Atomistry » Fluorine » PDB 2fq9-2gtm » 2g6w
Atomistry »
  Fluorine »
    PDB 2fq9-2gtm »
      2g6w »

Fluorine in PDB 2g6w: Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine

Enzymatic activity of Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine

All present enzymatic activity of Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine:
2.3.1.47;

Protein crystallography data

The structure of Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine, PDB code: 2g6w was solved by D.Alexeev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.41 / 2.14
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 58.670, 58.670, 198.970, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 24.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine (pdb code 2g6w). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine, PDB code: 2g6w:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 2g6w

Go back to Fluorine Binding Sites List in 2g6w
Fluorine binding site 1 out of 2 in the Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F436

b:51.7
occ:1.00
 F1 A:LLF436 0.0 51.7 1.0
CBF A:LLF436 1.4 51.7 1.0
CAF A:LLF436 2.3 52.2 1.0
F2 A:LLF436 2.4 53.0 1.0
NZ A:LYS236 2.4 47.3 1.0
ND2 A:ASN47 2.7 36.8 1.0
NF A:LLF436 3.6 52.0 1.0
CE A:LYS236 3.9 41.5 1.0
CG A:ASN47 3.9 34.8 1.0
C4A A:LLF436 4.2 52.9 1.0
CB A:ASN47 4.7 30.3 1.0
OD1 A:ASN47 4.8 35.5 1.0
O A:HOH633 4.9 54.8 1.0
OP3 A:LLF436 4.9 42.6 1.0
CD A:LYS236 4.9 37.8 1.0
CG A:LYS236 4.9 33.0 1.0

Fluorine binding site 2 out of 2 in 2g6w

Go back to Fluorine Binding Sites List in 2g6w
Fluorine binding site 2 out of 2 in the Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Suicide Inhibition of A-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-Oxonanoate Synthase with Trifluoroalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F436

b:53.0
occ:1.00
 F2 A:LLF436 0.0 53.0 1.0
CBF A:LLF436 1.5 51.7 1.0
F1 A:LLF436 2.4 51.7 1.0
CAF A:LLF436 2.5 52.2 1.0
ND2 A:ASN47 2.5 36.8 1.0
NZ A:LYS236 2.5 47.3 1.0
NF A:LLF436 2.7 52.0 1.0
CE A:LYS236 3.1 41.5 1.0
O A:HOH633 3.1 54.8 1.0
CE1 A:HIS207 3.5 34.9 1.0
O3 A:LLF436 3.6 52.5 1.0
CG A:ASN47 3.7 34.8 1.0
C4A A:LLF436 3.8 52.9 1.0
O A:HOH534 3.9 48.8 1.0
NE2 A:HIS207 3.9 30.7 1.0
OD1 A:ASN47 4.3 35.5 1.0
CD A:LYS236 4.4 37.8 1.0
CG A:LYS236 4.6 33.0 1.0
C3 A:LLF436 4.7 53.1 1.0
C4 A:LLF436 4.7 53.2 1.0
ND1 A:HIS207 4.8 33.7 1.0
CB A:ASN47 4.8 30.3 1.0
NH2 A:ARG361 4.9 48.0 1.0
OG A:SER179 5.0 44.5 1.0

Reference:

D.Alexeev, R.L.Baxter, D.J.Campopiano, O.Kerbarh, L.Sawyer, N.Tomczyk, R.Watt, S.P.Webster. Suicide Inhibition of Alpha-Oxamine Synthases: Structures of the Covalent Adducts of 8-Amino-7-Oxononanoate Synthase with Trifluoroalanine. Org.Biomol.Chem. V. 4 1209 2006.
ISSN: ISSN 1477-0520
PubMed: 16557306
DOI: 10.1039/B517922J
Page generated: Wed Jul 31 14:30:21 2024

Last articles

Cl in 3V4B
Cl in 3V45
Cl in 3V3Z
Cl in 3V3Y
Cl in 3V3W
Cl in 3V3I
Cl in 3V3H
Cl in 3V3V
Cl in 3V3G
Cl in 3V3F
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy