Fluorine in PDB 2gja: Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
Protein crystallography data
The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+, PDB code: 2gja
was solved by
A.Scrima,
A.Wittinghofer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.37 /
1.85
|
|
Space group
|
C 2 2 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.280,
90.650,
138.470,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19.5 /
22.8
|
Other elements in 2gja:
The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
(pdb code 2gja). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+, PDB code: 2gja:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 1 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:12.9
occ:1.00
|
F1
|
A:ALF401
|
0.0
|
12.9
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
11.2
|
1.0
|
|
F4
|
A:ALF401
|
2.5
|
13.5
|
1.0
|
|
F3
|
A:ALF401
|
2.5
|
15.8
|
1.0
|
|
NZ
|
A:LYS229
|
2.6
|
11.7
|
1.0
|
|
O2B
|
A:GDP400
|
2.6
|
7.8
|
1.0
|
|
O
|
A:HOH2
|
2.6
|
9.2
|
1.0
|
|
N
|
A:GLY273
|
2.8
|
11.5
|
1.0
|
|
CA
|
A:GLY273
|
3.0
|
10.9
|
1.0
|
|
CE
|
A:LYS229
|
3.4
|
9.6
|
1.0
|
|
PB
|
A:GDP400
|
3.4
|
10.4
|
1.0
|
|
O1B
|
A:GDP400
|
3.5
|
11.4
|
1.0
|
|
CA
|
A:PRO225
|
3.5
|
9.3
|
1.0
|
|
F2
|
A:ALF401
|
3.5
|
12.7
|
1.0
|
|
O3B
|
A:GDP400
|
3.9
|
8.6
|
1.0
|
|
O
|
A:HOH100
|
3.9
|
13.2
|
1.0
|
|
C
|
A:ALA272
|
3.9
|
11.5
|
1.0
|
|
N
|
A:ASN226
|
3.9
|
11.6
|
1.0
|
|
O
|
A:HOH1
|
4.1
|
15.2
|
1.0
|
|
MG
|
A:MG402
|
4.1
|
11.5
|
1.0
|
|
O
|
A:ARG224
|
4.2
|
9.7
|
1.0
|
|
C
|
A:PRO225
|
4.2
|
10.3
|
1.0
|
|
CB
|
A:PRO225
|
4.3
|
10.1
|
1.0
|
|
O
|
A:THR271
|
4.3
|
13.4
|
1.0
|
|
N
|
A:PRO225
|
4.3
|
9.8
|
1.0
|
|
C
|
A:GLY273
|
4.4
|
11.4
|
1.0
|
|
CA
|
A:ALA272
|
4.5
|
11.4
|
1.0
|
|
C
|
A:ARG224
|
4.6
|
10.2
|
1.0
|
|
CG
|
A:PRO225
|
4.7
|
10.2
|
1.0
|
|
O
|
A:ALA272
|
4.9
|
10.4
|
1.0
|
|
CD
|
A:LYS229
|
4.9
|
7.8
|
1.0
|
|
O
|
A:GLY273
|
4.9
|
10.9
|
1.0
|
|
O3A
|
A:GDP400
|
4.9
|
7.8
|
1.0
|
|
N
|
A:GLY249
|
5.0
|
11.3
|
1.0
|
|
CB
|
A:THR251
|
5.0
|
11.6
