Fluorine in PDB 2gj9: Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
Protein crystallography data
The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+, PDB code: 2gj9
was solved by
A.Scrima,
A.Wittinghofer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
2.00
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.240,
70.100,
90.210,
90.00,
95.76,
90.00
|
|
R / Rfree (%)
|
25 /
29.9
|
Other elements in 2gj9:
The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Fluorine atom in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
(pdb code 2gj9). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the
Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+, PDB code: 2gj9:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 1 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:13.2
occ:1.00
|
F1
|
A:ALF401
|
0.0
|
13.2
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
15.1
|
1.0
|
|
O
|
A:HOH9
|
2.5
|
7.8
|
1.0
|
|
F4
|
A:ALF401
|
2.6
|
11.7
|
1.0
|
|
F3
|
A:ALF401
|
2.6
|
13.2
|
1.0
|
|
NZ
|
A:LYS229
|
2.7
|
9.2
|
1.0
|
|
N
|
A:GLY273
|
2.7
|
13.5
|
1.0
|
|
O2B
|
A:GDP400
|
2.8
|
9.0
|
1.0
|
|
CA
|
A:GLY273
|
3.1
|
14.2
|
1.0
|
|
CA
|
A:PRO225
|
3.3
|
12.6
|
1.0
|
|
O1B
|
A:GDP400
|
3.4
|
11.2
|
1.0
|
|
F2
|
A:ALF401
|
3.5
|
13.4
|
1.0
|
|
PB
|
A:GDP400
|
3.5
|
9.8
|
1.0
|
|
CE
|
A:LYS229
|
3.6
|
8.2
|
1.0
|
|
N
|
A:ASN226
|
3.8
|
12.3
|
1.0
|
|
C
|
A:ALA272
|
3.9
|
12.9
|
1.0
|
|
O
|
A:HOH8
|
3.9
|
10.5
|
1.0
|
|
O3B
|
A:GDP400
|
4.0
|
10.8
|
1.0
|
|
O
|
A:HOH12
|
4.1
|
8.0
|
1.0
|
|
C
|
A:PRO225
|
4.1
|
13.2
|
1.0
|
|
CB
|
A:PRO225
|
4.1
|
13.5
|
1.0
|
|
N
|
A:PRO225
|
4.1
|
12.6
|
1.0
|
|
MG
|
A:MG402
|
4.2
|
13.7
|
1.0
|
|
O
|
A:ARG224
|
4.2
|
11.5
|
1.0
|
|
O
|
A:THR271
|
4.4
|
14.6
|
1.0
|
|
CA
|
A:ALA272
|
4.4
|
12.1
|
1.0
|
|
C
|
A:GLY273
|
4.4
|
15.3
|
1.0
|
|
C
|
A:ARG224
|
4.5
|
11.3
|
1.0
|
|
CG
|
A:PRO225
|
4.7
|
11.6
|
1.0
|
|
O
|
A:GLY273
|
4.8
|
14.0
|
