Fluorine in PDB 2ftk: Berylloflouride SPO0F Complex with SPO0B
Protein crystallography data
The structure of Berylloflouride SPO0F Complex with SPO0B, PDB code: 2ftk
was solved by
K.I.Varughese,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.86 /
3.05
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.467,
118.331,
168.235,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
23.2 /
28.2
|
Other elements in 2ftk:
The structure of Berylloflouride SPO0F Complex with SPO0B also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Berylloflouride SPO0F Complex with SPO0B
(pdb code 2ftk). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Berylloflouride SPO0F Complex with SPO0B, PDB code: 2ftk:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 1 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F1254
b:60.0
occ:0.80
|
F1
|
E:BFD1254
|
0.0
|
60.0
|
0.8
|
|
BE
|
E:BFD1254
|
1.5
|
61.3
|
0.8
|
|
F3
|
E:BFD1254
|
2.4
|
62.6
|
0.8
|
|
F2
|
E:BFD1254
|
2.4
|
61.4
|
0.8
|
|
MG
|
E:MG2001
|
2.4
|
37.2
|
1.0
|
|
OD2
|
E:BFD1254
|
2.5
|
62.7
|
1.0
|
|
OD1
|
E:BFD1254
|
2.6
|
62.1
|
1.0
|
|
O
|
E:LYS1256
|
2.8
|
70.6
|
1.0
|
|
CG
|
E:BFD1254
|
2.8
|
62.6
|
1.0
|
|
CB
|
E:LYS1256
|
2.9
|
74.2
|
1.0
|
|
N
|
E:LYS1256
|
3.1
|
70.4
|
1.0
|
|
NE2
|
A:HIS30
|
3.2
|
47.7
|
1.0
|
|
CA
|
E:LYS1256
|
3.2
|
71.7
|
1.0
|
|
C
|
E:LYS1256
|
3.3
|
71.2
|
1.0
|
|
CE1
|
A:HIS30
|
3.7
|
47.8
|
1.0
|
|
CG
|
E:LYS1256
|
4.0
|
77.8
|
1.0
|
|
OD1
|
E:ASP1211
|
4.2
|
62.6
|
1.0
|
|
NZ
|
E:LYS1304
|
4.2
|
49.3
|
1.0
|
|
C
|
E:MET1255
|
4.3
|
69.0
|
1.0
|
|
N
|
E:MET1255
|
4.3
|
67.7
|
1.0
|
|
CB
|
E:BFD1254
|
4.3
|
63.4
|
1.0
|
|
CD2
|
A:HIS30
|
4.4
|
45.5
|
1.0
|
|
N
|
E:ILE1257
|
4.6
|
71.4
|
1.0
|
|
ND2
|
A:ASN34
|
4.7
|
45.4
|
1.0
|
|
OG1
|
E:THR1282
|
4.7
|
62.8
|
1.0
|
|
OD1
|
A:ASN34
|
4.8
|
47.4
|
1.0
|
|
CA
|
E:MET1255
|
4.8
|
68.9
|
1.0
|
|
C
|
E:BFD1254
|
4.8
|
66.9
|
1.0
|
|
OD1
|
E:ASP1210
|
5.0
|
55.8
|
1.0
|
|
ND1
|
A:HIS30
|
5.0
|
46.5
|
1.0
|
|
CA
|
E:BFD1254
|
5.0
|
64.9
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 2 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F1254
b:61.4
occ:0.80
|
F2
|
E:BFD1254
|
0.0
|
61.4
|