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 2 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:12.7
occ:1.00
|
F2
|
A:ALF401
|
0.0
|
12.7
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
11.2
|
1.0
|
|
F3
|
A:ALF401
|
2.5
|
15.8
|
1.0
|
|
F4
|
A:ALF401
|
2.5
|
13.5
|
1.0
|
|
N
|
A:NH4403
|
2.5
|
11.4
|
1.0
|
|
O2B
|
A:GDP400
|
2.6
|
7.8
|
1.0
|
|
N
|
A:THR250
|
2.7
|
11.7
|
1.0
|
|
O
|
A:HOH2
|
2.8
|
9.2
|
1.0
|
|
CB
|
A:THR250
|
3.1
|
11.8
|
1.0
|
|
N
|
A:THR251
|
3.3
|
11.3
|
1.0
|
|
CA
|
A:THR250
|
3.4
|
11.6
|
1.0
|
|
N
|
A:GLY249
|
3.4
|
11.3
|
1.0
|
|
O
|
A:HOH101
|
3.4
|
11.4
|
1.0
|
|
F1
|
A:ALF401
|
3.5
|
12.9
|
1.0
|
|
O
|
A:ILE247
|
3.5
|
14.0
|
1.0
|
|
OG1
|
A:THR250
|
3.7
|
13.7
|
1.0
|
|
C
|
A:GLY249
|
3.8
|
12.1
|
1.0
|
|
MG
|
A:MG402
|
3.8
|
11.5
|
1.0
|
|
C
|
A:THR250
|
3.9
|
12.3
|
1.0
|
|
PB
|
A:GDP400
|
3.9
|
10.4
|
1.0
|
|
CA
|
A:GLY249
|
3.9
|
12.0
|
1.0
|
|
O3B
|
A:GDP400
|
4.1
|
8.6
|
1.0
|
|
C
|
A:ALA248
|
4.2
|
13.3
|
1.0
|
|
OG1
|
A:THR251
|
4.4
|
10.5
|
1.0
|
|
O2A
|
A:GDP400
|
4.4
|
10.0
|
1.0
|
|
CG2
|
A:THR250
|
4.4
|
9.7
|
1.0
|
|
CA
|
A:ALA248
|
4.4
|
13.6
|
1.0
|
|
CA
|
A:THR251
|
4.5
|
11.8
|
1.0
|
|
CB
|
A:THR251
|
4.6
|
11.6
|
1.0
|
|
C
|
A:ILE247
|
4.6
|
14.6
|
1.0
|
|
O3A
|
A:GDP400
|
4.6
|
7.8
|
1.0
|
|
OD1
|
A:ASN226
|
4.7
|
14.6
|
1.0
|
|
N
|
A:ASN226
|
4.8
|
11.6
|
1.0
|
|
O
|
A:THR251
|
4.9
|
12.5
|
1.0
|
|
O
|
A:GLY249
|
4.9
|
13.3
|
1.0
|
|
N
|
A:ALA248
|
5.0
|
13.7
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 3 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:15.8
occ:1.00
|
F3
|
A:ALF401
|
0.0
|
15.8
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
11.2
|
1.0
|
|
MG
|
A:MG402
|
1.9
|
11.5
|
1.0
|
|
F2
|
A:ALF401
|
2.5
|
12.7
|
1.0
|
|
F1
|
A:ALF401
|
2.5
|
12.9
|
1.0
|
|
O2B
|
A:GDP400
|
2.6
|
7.8
|
1.0
|
|
O
|
A:HOH2
|
2.7
|
9.2
|
1.0
|
|
O
|
A:HOH100
|
2.7
|
13.2
|
1.0
|
|
OG1
|
A:THR251
|
2.7
|
10.5
|
1.0
|
|
O3B
|
A:GDP400
|
2.8
|
8.6
|
1.0
|
|
CB
|
A:THR251
|
2.9
|
11.6
|
1.0
|
|
O
|
A:HOH101
|
3.1
|
11.4
|
1.0
|
|
PB
|
A:GDP400
|
3.2
|
10.4