1.0
|
|
O
|
A:ALA272
|
4.9
|
11.5
|
1.0
|
|
CD
|
A:LYS229
|
4.9
|
12.0
|
1.0
|
|
O3A
|
A:GDP400
|
5.0
|
10.2
|
1.0
|
|
N
|
A:GLY249
|
5.0
|
12.8
|
1.0
|
|
Fluorine binding site 2 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 2 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:13.4
occ:1.00
|
F2
|
A:ALF401
|
0.0
|
13.4
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
15.1
|
1.0
|
|
F4
|
A:ALF401
|
2.3
|
11.7
|
1.0
|
|
F3
|
A:ALF401
|
2.5
|
13.2
|
1.0
|
|
N
|
A:THR250
|
2.6
|
12.9
|
1.0
|
|
O
|
A:HOH9
|
2.6
|
7.8
|
1.0
|
|
O2B
|
A:GDP400
|
2.8
|
9.0
|
1.0
|
|
RB
|
A:RB403
|
2.8
|
18.5
|
1.0
|
|
CB
|
A:THR250
|
3.1
|
12.0
|
1.0
|
|
CA
|
A:THR250
|
3.3
|
12.8
|
1.0
|
|
N
|
A:GLY249
|
3.3
|
12.8
|
1.0
|
|
N
|
A:THR251
|
3.4
|
13.0
|
1.0
|
|
F1
|
A:ALF401
|
3.5
|
13.2
|
1.0
|
|
O
|
A:HOH11
|
3.5
|
7.7
|
1.0
|
|
OG1
|
A:THR250
|
3.6
|
14.6
|
1.0
|
|
C
|
A:GLY249
|
3.6
|
14.4
|
1.0
|
|
O
|
A:ILE247
|
3.7
|
10.4
|
1.0
|
|
MG
|
A:MG402
|
3.8
|
13.7
|
1.0
|
|
CA
|
A:GLY249
|
3.8
|
13.4
|
1.0
|
|
C
|
A:THR250
|
3.8
|
12.9
|
1.0
|
|
PB
|
A:GDP400
|
4.0
|
9.8
|
1.0
|
|
C
|
A:ALA248
|
4.1
|
12.7
|
1.0
|
|
OG1
|
A:THR251
|
4.2
|
13.0
|
1.0
|
|
O3B
|
A:GDP400
|
4.3
|
10.8
|
1.0
|
|
CA
|
A:ALA248
|
4.4
|
11.4
|
1.0
|
|
CG2
|
A:THR250
|
4.4
|
11.2
|
1.0
|
|
CA
|
A:THR251
|
4.5
|
13.4
|
1.0
|
|
CB
|
A:THR251
|
4.5
|
14.7
|
1.0
|
|
O2A
|
A:GDP400
|
4.5
|
9.6
|
1.0
|
|
OD1
|
A:ASN226
|
4.6
|
12.9
|
1.0
|
|
O
|
A:THR251
|
4.6
|
15.4
|
1.0
|
|
C
|
A:ILE247
|
4.7
|
11.1
|
1.0
|
|
N
|
A:ASN226
|
4.7
|
12.3
|
1.0
|
|
O
|
A:GLY249
|
4.8
|
12.9
|
1.0
|
|
O3A
|
A:GDP400
|
4.8
|
10.2
|
1.0
|
|
O
|
A:HOH8
|
4.9
|
10.5
|
1.0
|
|
Fluorine binding site 3 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 3 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:13.2
occ:1.00
|
F3
|
A:ALF401
|
0.0
|
13.2
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
15.1
|
1.0
|
|
MG
|
A:MG402
|
2.0
|
13.7
|
1.0
|
|
O
|