0.8
|
|
BE
|
E:BFD1254
|
1.5
|
61.3
|
0.8
|
|
F1
|
E:BFD1254
|
2.4
|
60.0
|
0.8
|
|
F3
|
E:BFD1254
|
2.4
|
62.6
|
0.8
|
|
OD1
|
E:BFD1254
|
2.5
|
62.1
|
1.0
|
|
NZ
|
E:LYS1304
|
2.9
|
49.3
|
1.0
|
|
CE1
|
A:HIS30
|
3.1
|
47.8
|
1.0
|
|
CE
|
E:LYS1304
|
3.3
|
51.0
|
1.0
|
|
NE2
|
A:HIS30
|
3.3
|
47.7
|
1.0
|
|
OD1
|
A:ASN34
|
3.5
|
47.4
|
1.0
|
|
CD
|
E:LYS1304
|
3.5
|
53.1
|
1.0
|
|
CA
|
E:THR1282
|
3.5
|
63.2
|
1.0
|
|
CG
|
E:BFD1254
|
3.6
|
62.6
|
1.0
|
|
OG1
|
E:THR1282
|
3.8
|
62.8
|
1.0
|
|
N
|
E:ALA1283
|
3.8
|
66.4
|
1.0
|
|
ND2
|
A:ASN34
|
4.0
|
45.4
|
1.0
|
|
C
|
E:THR1282
|
4.0
|
64.3
|
1.0
|
|
MG
|
E:MG2001
|
4.0
|
37.2
|
1.0
|
|
OD2
|
E:BFD1254
|
4.1
|
62.7
|
1.0
|
|
CB
|
E:THR1282
|
4.1
|
62.5
|
1.0
|
|
CG
|
A:ASN34
|
4.1
|
45.3
|
1.0
|
|
ND1
|
A:HIS30
|
4.3
|
46.5
|
1.0
|
|
O
|
E:MET1281
|
4.3
|
63.0
|
1.0
|
|
N
|
E:THR1282
|
4.5
|
63.2
|
1.0
|
|
CG
|
E:LYS1304
|
4.6
|
56.0
|
1.0
|
|
CD2
|
A:HIS30
|
4.6
|
45.5
|
1.0
|
|
CB
|
E:LYS1256
|
4.8
|
74.2
|
1.0
|
|
N
|
E:LYS1256
|
4.8
|
70.4
|
1.0
|
|
C
|
E:MET1281
|
4.8
|
62.8
|
1.0
|
|
CB
|
E:ALA1283
|
4.8
|
67.5
|
1.0
|
|
CA
|
E:ALA1283
|
4.9
|
68.7
|
1.0
|
|
CB
|
E:BFD1254
|
4.9
|
63.4
|
1.0
|
|
N
|
E:MET1255
|
5.0
|
67.7
|
1.0
|
|
O
|
E:THR1282
|
5.0
|
63.9
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 3 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F1254
b:62.6
occ:0.80
|
F3
|
E:BFD1254
|
0.0
|
62.6
|
0.8
|
|
BE
|
E:BFD1254
|
1.5
|
61.3
|
0.8
|
|
F1
|
E:BFD1254
|
2.4
|
60.0
|
0.8
|
|
F2
|
E:BFD1254
|
2.4
|
61.4
|
0.8
|
|
OD1
|
E:BFD1254
|
2.5
|
62.1
|
1.0
|
|
OG1
|
E:THR1282
|
2.8
|
62.8
|
1.0
|
|
N
|
E:LYS1256
|
2.8
|
70.4
|
1.0
|
|
N
|
E:MET1255
|
2.9
|
67.7
|
1.0
|
|
CB
|
E:THR1282
|
3.1
|
62.5
|
1.0
|
|
CG
|
E:BFD1254
|
3.2
|
62.6
|
1.0
|
|
CA
|
E:THR1282
|
3.4
|
63.2
|
1.0
|
|
CA
|
E:MET1255
|
3.4
|
68.9
|
1.0
|
|
CB
|
E:MET1255
|
3.5
|
70.4
|
1.0
|
|
O
|
E:MET1281
|
3.5
|
63.0
|
1.0
|
|
C
|
E:MET1255
|
3.6
|
69.0
|
1.0
|
|
OD2
|
E:BFD1254
|
3.6
|
62.7
|
1.0
|
|
CB
|
E:LYS1256
|
3.8
|
74.2
|
1.0
|
|
CA
|
E:LYS1256
|
3.8
|
71.7
|
1.0
|
|
C
|
E:BFD1254
|
3.9
|
66.9
|
1.0
|
|
CE1
|
A:HIS30
|
4.0
|
47.8
|
1.0
|
|
CG
|
E:LYS1256
|
4.1
|
77.8
|
1.0
|