|
1.0
|
|
N
|
A:THR251
|
3.3
|
11.3
|
1.0
|
|
F4
|
A:ALF401
|
3.5
|
13.5
|
1.0
|
|
CA
|
A:THR251
|
3.7
|
11.8
|
1.0
|
|
OG
|
A:SER230
|
4.0
|
8.7
|
1.0
|
|
O1B
|
A:GDP400
|
4.1
|
11.4
|
1.0
|
|
O
|
A:THR251
|
4.2
|
12.5
|
1.0
|
|
CG2
|
A:THR251
|
4.3
|
12.7
|
1.0
|
|
O
|
A:THR271
|
4.3
|
13.4
|
1.0
|
|
N
|
A:GLY273
|
4.4
|
11.5
|
1.0
|
|
NZ
|
A:LYS229
|
4.4
|
11.7
|
1.0
|
|
N
|
A:NH4403
|
4.4
|
11.4
|
1.0
|
|
C
|
A:THR251
|
4.4
|
12.0
|
1.0
|
|
C
|
A:THR250
|
4.5
|
12.3
|
1.0
|
|
N
|
A:THR250
|
4.5
|
11.7
|
1.0
|
|
O3A
|
A:GDP400
|
4.5
|
7.8
|
1.0
|
|
CB
|
A:THR250
|
4.6
|
11.8
|
1.0
|
|
O2A
|
A:GDP400
|
4.8
|
10.0
|
1.0
|
|
CA
|
A:THR250
|
4.8
|
11.6
|
1.0
|
|
CE
|
A:LYS229
|
4.8
|
9.6
|
1.0
|
|
CA
|
A:ALA272
|
4.9
|
11.4
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 4 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:13.5
occ:1.00
|
F4
|
A:ALF401
|
0.0
|
13.5
|
1.0
|
|
AL
|
A:ALF401
|
1.8
|
11.2
|
1.0
|
|
F2
|
A:ALF401
|
2.5
|
12.7
|
1.0
|
|
F1
|
A:ALF401
|
2.5
|
12.9
|
1.0
|
|
O2B
|
A:GDP400
|
2.7
|
7.8
|
1.0
|
|
O
|
A:HOH2
|
2.7
|
9.2
|
1.0
|
|
N
|
A:GLY249
|
2.9
|
11.3
|
1.0
|
|
CB
|
A:PRO225
|
3.1
|
10.1
|
1.0
|
|
N
|
A:ASN226
|
3.1
|
11.6
|
1.0
|
|
CA
|
A:PRO225
|
3.1
|
9.3
|
1.0
|
|
C
|
A:PRO225
|
3.5
|
10.3
|
1.0
|
|
F3
|
A:ALF401
|
3.5
|
15.8
|
1.0
|
|
CA
|
A:ALA248
|
3.5
|
13.6
|
1.0
|
|
C
|
A:ALA248
|
3.7
|
13.3
|
1.0
|
|
N
|
A:NH4403
|
3.8
|
11.4
|
1.0
|
|
CA
|
A:GLY249
|
3.9
|
12.0
|
1.0
|
|
O
|
A:HOH1
|
3.9
|
15.2
|
1.0
|
|
CG
|
A:PRO225
|
4.0
|
10.2
|
1.0
|
|
PB
|
A:GDP400
|
4.1
|
10.4
|
1.0
|
|
CA
|
A:ASN226
|
4.2
|
11.9
|
1.0
|
|
N
|
A:THR250
|
4.2
|
11.7
|
1.0
|
|
CB
|
A:ALA248
|
4.2
|
13.7
|
1.0
|
|
OD1
|
A:ASN226
|
4.4
|
14.6
|
1.0
|
|
O
|
A:ILE247
|
4.4
|
14.0
|
1.0
|
|
N
|
A:PRO225
|
4.4
|
9.8
|
1.0
|
|
CA
|
A:GLY273
|
4.5
|
10.9
|
1.0
|
|
N
|
A:GLY273
|
4.5
|
11.5
|
1.0
|
|
C
|
A:GLY249
|
4.6
|
12.1
|
1.0
|
|
NZ
|
A:LYS229
|
4.6
|
11.7
|
1.0
|
|
O1B
|
A:GDP400
|
4.6
|
11.4
|
1.0
|
|
CG
|
A:ASN226
|
4.6
|
14.7
|
1.0
|
|
N
|
A:ALA248
|
4.7
|
13.7
|
1.0
|
|
O
|
A:PRO225
|
4.7
|