A:HOH9
|
2.5
|
7.8
|
1.0
|
|
F2
|
A:ALF401
|
2.5
|
13.4
|
1.0
|
|
F1
|
A:ALF401
|
2.6
|
13.2
|
1.0
|
|
OG1
|
A:THR251
|
2.7
|
13.0
|
1.0
|
|
O2B
|
A:GDP400
|
2.8
|
9.0
|
1.0
|
|
CB
|
A:THR251
|
2.9
|
14.7
|
1.0
|
|
O
|
A:HOH12
|
2.9
|
8.0
|
1.0
|
|
O3B
|
A:GDP400
|
3.0
|
10.8
|
1.0
|
|
PB
|
A:GDP400
|
3.3
|
9.8
|
1.0
|
|
N
|
A:THR251
|
3.4
|
13.0
|
1.0
|
|
O
|
A:HOH11
|
3.4
|
7.7
|
1.0
|
|
F4
|
A:ALF401
|
3.5
|
11.7
|
1.0
|
|
CA
|
A:THR251
|
3.7
|
13.4
|
1.0
|
|
OG
|
A:SER230
|
3.9
|
14.5
|
1.0
|
|
O
|
A:THR251
|
4.0
|
15.4
|
1.0
|
|
O1B
|
A:GDP400
|
4.1
|
11.2
|
1.0
|
|
CG2
|
A:THR251
|
4.1
|
10.8
|
1.0
|
|
O
|
A:THR271
|
4.1
|
14.6
|
1.0
|
|
N
|
A:GLY273
|
4.3
|
13.5
|
1.0
|
|
C
|
A:THR251
|
4.3
|
15.8
|
1.0
|
|
NZ
|
A:LYS229
|
4.3
|
9.2
|
1.0
|
|
N
|
A:THR250
|
4.4
|
12.9
|
1.0
|
|
C
|
A:THR250
|
4.5
|
12.9
|
1.0
|
|
RB
|
A:RB403
|
4.5
|
18.5
|
1.0
|
|
CA
|
A:ALA272
|
4.6
|
12.1
|
1.0
|
|
CB
|
A:THR250
|
4.6
|
12.0
|
1.0
|
|
O3A
|
A:GDP400
|
4.7
|
10.2
|
1.0
|
|
CA
|
A:THR250
|
4.7
|
12.8
|
1.0
|
|
CE
|
A:LYS229
|
4.8
|
8.2
|
1.0
|
|
O2A
|
A:GDP400
|
4.9
|
9.6
|
1.0
|
|
C
|
A:ALA272
|
5.0
|
12.9
|
1.0
|
|
Fluorine binding site 4 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 4 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:11.7
occ:1.00
|
F4
|
A:ALF401
|
0.0
|
11.7
|
1.0
|
|
AL
|
A:ALF401
|
1.7
|
15.1
|
1.0
|
|
F2
|
A:ALF401
|
2.3
|
13.4
|
1.0
|
|
F1
|
A:ALF401
|
2.6
|
13.2
|
1.0
|
|
O2B
|
A:GDP400
|
2.6
|
9.0
|
1.0
|
|
O
|
A:HOH9
|
2.8
|
7.8
|
1.0
|
|
N
|
A:ASN226
|
2.9
|
12.3
|
1.0
|
|
N
|
A:GLY249
|
3.0
|
12.8
|
1.0
|
|
CA
|
A:PRO225
|
3.1
|
12.6
|
1.0
|
|
CB
|
A:PRO225
|
3.2
|
13.5
|
1.0
|
|
C
|
A:PRO225
|
3.4
|
13.2
|
1.0
|
|
F3
|
A:ALF401
|
3.5
|
13.2
|
1.0
|
|
CA
|
A:ALA248
|
3.6
|
11.4
|
1.0
|
|
RB
|
A:RB403
|
3.7
|
18.5
|
1.0
|
|
C
|
A:ALA248
|
3.7
|
12.7
|
1.0
|
|
OD1
|
A:ASN226
|
4.0
|
12.9
|
1.0
|
|
CA
|
A:GLY249
|
4.0
|
13.4
|
1.0
|
|
CA
|
A:ASN226
|
4.0
|
13.1