|
CA
|
E:BFD1254
|
4.2
|
64.9
|
1.0
|
|
NE2
|
A:HIS30
|
4.3
|
47.7
|
1.0
|
|
CG
|
E:MET1255
|
4.3
|
74.0
|
1.0
|
|
CB
|
E:BFD1254
|
4.3
|
63.4
|
1.0
|
|
C
|
E:MET1281
|
4.3
|
62.8
|
1.0
|
|
N
|
E:THR1282
|
4.3
|
63.2
|
1.0
|
|
N
|
E:ALA1283
|
4.4
|
66.4
|
1.0
|
|
C
|
E:THR1282
|
4.4
|
64.3
|
1.0
|
|
CG2
|
E:THR1282
|
4.5
|
62.3
|
1.0
|
|
O
|
E:LYS1256
|
4.6
|
70.6
|
1.0
|
|
C
|
E:LYS1256
|
4.6
|
71.2
|
1.0
|
|
MG
|
E:MG2001
|
4.7
|
37.2
|
1.0
|
|
NZ
|
E:LYS1304
|
4.7
|
49.3
|
1.0
|
|
O
|
E:MET1255
|
4.8
|
68.8
|
1.0
|
|
O
|
E:BFD1254
|
4.9
|
68.0
|
1.0
|
|
CE
|
E:LYS1304
|
5.0
|
51.0
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 4 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F1054
b:42.8
occ:0.80
|
F1
|
F:BFD1054
|
0.0
|
42.8
|
0.8
|
|
BE
|
F:BFD1054
|
1.5
|
42.2
|
0.8
|
|
MG
|
F:MG2002
|
2.4
|
37.2
|
1.0
|
|
F2
|
F:BFD1054
|
2.4
|
42.6
|
0.8
|
|
F3
|
F:BFD1054
|
2.4
|
41.0
|
0.8
|
|
OD1
|
F:BFD1054
|
2.6
|
43.4
|
1.0
|
|
OD2
|
F:BFD1054
|
2.6
|
40.5
|
1.0
|
|
O
|
F:LYS1056
|
2.7
|
46.5
|
1.0
|
|
CB
|
F:LYS1056
|
2.8
|
47.2
|
1.0
|
|
CG
|
F:BFD1054
|
2.9
|
41.7
|
1.0
|
|
N
|
F:LYS1056
|
3.1
|
45.7
|
1.0
|
|
CE1
|
B:HIS230
|
3.1
|
44.0
|
1.0
|
|
CA
|
F:LYS1056
|
3.2
|
46.7
|
1.0
|
|
C
|
F:LYS1056
|
3.3
|
47.1
|
1.0
|
|
NE2
|
B:HIS230
|
3.4
|
44.5
|
1.0
|
|
CG
|
F:LYS1056
|
3.9
|
49.6
|
1.0
|
|
OD1
|
F:ASP1011
|
4.1
|
54.6
|
1.0
|
|
N
|
F:MET1055
|
4.3
|
39.3
|
1.0
|
|
C
|
F:MET1055
|
4.4
|
43.6
|
1.0
|
|
CB
|
F:BFD1054
|
4.4
|
40.4
|
1.0
|
|
ND1
|
B:HIS230
|
4.4
|
44.6
|
1.0
|
|
NZ
|
F:LYS1104
|
4.4
|
37.7
|
1.0
|
|
OD1
|
B:ASN234
|
4.4
|
43.3
|
1.0
|
|
N
|
F:ILE1057
|
4.6
|
48.8
|
1.0
|
|
CD2
|
B:HIS230
|
4.7
|
44.2
|
1.0
|
|
OG1
|
F:THR1082
|
4.8
|
38.2
|
1.0
|
|
CA
|
F:MET1055
|
4.9
|
41.6
|
1.0
|
|
ND2
|
B:ASN234
|
4.9
|
46.6
|
1.0
|
|
OD1
|
F:ASP1010
|
4.9
|
51.1
|
1.0
|
|
C
|
F:BFD1054
|
4.9
|
39.6
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 5 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F1054
b:42.6
occ:0.80
|
F2
|
F:BFD1054
|
0.0
|
42.6
|
0.8
|
|
BE
|
F:BFD1054
|
1.5
|
42.2
|
0.8
|
|
F1
|
F:BFD1054
|
2.4
|
42.8
|
0.8
|
|
F3
|
F:BFD1054
|
2.4
|
41.0
|
0.8
|
|
OD1
|
F:BFD1054
|
2.6
|
43.4