9.8
|
1.0
|
|
CB
|
A:ASN226
|
4.9
|
13.2
|
1.0
|
|
O
|
A:ALA248
|
4.9
|
12.3
|
1.0
|
|
O3B
|
A:GDP400
|
4.9
|
8.6
|
1.0
|
|
C
|
A:ILE247
|
5.0
|
14.6
|
1.0
|
|
O3A
|
A:GDP400
|
5.0
|
7.8
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 5 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:15.4
occ:1.00
|
F1
|
B:ALF501
|
0.0
|
15.4
|
1.0
|
|
AL
|
B:ALF501
|
1.8
|
13.4
|
1.0
|
|
NZ
|
B:LYS229
|
2.5
|
10.7
|
1.0
|
|
F3
|
B:ALF501
|
2.5
|
14.9
|
1.0
|
|
F4
|
B:ALF501
|
2.6
|
16.4
|
1.0
|
|
O2B
|
B:GDP500
|
2.6
|
6.6
|
1.0
|
|
O
|
B:HOH99
|
2.6
|
9.9
|
1.0
|
|
N
|
B:GLY273
|
2.7
|
12.4
|
1.0
|
|
CA
|
B:GLY273
|
3.0
|
12.0
|
1.0
|
|
CE
|
B:LYS229
|
3.3
|
12.0
|
1.0
|
|
PB
|
B:GDP500
|
3.4
|
10.1
|
1.0
|
|
CA
|
B:PRO225
|
3.5
|
11.4
|
1.0
|
|
O1B
|
B:GDP500
|
3.5
|
11.8
|
1.0
|
|
F2
|
B:ALF501
|
3.6
|
14.8
|
1.0
|
|
N
|
B:ASN226
|
3.9
|
11.1
|
1.0
|
|
C
|
B:ALA272
|
3.9
|
12.1
|
1.0
|
|
O
|
B:HOH114
|
4.0
|
11.3
|
1.0
|
|
O
|
B:HOH4
|
4.0
|
14.3
|
1.0
|
|
O3B
|
B:GDP500
|
4.0
|
9.6
|
1.0
|
|
MG
|
B:MG502
|
4.1
|
11.8
|
1.0
|
|
O
|
B:ARG224
|
4.2
|
11.6
|
1.0
|
|
C
|
B:PRO225
|
4.2
|
12.1
|
1.0
|
|
CB
|
B:PRO225
|
4.2
|
12.2
|
1.0
|
|
N
|
B:PRO225
|
4.3
|
11.8
|
1.0
|
|
O
|
B:THR271
|
4.3
|
14.2
|
1.0
|
|
C
|
B:GLY273
|
4.4
|
12.6
|
1.0
|
|
CA
|
B:ALA272
|
4.5
|
12.4
|
1.0
|
|
C
|
B:ARG224
|
4.6
|
11.3
|
1.0
|
|
CG
|
B:PRO225
|
4.7
|
12.1
|
1.0
|
|
CD
|
B:LYS229
|
4.8
|
11.2
|
1.0
|
|
O
|
B:GLY273
|
4.8
|
10.9
|
1.0
|
|
O
|
B:ALA272
|
4.9
|
11.7
|
1.0
|
|
O3A
|
B:GDP500
|
4.9
|
10.6
|
1.0
|
|
N
|
B:GLY249
|
5.0
|
13.1
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 6 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:14.8
occ:1.00
|
F2
|
B:ALF501
|
0.0
|
14.8
|
1.0
|
|
AL
|
B:ALF501
|
1.8
|
13.4
|
1.0
|
|
F4
|
B:ALF501
|
2.5
|
16.4
|
1.0
|
|
F3
|
B:ALF501
|
2.5
|
14.9
|
1.0
|
|
O2B
|
B:GDP500
|
2.6
|
6.6
|
1.0
|
|
N
|
B:NH4503
|
2.6
|
8.7
|
1.0
|
|
N
|
B:THR250
|
2.7
|
11.8
|
1.0
|
|
O
|
B:HOH99
|
2.7
|
9.9
|
1.0
|
|
CB
|
B:THR250
|
3.1
|
11.9
|
1.0
|
|
CA
|
B:THR250
|
3.3
|
12.2
|
1.0
|
|
N
|
B:THR251