|
1.0
|
|
O
|
A:HOH8
|
4.0
|
10.5
|
1.0
|
|
PB
|
A:GDP400
|
4.0
|
9.8
|
1.0
|
|
CB
|
A:ALA248
|
4.1
|
9.2
|
1.0
|
|
N
|
A:THR250
|
4.2
|
12.9
|
1.0
|
|
O
|
A:ILE247
|
4.3
|
10.4
|
1.0
|
|
CG
|
A:PRO225
|
4.4
|
11.6
|
1.0
|
|
O1B
|
A:GDP400
|
4.4
|
11.2
|
1.0
|
|
CG
|
A:ASN226
|
4.5
|
13.8
|
1.0
|
|
N
|
A:PRO225
|
4.5
|
12.6
|
1.0
|
|
CB
|
A:ASN226
|
4.6
|
13.4
|
1.0
|
|
C
|
A:GLY249
|
4.6
|
14.4
|
1.0
|
|
O
|
A:PRO225
|
4.7
|
9.8
|
1.0
|
|
N
|
A:GLY273
|
4.7
|
13.5
|
1.0
|
|
N
|
A:ALA248
|
4.7
|
10.4
|
1.0
|
|
NZ
|
A:LYS229
|
4.8
|
9.2
|
1.0
|
|
O3A
|
A:GDP400
|
4.8
|
10.2
|
1.0
|
|
CA
|
A:GLY273
|
4.9
|
14.2
|
1.0
|
|
O3B
|
A:GDP400
|
4.9
|
10.8
|
1.0
|
|
O
|
A:ALA248
|
4.9
|
13.9
|
1.0
|
|
C
|
A:ILE247
|
5.0
|
11.1
|
1.0
|
|
Fluorine binding site 5 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 5 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:12.6
occ:1.00
|
F1
|
B:ALF501
|
0.0
|
12.6
|
1.0
|
|
AL
|
B:ALF501
|
1.7
|
15.2
|
1.0
|
|
MG
|
B:MG502
|
2.1
|
14.4
|
1.0
|
|
F4
|
B:ALF501
|
2.3
|
13.9
|
1.0
|
|
O
|
B:HOH14
|
2.4
|
12.7
|
1.0
|
|
F3
|
B:ALF501
|
2.6
|
16.1
|
1.0
|
|
O2B
|
B:GDP500
|
2.8
|
18.2
|
1.0
|
|
OG1
|
B:THR251
|
2.8
|
16.0
|
1.0
|
|
O3B
|
B:GDP500
|
2.9
|
19.4
|
1.0
|
|
CB
|
B:THR251
|
3.0
|
14.9
|
1.0
|
|
N
|
B:THR251
|
3.2
|
15.8
|
1.0
|
|
PB
|
B:GDP500
|
3.3
|
16.7
|
1.0
|
|
F2
|
B:ALF501
|
3.5
|
16.6
|
1.0
|
|
CA
|
B:THR251
|
3.6
|
15.6
|
1.0
|
|
OG
|
B:SER230
|
4.1
|
18.5
|
1.0
|
|
O
|
B:THR251
|
4.1
|
13.8
|
1.0
|
|
O1B
|
B:GDP500
|
4.2
|
15.0
|
1.0
|
|
O
|
B:THR271
|
4.3
|
19.0
|
1.0
|
|
N
|
B:THR250
|
4.3
|
17.0
|
1.0
|
|
C
|
B:THR250
|
4.4
|
16.6
|
1.0
|
|
C
|
B:THR251
|
4.4
|
14.9
|
1.0
|
|
N
|
B:GLY273
|
4.4
|
14.5
|
1.0
|
|
RB
|
B:RB503
|
4.4
|
25.8
|
1.0
|
|
CG2
|
B:THR251
|
4.4
|
16.0
|
1.0
|
|
NZ
|
B:LYS229
|
4.5
|
12.0
|
1.0
|
|
CB
|
B:THR250
|
4.6
|
15.2
|
1.0
|
|
O3A
|
B:GDP500
|
4.6
|
20.7
|
1.0
|
|
CE
|
B:LYS229
|
4.6
|
10.9
|
1.0
|
|
CA
|
