Fluorine in PDB 2jxr: Structure of Yeast Proteinase A

All present enzymatic activity of Structure of Yeast Proteinase A:
3.4.23.25;

The structure of Structure of Yeast Proteinase A, PDB code: 2jxr was solved by C.F.Aguilar, M.Badasso, T.Dreyer, N.B.Cronin, M.P.Newman, J.B.Cooper, D.J.Hoover, S.P.Wood, M.S.Johnson, T.L.Blundell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.700, 86.700, 110.400, 90.00, 90.00, 120.00
R / Rfree (%)	n/a / n/a

The binding sites of Fluorine atom in the Structure of Yeast Proteinase A (pdb code 2jxr). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Structure of Yeast Proteinase A, PDB code: 2jxr:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Structure of Yeast Proteinase A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Yeast Proteinase A within 5.0Å range: probe atom residue distance (Å) B Occ A:F327 b:55.1 occ:1.00 F1 A:2Z3327 0.0 55.1 1.0 CM A:2Z3327 1.3 26.6 1.0 F2 A:2Z3327 2.1 55.5 1.0 C7 A:2Z3327 2.4 19.5 1.0 CH A:2Z3327 2.4 13.1 1.0 O4 A:2Z3327 2.8 41.8 1.0 OH1 A:2Z3327 2.9 20.0 1.0 N2 A:2Z3327 2.9 25.3 1.0 CA2 A:2Z3327 3.0 17.4 1.0 C4 A:2Z3327 3.3 37.5 1.0 N3 A:2Z3327 3.4 38.7 1.0 OH2 A:2Z3327 3.5 22.5 1.0 O3 A:2Z3327 3.5 39.7 1.0 CG1 A:2Z3327 3.7 20.7 1.0 OD2 A:ASP215 3.8 26.0 1.0 OG1 A:THR218 3.9 31.8 1.0 CE A:2Z3327 3.9 40.1 1.0 CA1 A:2Z3327 4.2 14.5 1.0 CB1 A:2Z3327 4.4 22.8 1.0 CD A:2Z3327 4.4 42.7 1.0 CB2 A:2Z3327 4.4 16.8 1.0 N A:GLY76 4.5 42.8 1.0 C8 A:2Z3327 4.5 26.1 1.0 CD1 A:ILE300 4.5 30.6 1.0 CG A:ASP215 4.9 12.0 1.0 CA A:GLY76 4.9 30.8 1.0

Fluorine binding site 2 out of 2 in the Structure of Yeast Proteinase A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Yeast Proteinase A within 5.0Å range: probe atom residue distance (Å) B Occ A:F327 b:55.5 occ:1.00 F2 A:2Z3327 0.0 55.5 1.0 CM A:2Z3327 1.4 26.6 1.0 F1 A:2Z3327 2.1 55.1 1.0 C7 A:2Z3327 2.3 19.5 1.0 CH A:2Z3327 2.4 13.1 1.0 N3 A:2Z3327 2.5 38.7 1.0 OH1 A:2Z3327 2.6 20.0 1.0 OH2 A:2Z3327 2.8 22.5 1.0 OD2 A:ASP215 3.3 26.0 1.0 O4 A:2Z3327 3.4 41.8 1.0 CA A:GLY34 3.5 14.3 1.0 O A:GLY34 3.5 34.9 1.0 C A:GLY34 3.6 34.2 1.0 CA2 A:2Z3327 3.7 17.4 1.0 C8 A:2Z3327 3.9 26.1 1.0 CG A:ASP215 4.2 12.0 1.0 N2 A:2Z3327 4.3 25.3 1.0 OD1 A:ASP215 4.3 23.4 1.0 CE1 A:TYR189 4.4 33.9 1.0 N A:SER35 4.5 22.2 1.0 N A:GLY34 4.6 18.2 1.0 OG1 A:THR218 4.7 31.8 1.0 CD1 A:TYR189 4.8 28.8 1.0 OD1 A:ASP32 4.8 29.2 1.0 CD1 A:ILE300 4.8 30.6 1.0 CB2 A:2Z3327 4.8 16.8 1.0 OD2 A:ASP32 4.9 17.1 1.0

C.F.Aguilar, N.B.Cronin, M.Badasso, T.Dreyer, M.P.Newman, J.B.Cooper, D.J.Hoover, S.P.Wood, M.S.Johnson, T.L.Blundell. The Three-Dimensional Structure at 2.4 A Resolution of Glycosylated Proteinase A From the Lysosome-Like Vacuole of Saccharomyces Cerevisiae. J.Mol.Biol. V. 267 899 1997.
ISSN: ISSN 0022-2836
PubMed: 9135120
DOI: 10.1006/JMBI.1996.0880