|
1.0
|
|
NE2
|
B:HIS230
|
3.0
|
44.5
|
1.0
|
|
CE1
|
B:HIS230
|
3.1
|
44.0
|
1.0
|
|
NZ
|
F:LYS1104
|
3.2
|
37.7
|
1.0
|
|
OD1
|
B:ASN234
|
3.5
|
43.3
|
1.0
|
|
CD
|
F:LYS1104
|
3.5
|
39.1
|
1.0
|
|
CE
|
F:LYS1104
|
3.5
|
37.5
|
1.0
|
|
CA
|
F:THR1082
|
3.6
|
35.5
|
1.0
|
|
CG
|
F:BFD1054
|
3.7
|
41.7
|
1.0
|
|
ND2
|
B:ASN234
|
3.8
|
46.6
|
1.0
|
|
N
|
F:ALA1083
|
3.8
|
36.6
|
1.0
|
|
OG1
|
F:THR1082
|
3.9
|
38.2
|
1.0
|
|
MG
|
F:MG2002
|
3.9
|
37.2
|
1.0
|
|
C
|
F:THR1082
|
4.0
|
35.8
|
1.0
|
|
CG
|
B:ASN234
|
4.0
|
43.0
|
1.0
|
|
OD2
|
F:BFD1054
|
4.1
|
40.5
|
1.0
|
|
CB
|
F:THR1082
|
4.2
|
35.1
|
1.0
|
|
CD2
|
B:HIS230
|
4.3
|
44.2
|
1.0
|
|
ND1
|
B:HIS230
|
4.3
|
44.6
|
1.0
|
|
O
|
F:MET1081
|
4.4
|
36.2
|
1.0
|
|
CG
|
F:LYS1104
|
4.5
|
39.9
|
1.0
|
|
N
|
F:THR1082
|
4.6
|
36.0
|
1.0
|
|
CB
|
F:LYS1056
|
4.8
|
47.2
|
1.0
|
|
N
|
F:LYS1056
|
4.8
|
45.7
|
1.0
|
|
C
|
F:MET1081
|
4.9
|
36.2
|
1.0
|
|
CB
|
F:ALA1083
|
4.9
|
38.3
|
1.0
|
|
CA
|
F:ALA1083
|
4.9
|
37.6
|
1.0
|
|
CG
|
B:HIS230
|
4.9
|
42.8
|
1.0
|
|
N
|
F:MET1055
|
4.9
|
39.3
|
1.0
|
|
O
|
F:THR1082
|
4.9
|
37.6
|
1.0
|
|
CB
|
F:BFD1054
|
5.0
|
40.4
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 6 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F1054
b:41.0
occ:0.80
|
F3
|
F:BFD1054
|
0.0
|
41.0
|
0.8
|
|
BE
|
F:BFD1054
|
1.5
|
42.2
|
0.8
|
|
F2
|
F:BFD1054
|
2.4
|
42.6
|
0.8
|
|
F1
|
F:BFD1054
|
2.4
|
42.8
|
0.8
|
|
OD1
|
F:BFD1054
|
2.5
|
43.4
|
1.0
|
|
OG1
|
F:THR1082
|
2.8
|
38.2
|
1.0
|
|
N
|
F:MET1055
|
2.8
|
39.3
|
1.0
|
|
N
|
F:LYS1056
|
2.9
|
45.7
|
1.0
|
|
CB
|
F:THR1082
|
3.2
|
35.1
|
1.0
|
|
CG
|
F:BFD1054
|
3.3
|
41.7
|
1.0
|
|
CA
|
F:THR1082
|
3.4
|
35.5
|
1.0
|
|
CA
|
F:MET1055
|
3.4
|
41.6
|
1.0
|
|
O
|
F:MET1081
|
3.5
|
36.2
|
1.0
|
|
CB
|
F:MET1055
|
3.5
|
40.8
|
1.0
|
|
C
|
F:MET1055
|
3.6
|
43.6
|
1.0
|
|
NE2
|
B:HIS230
|
3.7
|
44.5
|
1.0
|
|
OD2
|
F:BFD1054
|
3.8
|
40.5
|
1.0
|
|
CB
|
F:LYS1056
|
3.8
|
47.2
|
1.0
|
|
C
|
F:BFD1054
|
3.8
|
39.6
|
1.0
|
|
CA
|
F:LYS1056
|
3.8
|
46.7
|
1.0
|
|
CG
|
F:LYS1056
|
4.1
|
49.6
|
1.0
|
|
CA
|
F:BFD1054
|
4.1
|
39.1
|
1.0
|
|
CE1
|
B:HIS230
|
4.3
|
44.0
|
1.0
|
|
CB
|
F:BFD1054
|
4.3
|
40.4