B:THR250
|
4.7
|
15.2
|
1.0
|
|
CA
|
B:ALA272
|
4.8
|
14.2
|
1.0
|
|
O2A
|
B:GDP500
|
5.0
|
14.2
|
1.0
|
|
Fluorine binding site 6 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 6 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:16.6
occ:1.00
|
F2
|
B:ALF501
|
0.0
|
16.6
|
1.0
|
|
AL
|
B:ALF501
|
1.7
|
15.2
|
1.0
|
|
F3
|
B:ALF501
|
2.4
|
16.1
|
1.0
|
|
O2B
|
B:GDP500
|
2.5
|
18.2
|
1.0
|
|
F4
|
B:ALF501
|
2.6
|
13.9
|
1.0
|
|
O
|
B:HOH14
|
2.6
|
12.7
|
1.0
|
|
N
|
B:ASN226
|
3.0
|
18.9
|
1.0
|
|
CA
|
B:PRO225
|
3.1
|
18.1
|
1.0
|
|
N
|
B:GLY249
|
3.1
|
14.4
|
1.0
|
|
CB
|
B:PRO225
|
3.2
|
17.4
|
1.0
|
|
F1
|
B:ALF501
|
3.5
|
12.6
|
1.0
|
|
C
|
B:PRO225
|
3.5
|
19.3
|
1.0
|
|
RB
|
B:RB503
|
3.7
|
25.8
|
1.0
|
|
CA
|
B:ALA248
|
3.7
|
16.9
|
1.0
|
|
PB
|
B:GDP500
|
3.9
|
16.7
|
1.0
|
|
C
|
B:ALA248
|
3.9
|
15.9
|
1.0
|
|
O
|
B:HOH13
|
4.0
|
13.3
|
1.0
|
|
CA
|
B:GLY249
|
4.0
|
16.4
|
1.0
|
|
OD1
|
B:ASN226
|
4.0
|
22.8
|
1.0
|
|
CA
|
B:ASN226
|
4.1
|
20.1
|
1.0
|
|
N
|
B:THR250
|
4.2
|
17.0
|
1.0
|
|
CG
|
B:PRO225
|
4.3
|
17.7
|
1.0
|
|
CB
|
B:ALA248
|
4.4
|
17.4
|
1.0
|
|
N
|
B:PRO225
|
4.4
|
17.8
|
1.0
|
|
NZ
|
B:LYS229
|
4.5
|
12.0
|
1.0
|
|
O1B
|
B:GDP500
|
4.5
|
15.0
|
1.0
|
|
O
|
B:ILE247
|
4.5
|
19.8
|
1.0
|
|
N
|
B:GLY273
|
4.5
|
14.5
|
1.0
|
|
CG
|
B:ASN226
|
4.5
|
19.7
|
1.0
|
|
CA
|
B:GLY273
|
4.5
|
13.8
|
1.0
|
|
O
|
B:PRO225
|
4.7
|
19.9
|
1.0
|
|
C
|
B:GLY249
|
4.7
|
16.8
|
1.0
|
|
CB
|
B:ASN226
|
4.7
|
20.6
|
1.0
|
|
N
|
B:ALA248
|
4.8
|
18.1
|
1.0
|
|
O3B
|
B:GDP500
|
4.8
|
19.4
|
1.0
|
|
O3A
|
B:GDP500
|
4.9
|
20.7
|
1.0
|
|
O
|
B:ARG224
|
5.0
|
16.7
|
1.0
|
|
Fluorine binding site 7 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 7 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:16.1
occ:1.00
|
F3
|
B:ALF501
|
0.0
|
16.1
|
1.0
|
|
AL
|
B:ALF501
|
1.8
|
15.2
|
1.0
|
|
F2
|
B:ALF501
|
2.4
|
16.6
|
1.0
|
|
O
|
B:HOH14
|
2.4
|
12.7
|
1.0
|
|
NZ
|
B:LYS229
|