|
3.4
|
10.6
|
1.0
|
|
N
|
B:GLY249
|
3.4
|
13.1
|
1.0
|
|
O
|
B:ILE247
|
3.5
|
15.9
|
1.0
|
|
O
|
B:HOH113
|
3.5
|
11.4
|
1.0
|
|
OG1
|
B:THR250
|
3.5
|
13.5
|
1.0
|
|
F1
|
B:ALF501
|
3.6
|
15.4
|
1.0
|
|
C
|
B:GLY249
|
3.7
|
13.0
|
1.0
|
|
MG
|
B:MG502
|
3.8
|
11.8
|
1.0
|
|
C
|
B:THR250
|
3.9
|
11.9
|
1.0
|
|
PB
|
B:GDP500
|
3.9
|
10.1
|
1.0
|
|
CA
|
B:GLY249
|
3.9
|
13.4
|
1.0
|
|
C
|
B:ALA248
|
4.1
|
15.2
|
1.0
|
|
O3B
|
B:GDP500
|
4.2
|
9.6
|
1.0
|
|
OG1
|
B:THR251
|
4.3
|
11.3
|
1.0
|
|
O2A
|
B:GDP500
|
4.3
|
10.0
|
1.0
|
|
CA
|
B:ALA248
|
4.3
|
15.0
|
1.0
|
|
CG2
|
B:THR250
|
4.4
|
10.5
|
1.0
|
|
CA
|
B:THR251
|
4.6
|
11.4
|
1.0
|
|
C
|
B:ILE247
|
4.6
|
17.0
|
1.0
|
|
O3A
|
B:GDP500
|
4.6
|
10.6
|
1.0
|
|
CB
|
B:THR251
|
4.6
|
10.6
|
1.0
|
|
OD1
|
B:ASN226
|
4.7
|
14.8
|
1.0
|
|
O
|
B:THR251
|
4.7
|
11.9
|
1.0
|
|
N
|
B:ASN226
|
4.8
|
11.1
|
1.0
|
|
O
|
B:GLY249
|
4.8
|
13.9
|
1.0
|
|
N
|
B:ALA248
|
5.0
|
15.5
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 7 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:14.9
occ:1.00
|
F3
|
B:ALF501
|
0.0
|
14.9
|
1.0
|
|
AL
|
B:ALF501
|
1.8
|
13.4
|
1.0
|
|
MG
|
B:MG502
|
1.9
|
11.8
|
1.0
|
|
F2
|
B:ALF501
|
2.5
|
14.8
|
1.0
|
|
F1
|
B:ALF501
|
2.5
|
15.4
|
1.0
|
|
O2B
|
B:GDP500
|
2.6
|
6.6
|
1.0
|
|
O
|
B:HOH99
|
2.6
|
9.9
|
1.0
|
|
O
|
B:HOH114
|
2.8
|
11.3
|
1.0
|
|
OG1
|
B:THR251
|
2.8
|
11.3
|
1.0
|
|
O3B
|
B:GDP500
|
2.9
|
9.6
|
1.0
|
|
CB
|
B:THR251
|
3.0
|
10.6
|
1.0
|
|
PB
|
B:GDP500
|
3.2
|
10.1
|
1.0
|
|
O
|
B:HOH113
|
3.2
|
11.4
|
1.0
|
|
N
|
B:THR251
|
3.3
|
10.6
|
1.0
|
|
F4
|
B:ALF501
|
3.5
|
16.4
|
1.0
|
|
CA
|
B:THR251
|
3.7
|
11.4
|
1.0
|
|
OG
|
B:SER230
|
4.0
|
11.2
|
1.0
|
|
O
|
B:THR251
|
4.1
|
11.9
|
1.0
|
|
O1B
|
B:GDP500
|
4.1
|
11.8
|
1.0
|
|
O
|
B:THR271
|
4.2
|
14.2
|
1.0
|
|
NZ
|
B:LYS229
|
4.2
|
10.7
|
1.0
|
|
N
|
B:GLY273
|
4.3
|
12.4
|
1.0
|
|
CG2
|
B:THR251
|
4.3
|
13.4
|
1.0
|
|
C
|
B:THR251
|
4.4
|
11.6
|
1.0
|
|
N
|
B:THR250
|
4.5
|
11.8
|
1.0
|
|
N
|
B:NH4503
|
4.5
|
8.7
|
1.0
|
|
C
|
B:THR250
|
4.5
|
11.9
|
1.0
|