|
1.0
|
|
C
|
F:MET1081
|
4.3
|
36.2
|
1.0
|
|
CG
|
F:MET1055
|
4.3
|
42.0
|
1.0
|
|
N
|
F:THR1082
|
4.3
|
36.0
|
1.0
|
|
N
|
F:ALA1083
|
4.4
|
36.6
|
1.0
|
|
C
|
F:THR1082
|
4.4
|
35.8
|
1.0
|
|
O
|
F:LYS1056
|
4.5
|
46.5
|
1.0
|
|
C
|
F:LYS1056
|
4.6
|
47.1
|
1.0
|
|
MG
|
F:MG2002
|
4.6
|
37.2
|
1.0
|
|
CG2
|
F:THR1082
|
4.7
|
33.6
|
1.0
|
|
O
|
F:MET1055
|
4.8
|
44.6
|
1.0
|
|
NZ
|
F:LYS1104
|
4.9
|
37.7
|
1.0
|
|
CD2
|
B:HIS230
|
4.9
|
44.2
|
1.0
|
|
O
|
F:BFD1054
|
4.9
|
41.0
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 7 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F1654
b:86.2
occ:0.50
|
F1
|
G:BFD1654
|
0.0
|
86.2
|
0.5
|
|
BE
|
G:BFD1654
|
1.5
|
87.5
|
0.5
|
|
F2
|
G:BFD1654
|
2.4
|
87.4
|
0.5
|
|
F3
|
G:BFD1654
|
2.4
|
86.8
|
0.5
|
|
OD1
|
G:BFD1654
|
2.6
|
88.0
|
1.0
|
|
MG
|
G:MG2004
|
2.7
|
37.2
|
1.0
|
|
OD2
|
G:BFD1654
|
3.0
|
88.1
|
1.0
|
|
CG
|
G:BFD1654
|
3.2
|
88.2
|
1.0
|
|
O
|
G:LYS1656
|
3.3
|
98.7
|
0.9
|
|
CB
|
G:LYS1656
|
3.4
|
97.6
|
0.9
|
|
NE2
|
C:HIS430
|
3.5
|
78.7
|
1.0
|
|
CE1
|
C:HIS430
|
3.5
|
79.3
|
1.0
|
|
CE
|
G:LYS1656
|
3.7
|
98.1
|
0.9
|
|
N
|
G:LYS1656
|
3.9
|
96.3
|
0.9
|
|
CA
|
G:LYS1656
|
4.0
|
97.6
|
0.9
|
|
C
|
G:LYS1656
|
4.0
|
98.8
|
0.9
|
|
ND2
|
C:ASN434
|
4.3
|
72.6
|
1.0
|
|
CD
|
G:LYS1656
|
4.3
|
98.2
|
0.9
|
|
NZ
|
G:LYS1704
|
4.4
|
92.2
|
0.9
|
|
CG
|
G:LYS1656
|
4.4
|
98.0
|
0.9
|
|
OE1
|
G:GLN1612
|
4.4
|
86.0
|
0.9
|
|
NZ
|
G:LYS1656
|
4.4
|
96.8
|
0.9
|
|
OG1
|
G:THR1682
|
4.7
|
0.3
|
0.9
|
|
CB
|
G:BFD1654
|
4.7
|
88.2
|
1.0
|
|
N
|
G:MET1655
|
4.7
|
90.9
|
0.9
|
|
OD1
|
G:ASP1611
|
4.8
|
90.2
|
0.9
|
|
CD2
|
C:HIS430
|
4.8
|
77.8
|
1.0
|
|
OD1
|
C:ASN434
|
4.8
|
73.5
|
1.0
|
|
CD
|
G:LYS1704
|
4.9
|
92.2
|
0.9
|
|
ND1
|
C:HIS430
|
4.9
|
79.1
|
1.0
|
|
OD1
|
G:ASP1610
|
5.0
|
86.1
|
0.9
|
|
OD2
|
G:ASP1611
|
5.0
|
88.4
|
0.9
|
|
CE
|
G:LYS1704
|
5.0
|
91.5
|
0.9
|
|
Fluorine binding site 8 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 8 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F1654
b:87.4
occ:0.50
|
F2
|
G:BFD1654
|
0.0
|
87.4
|
0.5
|
|
BE
|
G:BFD1654
|
1.5
|
87.5
|
0.5
|
|
F1
|
G:BFD1654
|
2.4
|
86.2
|
0.5
|
|
F3
|
G:BFD1654
|