2.6
|
12.0
|
1.0
|
|
F1
|
B:ALF501
|
2.6
|
12.6
|
1.0
|
|
O2B
|
B:GDP500
|
2.7
|
18.2
|
1.0
|
|
N
|
B:GLY273
|
2.8
|
14.5
|
1.0
|
|
CA
|
B:GLY273
|
3.0
|
13.8
|
1.0
|
|
CE
|
B:LYS229
|
3.3
|
10.9
|
1.0
|
|
CA
|
B:PRO225
|
3.5
|
18.1
|
1.0
|
|
PB
|
B:GDP500
|
3.5
|
16.7
|
1.0
|
|
O1B
|
B:GDP500
|
3.5
|
15.0
|
1.0
|
|
F4
|
B:ALF501
|
3.6
|
13.9
|
1.0
|
|
N
|
B:ASN226
|
3.8
|
18.9
|
1.0
|
|
O3B
|
B:GDP500
|
3.9
|
19.4
|
1.0
|
|
C
|
B:ALA272
|
3.9
|
13.5
|
1.0
|
|
O
|
B:HOH13
|
3.9
|
13.3
|
1.0
|
|
O
|
B:ARG224
|
4.1
|
16.7
|
1.0
|
|
C
|
B:PRO225
|
4.1
|
19.3
|
1.0
|
|
CB
|
B:PRO225
|
4.3
|
17.4
|
1.0
|
|
MG
|
B:MG502
|
4.3
|
14.4
|
1.0
|
|
N
|
B:PRO225
|
4.3
|
17.8
|
1.0
|
|
O
|
B:THR271
|
4.3
|
19.0
|
1.0
|
|
C
|
B:GLY273
|
4.4
|
13.7
|
1.0
|
|
CA
|
B:ALA272
|
4.5
|
14.2
|
1.0
|
|
C
|
B:ARG224
|
4.6
|
17.3
|
1.0
|
|
CD
|
B:LYS229
|
4.7
|
15.4
|
1.0
|
|
O
|
B:ALA272
|
4.9
|
11.5
|
1.0
|
|
O
|
B:GLY273
|
4.9
|
13.0
|
1.0
|
|
CG
|
B:PRO225
|
4.9
|
17.7
|
1.0
|
|
O3A
|
B:GDP500
|
5.0
|
20.7
|
1.0
|
|
Fluorine binding site 8 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 8 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:13.9
occ:1.00
|
F4
|
B:ALF501
|
0.0
|
13.9
|
1.0
|
|
AL
|
B:ALF501
|
1.8
|
15.2
|
1.0
|
|
F1
|
B:ALF501
|
2.3
|
12.6
|
1.0
|
|
RB
|
B:RB503
|
2.6
|
25.8
|
1.0
|
|
F2
|
B:ALF501
|
2.6
|
16.6
|
1.0
|
|
O2B
|
B:GDP500
|
2.6
|
18.2
|
1.0
|
|
N
|
B:THR250
|
2.7
|
17.0
|
1.0
|
|
O
|
B:HOH14
|
2.7
|
12.7
|
1.0
|
|
CB
|
B:THR250
|
3.0
|
15.2
|
1.0
|
|
N
|
B:THR251
|
3.2
|
15.8
|
1.0
|
|
CA
|
B:THR250
|
3.2
|
15.2
|
1.0
|
|
OG1
|
B:THR250
|
3.5
|
15.9
|
1.0
|
|
F3
|
B:ALF501
|
3.6
|
16.1
|
1.0
|
|
N
|
B:GLY249
|
3.7
|
14.4
|
1.0
|
|
C
|
B:THR250
|
3.7
|
16.6
|
1.0
|
|
MG
|
B:MG502
|
3.7
|
14.4
|
1.0
|
|
O
|
B:ILE247
|
3.8
|
19.8
|
1.0
|
|
C
|
B:GLY249
|
3.8
|
16.8
|
1.0
|
|
PB
|
B:GDP500
|
3.8
|
16.7
|
1.0
|
|
CA
|
B:GLY249
|
4.1
|
16.4
|
1.0
|
|
O3B
|
B:GDP500
|
4.1
|
19.4
|
1.0