|
O3A
|
B:GDP500
|
4.6
|
10.6
|
1.0
|
|
CE
|
B:LYS229
|
4.6
|
12.0
|
1.0
|
|
CB
|
B:THR250
|
4.6
|
11.9
|
1.0
|
|
CA
|
B:THR250
|
4.8
|
12.2
|
1.0
|
|
CA
|
B:ALA272
|
4.8
|
12.4
|
1.0
|
|
O2A
|
B:GDP500
|
4.8
|
10.0
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 2gja
Go back to
Fluorine Binding Sites List in 2gja
Fluorine binding site 8 out
of 8 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:16.4
occ:1.00
|
F4
|
B:ALF501
|
0.0
|
16.4
|
1.0
|
|
AL
|
B:ALF501
|
1.8
|
13.4
|
1.0
|
|
F2
|
B:ALF501
|
2.5
|
14.8
|
1.0
|
|
F1
|
B:ALF501
|
2.6
|
15.4
|
1.0
|
|
O2B
|
B:GDP500
|
2.6
|
6.6
|
1.0
|
|
O
|
B:HOH99
|
2.7
|
9.9
|
1.0
|
|
N
|
B:GLY249
|
2.9
|
13.1
|
1.0
|
|
CB
|
B:PRO225
|
3.1
|
12.2
|
1.0
|
|
CA
|
B:PRO225
|
3.1
|
11.4
|
1.0
|
|
N
|
B:ASN226
|
3.1
|
11.1
|
1.0
|
|
CA
|
B:ALA248
|
3.5
|
15.0
|
1.0
|
|
C
|
B:PRO225
|
3.5
|
12.1
|
1.0
|
|
F3
|
B:ALF501
|
3.5
|
14.9
|
1.0
|
|
C
|
B:ALA248
|
3.7
|
15.2
|
1.0
|
|
N
|
B:NH4503
|
3.9
|
8.7
|
1.0
|
|
CA
|
B:GLY249
|
3.9
|
13.4
|
1.0
|
|
O
|
B:HOH4
|
3.9
|
14.3
|
1.0
|
|
CG
|
B:PRO225
|
4.1
|
12.1
|
1.0
|
|
PB
|
B:GDP500
|
4.1
|
10.1
|
1.0
|
|
CB
|
B:ALA248
|
4.1
|
15.2
|
1.0
|
|
N
|
B:THR250
|
4.2
|
11.8
|
1.0
|
|
CA
|
B:ASN226
|
4.2
|
12.4
|
1.0
|
|
O
|
B:ILE247
|
4.3
|
15.9
|
1.0
|
|
OD1
|
B:ASN226
|
4.4
|
14.8
|
1.0
|
|
N
|
B:PRO225
|
4.4
|
11.8
|
1.0
|
|
CG
|
B:ASN226
|
4.6
|
16.1
|
1.0
|
|
N
|
B:GLY273
|
4.6
|
12.4
|
1.0
|
|
CA
|
B:GLY273
|
4.6
|
12.0
|
1.0
|
|
C
|
B:GLY249
|
4.6
|
13.0
|
1.0
|
|
N
|
B:ALA248
|
4.6
|
15.5
|
1.0
|
|
NZ
|
B:LYS229
|
4.6
|
10.7
|
1.0
|
|
O1B
|
B:GDP500
|
4.7
|
11.8
|
1.0
|
|
O
|
B:PRO225
|
4.7
|
11.6
|
1.0
|
|
CB
|
B:ASN226
|
4.8
|
13.1
|
1.0
|
|
O
|
B:ALA248
|
4.9
|
15.1
|
1.0
|
|
C
|
B:ILE247
|
4.9
|
17.0
|
1.0
|
|
O3A
|
B:GDP500
|
5.0
|
10.6
|
1.0
|
|
Reference:
A.Scrima,
A.Wittinghofer.
Dimerisation-Dependent Gtpase Reaction of Mnme: How Potassium Acts As Gtpase-Activating Element. Embo J. V. 25 2940 2006.
ISSN: ISSN 0261-4189
PubMed: 16763562
DOI: 10.1038/SJ.EMBOJ.7601171
Page generated: Mon Jul 14 13:15:59 2025
|
