53
|
4.1
|
91.5
|
1.0
|
NZ
|
Q:LYS52
|
4.1
|
88.6
|
1.0
|
C
|
Q:VAL206
|
4.2
|
0.3
|
1.0
|
C
|
Q:THR186
|
4.3
|
99.9
|
1.0
|
C
|
Q:GLY207
|
4.4
|
0.1
|
1.0
|
N
|
Q:GLY207
|
4.4
|
0.9
|
1.0
|
CG2
|
Q:THR186
|
4.4
|
98.1
|
1.0
|
O3A
|
Q:GDP360
|
4.5
|
74.4
|
1.0
|
NH1
|
Q:ARG183
|
4.7
|
90.0
|
1.0
|
C
|
Q:PRO185
|
4.9
|
97.5
|
1.0
|
OD1
|
Q:ASP205
|
5.0
|
0.2
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 2bcj
Go back to
Fluorine Binding Sites List in 2bcj
Fluorine binding site 4 out
of 4 in the Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of G Protein-Coupled Receptor Kinase 2 in Complex with Galpha-Q and Gbetagamma Subunits within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:F362
b:79.7
occ:1.00
|
F4
|
Q:ALF362
|
0.0
|
79.7
|
1.0
|
AL
|
Q:ALF362
|
1.8
|
81.7
|
1.0
|
NE2
|
Q:GLN209
|
2.5
|
99.2
|
1.0
|
F1
|
Q:ALF362
|
2.5
|
83.7
|
1.0
|
F2
|
Q:ALF362
|
2.6
|
83.5
|
1.0
|
O
|
Q:HOH363
|
2.7
|
68.2
|
1.0
|
O3B
|
Q:GDP360
|
2.8
|
76.2
|
1.0
|
N
|
Q:GLU49
|
2.9
|
91.2
|
1.0
|
NH2
|
Q:ARG183
|
2.9
|
91.1
|
1.0
|
CD
|
Q:GLN209
|
3.3
|
99.7
|
1.0
|
CA
|
Q:GLY48
|
3.3
|
92.0
|
1.0
|
OE1
|
Q:GLN209
|
3.3
|
97.8
|
1.0
|
C
|
Q:GLY48
|
3.6
|
91.5
|
1.0
|
F3
|
Q:ALF362
|
3.6
|
83.0
|
1.0
|
CZ
|
Q:ARG183
|
3.8
|
91.3
|
1.0
|
NH1
|
Q:ARG183
|
3.8
|
90.0
|
1.0
|
CA
|
Q:GLU49
|
3.9
|
91.1
|
1.0
|
CG
|
Q:GLU49
|
3.9
|
91.2
|
1.0
|
PB
|
Q:GDP360
|
4.3
|
73.0
|
1.0
|
N
|
Q:GLY208
|
4.3
|
0.8
|
1.0
|
CB
|
Q:GLU49
|
4.5
|
91.0
|
1.0
|
N
|
Q:GLY48
|
4.6
|
92.2
|
1.0
|
CG
|
Q:GLN209
|
4.7
|
0.8
|
1.0
|
CA
|
Q:GLY208
|
4.7
|
0.8
|
1.0
|
O
|
Q:GLY48
|
4.8
|
91.5
|
1.0
|
O3A
|
Q:GDP360
|
4.8
|
74.4
|
1.0
|
NZ
|
Q:LYS52
|
4.8
|
88.6
|
1.0
|
O1B
|
Q:GDP360
|
4.9
|
73.7
|
1.0
|
N
|
Q:GLN209
|
4.9
|
0.3
|
1.0
|
O
|
Q:HOH365
|
4.9
|
62.2
|
1.0
|
|
Reference:
V.M.Tesmer,
T.Kawano,
A.Shankaranarayanan,
T.Kozasa,
J.J.G.Tesmer.
Snapshot of Activated G Proteins at the Membrane: the Gq-GRK2-G Complex Science V. 310 1686 2005.
ISSN: ISSN 0036-8075
PubMed: 16339447
DOI: 10.1126/SCIENCE.1118890
Page generated: Wed Jul 31 13:53:19 2024
|