|
|
OG1
|
B:THR251
|
4.2
|
16.0
|
1.0
|
|
CG2
|
B:THR250
|
4.3
|
11.5
|
1.0
|
|
CA
|
B:THR251
|
4.4
|
15.6
|
1.0
|
|
C
|
B:ALA248
|
4.5
|
15.9
|
1.0
|
|
CB
|
B:THR251
|
4.5
|
14.9
|
1.0
|
|
O2A
|
B:GDP500
|
4.6
|
14.2
|
1.0
|
|
O3A
|
B:GDP500
|
4.6
|
20.7
|
1.0
|
|
OD1
|
B:ASN226
|
4.7
|
22.8
|
1.0
|
|
O
|
B:THR251
|
4.7
|
13.8
|
1.0
|
|
CA
|
B:ALA248
|
4.7
|
16.9
|
1.0
|
|
O
|
B:GLY249
|
4.9
|
17.3
|
1.0
|
|
C
|
B:ILE247
|
4.9
|
20.1
|
1.0
|
|
N
|
B:ASN226
|
4.9
|
18.9
|
1.0
|
|
O
|
B:THR250
|
4.9
|
16.0
|
1.0
|
|
Fluorine binding site 9 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 9 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F601
b:15.6
occ:1.00
|
F1
|
C:ALF601
|
0.0
|
15.6
|
1.0
|
|
AL
|
C:ALF601
|
1.8
|
15.0
|
1.0
|
|
F4
|
C:ALF601
|
2.4
|
12.3
|
1.0
|
|
O
|
C:HOH2
|
2.5
|
14.8
|
1.0
|
|
F3
|
C:ALF601
|
2.5
|
15.8
|
1.0
|
|
O2B
|
C:GDP600
|
2.7
|
13.1
|
1.0
|
|
NZ
|
C:LYS229
|
2.7
|
6.8
|
1.0
|
|
N
|
C:GLY273
|
2.8
|
14.9
|
1.0
|
|
CA
|
C:GLY273
|
3.0
|
15.3
|
1.0
|
|
CA
|
C:PRO225
|
3.2
|
15.9
|
1.0
|
|
O1B
|
C:GDP600
|
3.5
|
12.7
|
1.0
|
|
F2
|
C:ALF601
|
3.6
|
20.4
|
1.0
|
|
PB
|
C:GDP600
|
3.6
|
11.4
|
1.0
|
|
CE
|
C:LYS229
|
3.6
|
10.0
|
1.0
|
|
N
|
C:ASN226
|
3.6
|
15.4
|
1.0
|
|
O
|
C:HOH1
|
3.8
|
11.9
|
1.0
|
|
C
|
C:PRO225
|
3.9
|
14.8
|
1.0
|
|
C
|
C:ALA272
|
4.0
|
15.8
|
1.0
|
|
CB
|
C:PRO225
|
4.0
|
14.4
|
1.0
|
|
O
|
C:ARG224
|
4.0
|
14.9
|
1.0
|
|
O3B
|
C:GDP600
|
4.0
|
15.7
|
1.0
|
|
N
|
C:PRO225
|
4.0
|
16.4
|
1.0
|
|
O
|
C:HOH5
|
4.1
|
15.5
|
1.0
|
|
MG
|
C:MG602
|
4.2
|
15.6
|
1.0
|
|
C
|
C:ARG224
|
4.4
|
16.2
|
1.0
|
|
C
|
C:GLY273
|
4.4
|
15.8
|
1.0
|
|
O
|
C:THR271
|
4.5
|
15.2
|
1.0
|
|
CA
|
C:ALA272
|
4.6
|
15.2
|
1.0
|
|
CG
|
C:PRO225
|
4.6
|
15.5
|
1.0
|
|
N
|
C:GLY249
|
4.8
|
14.6
|
1.0
|
|
O
|
C:GLY273
|
4.9
|
15.5
|
1.0
|
|
CD
|
C:PRO225
|
4.9
|
14.9
|
1.0
|
|
O
|
C:ALA272
|
4.9
|
15.5
|
1.0
|
|
CA
|
C:ASN226
|
5.0
|
14.5
|
1.0
|
|
