Atomistry » Fluorine » PDB 2fq9-2gtm » 2fzd
Atomistry »
  Fluorine »
    PDB 2fq9-2gtm »
      2fzd »

Fluorine in PDB 2fzd: Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution.

Enzymatic activity of Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution.

All present enzymatic activity of Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution.:
1.1.1.21;

Protein crystallography data

The structure of Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution., PDB code: 2fzd was solved by H.Steuber, M.Zentgraf, C.Gerlach, C.A.Sotriffer, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.08
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.450, 66.679, 46.060, 90.00, 92.45, 90.00
R / Rfree (%) 11 / 13.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution. (pdb code 2fzd). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution., PDB code: 2fzd:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2fzd

Go back to Fluorine Binding Sites List in 2fzd
Fluorine binding site 1 out of 3 in the Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F317

b:15.9
occ:1.00
F1 A:TOL317 0.0 15.9 1.0
C1 A:TOL317 1.3 9.1 1.0
F2 A:TOL317 2.1 16.7 1.0
F3 A:TOL317 2.1 17.4 1.0
C2 A:TOL317 2.3 7.6 1.0
C12 A:TOL317 2.9 7.6 1.0
C11 A:TOL317 2.9 9.2 1.0
OG A:SER302 2.9 34.3 1.0
O A:HOH635 3.0 31.4 1.0
C3 A:TOL317 3.4 7.2 1.0
O A:HOH657 3.6 33.8 1.0
O A:HOH618 3.7 33.7 1.0
CB A:LEU300 3.7 17.0 1.0
O1 A:TOL317 3.7 8.4 1.0
CD2 A:LEU300 4.0 25.5 1.0
CG A:LEU300 4.2 19.0 1.0
C10 A:TOL317 4.2 9.1 1.0
CB A:SER302 4.2 41.0 1.0
C7 A:TOL317 4.2 6.4 1.0
CD1 A:LEU300 4.3 22.2 1.0
CA A:LEU300 4.3 16.7 1.0
O A:HOH487 4.4 15.5 1.0
O A:HOH592 4.4 23.5 1.0
CB A:CYS303 4.6 23.5 1.0
C5 A:TOL317 4.6 6.6 1.0
O A:LEU300 4.7 23.8 1.0
N A:CYS303 4.7 26.3 1.0
C A:LEU300 4.7 20.8 1.0
C A:SER302 4.9 31.5 1.0
C6 A:TOL317 4.9 6.0 1.0
CA A:SER302 4.9 36.7 1.0
N A:SER302 4.9 31.9 1.0

Fluorine binding site 2 out of 3 in 2fzd

Go back to Fluorine Binding Sites List in 2fzd
Fluorine binding site 2 out of 3 in the Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F317

b:16.7
occ:1.00
F2 A:TOL317 0.0 16.7 1.0
C1 A:TOL317 1.3 9.1 1.0
F3 A:TOL317 2.1 17.4 1.0
F1 A:TOL317 2.1 15.9 1.0
C2 A:TOL317 2.3 7.6 1.0
O1 A:TOL317 2.4 8.4 1.0
C3 A:TOL317 2.8 7.2 1.0
CB A:CYS303 3.6 23.5 1.0
CG1 A:VAL130 3.6 20.4 1.0
OG A:SER302 3.6 34.3 1.0
C12 A:TOL317 3.6 7.6 1.0
C4 A:TOL317 3.7 10.3 1.0
CZ A:PHE115 3.8 9.5 1.0
SG A:CYS303 3.9 26.1 1.0
C5 A:TOL317 4.2 6.6 1.0
C11 A:TOL317 4.2 9.2 1.0
CE2 A:PHE115 4.4 8.7 1.0
CA A:CYS303 4.4 23.0 1.0
N A:CYS303 4.5 26.3 1.0
O A:HOH618 4.5 33.7 1.0
CB A:LEU300 4.6 17.0 1.0
CE1 A:PHE115 4.7 10.0 1.0
C7 A:TOL317 4.8 6.4 1.0
C A:SER302 4.8 31.5 1.0
O A:HOH635 4.8 31.4 1.0
CD1 A:LEU300 4.9 22.2 1.0
CB A:VAL130 4.9 16.5 1.0
C6 A:TOL317 4.9 6.0 1.0

Fluorine binding site 3 out of 3 in 2fzd

Go back to Fluorine Binding Sites List in 2fzd
Fluorine binding site 3 out of 3 in the Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human Aldose Reductase Complexed with Tolrestat at 1.08 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F317

b:17.4
occ:1.00
F3 A:TOL317 0.0 17.4 1.0
C1 A:TOL317 1.3 9.1 1.0
F2 A:TOL317 2.1 16.7 1.0
F1 A:TOL317 2.1 15.9 1.0
C2 A:TOL317 2.4 7.6 1.0
C12 A:TOL317 2.9 7.6 1.0
C11 A:TOL317 2.9 9.2 1.0
O A:HOH487 3.2 15.5 1.0
O A:HOH618 3.2 33.7 1.0
CD1 A:PHE122 3.4 9.4 1.0
C3 A:TOL317 3.5 7.2 1.0
OG A:SER302 3.7 34.3 1.0
O1 A:TOL317 3.8 8.4 1.0
CE1 A:PHE122 4.0 9.3 1.0
C10 A:TOL317 4.2 9.1 1.0
C7 A:TOL317 4.2 6.4 1.0
CG1 A:VAL130 4.3 20.4 1.0
CG A:PHE122 4.4 7.2 1.0
O A:HOH592 4.6 23.5 1.0
C5 A:TOL317 4.6 6.6 1.0
CB A:PHE122 4.6 8.9 1.0
CE2 A:PHE115 4.7 8.7 1.0
CZ A:PHE115 4.7 9.5 1.0
O A:HOH635 4.8 31.4 1.0
O A:HOH657 4.9 33.8 1.0
C6 A:TOL317 4.9 6.0 1.0

Reference:

H.Steuber, M.Zentgraf, C.Gerlach, C.A.Sotriffer, A.Heine, G.Klebe. Expect the Unexpected or Caveat For Drug Designers: Multiple Structure Determinations Using Aldose Reductase Crystals Treated Under Varying Soaking and Co-Crystallisation Conditions. J.Mol.Biol. V. 363 174 2006.
ISSN: ISSN 0022-2836
PubMed: 16952371
DOI: 10.1016/J.JMB.2006.08.011
Page generated: Wed Jul 31 14:25:18 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy