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Fluorine in PDB 2f48: Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi

Enzymatic activity of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi

All present enzymatic activity of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi:
2.7.1.90;

Protein crystallography data

The structure of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi, PDB code: 2f48 was solved by M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.72 / 2.11
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.411, 100.979, 150.043, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 25.8

Other elements in 2f48:

The structure of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi also contains other interesting chemical elements:

Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi (pdb code 2f48). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi, PDB code: 2f48:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2f48

Go back to Fluorine Binding Sites List in 2f48
Fluorine binding site 1 out of 3 in the Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F861

b:52.7
occ:1.00
 F1 B:AF3861 0.0 52.7 1.0
AL B:AF3861 1.8 55.8 1.0
NZ B:LYS203 2.7 24.3 1.0
O B:HOH1084 2.9 43.6 1.0
N B:GLY175 2.9 30.5 1.0
F3 B:AF3861 3.1 50.9 1.0
F2 B:AF3861 3.1 53.5 1.0
O B:SER80 3.4 30.5 1.0
CE B:LYS203 3.5 25.9 1.0
CA B:GLY175 3.6 32.0 1.0
CA B:GLY81 3.7 27.6 1.0
C B:GLY174 3.9 30.3 1.0
CA B:GLY174 3.9 29.5 1.0
C B:SER80 4.0 29.8 1.0
N B:GLY81 4.2 28.9 1.0
OG B:SER80 4.4 34.1 1.0
OG B:SER178 4.5 35.5 1.0
C B:GLY81 4.6 26.8 1.0
CD B:LYS203 4.6 27.5 1.0
C B:GLY175 4.7 32.9 1.0
N B:GLY82 4.7 25.8 1.0
O B:LYS203 4.7 28.8 1.0
O B:GLY174 5.0 30.0 1.0

Fluorine binding site 2 out of 3 in 2f48

Go back to Fluorine Binding Sites List in 2f48
Fluorine binding site 2 out of 3 in the Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F861

b:53.5
occ:1.00
 F2 B:AF3861 0.0 53.5 1.0
AL B:AF3861 1.8 55.8 1.0
F3 B:AF3861 3.1 50.9 1.0
F1 B:AF3861 3.1 52.7 1.0
NH1 B:ARG146 3.2 61.0 1.0
CA B:GLY81 3.7 27.6 1.0
CB B:ARG146 4.0 55.1 1.0
O B:HOH1084 4.1 43.6 1.0
N B:GLY81 4.1 28.9 1.0
CZ B:ARG146 4.3 60.4 1.0
C B:SER80 4.6 29.8 1.0
OG B:SER80 4.7 34.1 1.0
O B:SER80 4.8 30.5 1.0
CD B:ARG146 4.8 56.5 1.0
CA B:ARG146 4.9 55.2 1.0
NE B:ARG146 5.0 59.2 1.0

Fluorine binding site 3 out of 3 in 2f48

Go back to Fluorine Binding Sites List in 2f48
Fluorine binding site 3 out of 3 in the Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F861

b:50.9
occ:1.00
 F3 B:AF3861 0.0 50.9 1.0
AL B:AF3861 1.8 55.8 1.0
N B:ASP177 3.1 34.6 1.0
F1 B:AF3861 3.1 52.7 1.0
F2 B:AF3861 3.1 53.5 1.0
C B:GLY175 3.3 32.9 1.0
CA B:GLY175 3.3 32.0 1.0
N B:ASP176 3.4 33.6 1.0
N B:GLY175 3.5 30.5 1.0
N B:SER178 3.5 34.5 1.0
CB B:ASP177 3.7 35.2 1.0
CA B:ASP177 3.7 34.9 1.0
O B:GLY175 3.8 32.6 1.0
O B:HOH927 3.9 38.9 1.0
C B:ASP176 4.0 34.3 1.0
C B:ASP177 4.1 34.6 1.0
OG B:SER178 4.1 35.5 1.0
CA B:ASP176 4.2 34.6 1.0
CG B:ASP177 4.3 38.5 1.0
OD2 B:ASP177 4.6 41.6 1.0
CB B:SER178 4.6 34.4 1.0
CA B:SER178 4.7 34.4 1.0
C B:GLY174 4.7 30.3 1.0
CB B:ASP176 4.9 35.0 1.0
O B:HOH1084 5.0 43.6 1.0

Reference:

M.Wang, V.Grum-Tokars. Crystal Structure of A Novel Fructose 1,6-Bisphosphate and ALF3 Containing Pyrophosphate-Dependent Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi To Be Published.
Page generated: Wed Jul 31 14:08:29 2024

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