Fluorine binding site 10 out
of 16 in 2gj9
Go back to
Fluorine Binding Sites List in 2gj9
Fluorine binding site 10 out
of 16 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and Rb+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F601
b:20.4
occ:1.00
|
F2
|
C:ALF601
|
0.0
|
20.4
|
1.0
|
|
AL
|
C:ALF601
|
1.8
|
15.0
|
1.0
|
|
F4
|
C:ALF601
|
2.5
|
12.3
|
1.0
|
|
F3
|
C:ALF601
|
2.6
|
15.8
|
1.0
|
|
O2B
|
C:GDP600
|
2.7
|
13.1
|
1.0
|
|
N
|
C:THR250
|
2.7
|
15.9
|
1.0
|
|
RB
|
C:RB603
|
2.7
|
19.7
|
1.0
|
|
O
|
C:HOH2
|
2.7
|
14.8
|
1.0
|
|
CB
|
C:THR250
|
3.0
|
16.2
|
1.0
|
|
O
|
C:HOH4
|
3.1
|
9.9
|
1.0
|
|
N
|
C:THR251
|
3.2
|
15.0
|
1.0
|
|
CA
|
C:THR250
|
3.3
|
16.4
|
1.0
|
|
MG
|
C:MG602
|
3.5
|
15.6
|
1.0
|
|
N
|
C:GLY249
|
3.5
|
14.6
|
1.0
|
|
F1
|
C:ALF601
|
3.6
|
15.6
|
1.0
|
|
OG1
|
C:THR250
|
3.7
|
16.5
|
1.0
|
|
O
|
C:ILE247
|
3.7
|
14.8
|
1.0
|
|
C
|
C:THR250
|
3.7
|
14.7
|
1.0
|
|
C
|
C:GLY249
|
3.7
|
15.9
|
1.0
|
|
CA
|
C:GLY249
|
3.9
|
14.8
|
1.0
|
|
PB
|
C:GDP600
|
4.0
|
11.4
|
1.0
|
|
OG1
|
C:THR251
|
4.1
|
19.3
|
1.0
|
|
O3B
|
C:GDP600
|
4.1
|
15.7
|
1.0
|
|
CG2
|
C:THR250
|
4.2
|
17.2
|
1.0
|
|
O2A
|
C:GDP600
|
4.3
|
8.9
|
1.0
|
|
CA
|
C:THR251
|
4.3
|
15.5
|
1.0
|
|
C
|
C:ALA248
|
4.4
|
17.2
|
1.0
|
|
CB
|
C:THR251
|
4.4
|
14.9
|
1.0
|
|
O
|
C:THR251
|
4.5
|
15.5
|
1.0
|
|
CA
|
C:ALA248
|
4.7
|
16.4
|
1.0
|
|
OD1
|
C:ASN226
|
4.7
|
15.1
|
1.0
|
|
O3A
|
C:GDP600
|
4.8
|
11.2
|
1.0
|
|
C
|
C:ILE247
|
4.8
|
16.7
|
1.0
|
|
O
|
C:GLY249
|
4.8
|
17.6
|
1.0
|
|
N
|
C:ASN226
|
4.9
|
15.4
|
1.0
|
|
O
|
C:THR250
|
4.9
|
15.7
|
1.0
|
|
C
|
C:THR251
|
4.9
|
14.4
|
1.0
|
|
Reference:
A.Scrima,
A.Wittinghofer.
Dimerisation-Dependent Gtpase Reaction of Mnme: How Potassium Acts As Gtpase-Activating Element. Embo J. V. 25 2940 2006.
ISSN: ISSN 0261-4189
PubMed: 16763562
DOI: 10.1038/SJ.EMBOJ.7601171
Page generated: Sun Dec 13 11:36:34 2020
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