2.4
|
86.8
|
0.5
|
|
OD1
|
G:BFD1654
|
2.5
|
88.0
|
1.0
|
|
CA
|
G:THR1682
|
3.1
|
0.5
|
0.9
|
|
CD
|
G:LYS1704
|
3.3
|
92.2
|
0.9
|
|
CE
|
G:LYS1704
|
3.3
|
91.5
|
0.9
|
|
NZ
|
G:LYS1704
|
3.3
|
92.2
|
0.9
|
|
O
|
G:MET1681
|
3.3
|
99.7
|
0.9
|
|
OG1
|
G:THR1682
|
3.4
|
0.3
|
0.9
|
|
N
|
G:THR1682
|
3.6
|
0.1
|
0.9
|
|
CG
|
G:BFD1654
|
3.7
|
88.2
|
1.0
|
|
C
|
G:MET1681
|
3.7
|
99.5
|
0.9
|
|
CB
|
G:THR1682
|
3.8
|
0.7
|
0.9
|
|
CG
|
G:LYS1704
|
3.9
|
93.4
|
0.9
|
|
CE
|
G:LYS1656
|
3.9
|
98.1
|
0.9
|
|
C
|
G:THR1682
|
4.0
|
0.6
|
0.9
|
|
N
|
G:ALA1683
|
4.1
|
0.7
|
0.9
|
|
NZ
|
G:LYS1656
|
4.2
|
96.8
|
0.9
|
|
CE1
|
C:HIS430
|
4.2
|
79.3
|
1.0
|
|
OD2
|
G:BFD1654
|
4.2
|
88.1
|
1.0
|
|
MG
|
G:MG2004
|
4.3
|
37.2
|
1.0
|
|
CG2
|
G:THR1682
|
4.6
|
0.6
|
0.9
|
|
OD1
|
G:ASP1610
|
4.7
|
86.1
|
0.9
|
|
N
|
G:MET1655
|
4.7
|
90.9
|
0.9
|
|
OD1
|
C:ASN434
|
4.8
|
73.5
|
1.0
|
|
CB
|
G:MET1681
|
4.8
|
98.3
|
0.9
|
|
CB
|
G:BFD1654
|
4.8
|
88.2
|
1.0
|
|
NE2
|
C:HIS430
|
4.8
|
78.7
|
1.0
|
|
CA
|
G:MET1681
|
4.9
|
98.6
|
0.9
|
|
CA
|
G:BFD1654
|
4.9
|
87.7
|
1.0
|
|
ND2
|
C:ASN434
|
5.0
|
72.6
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 9 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F1654
b:86.8
occ:0.50
|
F3
|
G:BFD1654
|
0.0
|
86.8
|
0.5
|
|
BE
|
G:BFD1654
|
1.5
|
87.5
|
0.5
|
|
F2
|
G:BFD1654
|
2.4
|
87.4
|
0.5
|
|
F1
|
G:BFD1654
|
2.4
|
86.2
|
0.5
|
|
OD1
|
G:BFD1654
|
2.6
|
88.0
|
1.0
|
|
OG1
|
G:THR1682
|
2.6
|
0.3
|
0.9
|
|
N
|
G:LYS1656
|
2.7
|
96.3
|
0.9
|
|
N
|
G:MET1655
|
2.7
|
90.9
|
0.9
|
|
CG
|
G:BFD1654
|
2.9
|
88.2
|
1.0
|
|
OD2
|
G:BFD1654
|
2.9
|
88.1
|
1.0
|
|
O
|
G:MET1681
|
3.2
|
99.7
|
0.9
|
|
CE
|
G:LYS1656
|
3.2
|
98.1
|
0.9
|
|
CA
|
G:MET1655
|
3.4
|
93.5
|
0.9
|
|
CB
|
G:MET1655
|
3.5
|
94.5
|
0.9
|
|
C
|
G:MET1655
|
3.5
|
95.0
|
0.9
|
|
CB
|
G:LYS1656
|
3.5
|
97.6
|
0.9
|
|
CA
|
G:LYS1656
|
3.6
|
97.6
|
0.9
|
|
C
|
G:BFD1654
|
3.8
|
88.4
|
1.0
|
|
CB
|
G:THR1682
|
3.8
|
0.7
|
0.9
|
|
CB
|
G:BFD1654
|
4.0
|
88.2
|
1.0
|
|
CA
|
G:THR1682
|
4.0
|
0.5
|
0.9
|
|
CG
|
G:LYS1656
|
4.0
|
98.0
|
0.9
|
|
CA
|
G:BFD1654
|
4.0
|
87.7
|
1.0
|
|
C
|
G:MET1681
|
4.2
|
99.5
|
0.9
|
|
O
|
G:LYS1656
|
4.2
|
98.7
|
0.9
|
|
CD
|
G:LYS1656
|
4.2
|
98.2
|
0.9
|
|
NZ
|
G:LYS1656
|
4.2
|
96.8
|
0.9
|
|
C
|
G:LYS1656
|
4.3
|
98.8
|
0.9
|
|
MG
|
G:MG2004
|
4.4
|
37.2
|
1.0
|
|
CG
|
G:MET1655
|
4.4
|
95.9
|
0.9
|
|
CG2
|
G:THR1682
|
4.5
|
0.6
|
0.9
|
|
N
|
G:THR1682
|
4.5
|
0.1
|
0.9
|
|
O
|
G:MET1655
|
4.7
|
95.6
|
0.9
|
|
O
|
G:BFD1654
|
4.9
|
87.7
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 2ftk
Go back to
Fluorine Binding Sites List in 2ftk
Fluorine binding site 10 out
of 12 in the Berylloflouride SPO0F Complex with SPO0B
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Berylloflouride SPO0F Complex with SPO0B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:F1454
b:67.9
occ:0.50
|
F1
|
H:BFD1454
|
0.0
|
67.9
|
0.5
|
|
BE
|
H:BFD1454
|
1.5
|
68.0
|
0.5
|
|
F2
|
H:BFD1454
|
2.4
|
66.6
|
0.5
|
|
F3
|
H:BFD1454
|
2.4
|
67.5
|
0.5
|
|
MG
|
H:MG2003
|
2.4
|
37.2
|
1.0
|
|
OD1
|
H:BFD1454
|
2.6
|
69.6
|
1.0
|
|
OD2
|
H:BFD1454
|
2.6
|
68.2
|
1.0
|
|
O
|
H:LYS1456
|
2.8
|
84.0
|
1.0
|
|
CB
|
H:LYS1456
|
2.9
|
84.6
|
1.0
|
|
CG
|
H:BFD1454
|
2.9
|
69.2
|
1.0
|
|
CE1
|
D:HIS630
|
3.1
|
76.4
|
1.0
|
|
N
|
H:LYS1456
|
3.1
|
81.1
|
1.0
|
|
CA
|
H:LYS1456
|
3.2
|
83.4
|
1.0
|
|
NE2
|
D:HIS630
|
3.2
|
77.9
|
1.0
|
|
C
|
H:LYS1456
|
3.4
|
84.3
|
1.0
|
|
CG
|
H:LYS1456
|
4.0
|
88.0
|
1.0
|
|
NZ
|
H:LYS1504
|
4.2
|
81.2
|
1.0
|
|
OD1
|
H:ASP1411
|
4.2
|
69.8
|
1.0
|
|
ND1
|
D:HIS630
|
4.3
|
75.1
|
1.0
|
|
N
|
H:MET1455
|
4.3
|
74.2
|
1.0
|
|
C
|
H:MET1455
|
4.4
|
79.0
|
1.0
|
|
CB
|
H:BFD1454
|
4.4
|
69.4
|
1.0
|
|
CD2
|
D:HIS630
|
4.6
|
76.1
|
1.0
|
|
N
|
H:ILE1457
|
4.6
|
85.6
|
1.0
|
|
OG1
|
H:THR1482
|
4.6
|
78.9
|
1.0
|
|
ND2
|
D:ASN634
|
4.7
|
60.6
|
1.0
|
|
OD1
|
D:ASN634
|
4.8
|
59.6
|
1.0
|
|
CA
|
H:MET1455
|
4.9
|
77.2
|
1.0
|
|
OD1
|
H:ASP1410
|
4.9
|
68.2
|
1.0
|
|
C
|
H:BFD1454
|
4.9
|
72.0
|
1.0
|
|
Reference:
K.I.Varughese,
I.Tsigelny,
H.Zhao.
The Crystal Structure of Beryllofluoride SPO0F in Complex with the Phosphotransferase SPO0B Represents A Phosphotransfer Pretransition State. J.Bacteriol. V. 188 4970 2006.
ISSN: ISSN 0021-9193
PubMed: 16788205
DOI: 10.1128/JB.00160-06
Page generated: Wed Jul 31 14:23:43 2024
|
