Fluorine in PDB 2m84: Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Fluorine atom in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
(pdb code 2m84). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the
Structure of 2'F-Rna/2'F-Ana Chimeric Duplex, PDB code: 2m84:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 1 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1
b:0.0
occ:1.00
|
F2'
|
A:CFZ1
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFZ1
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFZ1
|
2.0
|
0.0
|
1.0
|
H1'
|
A:CFZ1
|
2.2
|
0.0
|
1.0
|
C1'
|
A:CFZ1
|
2.3
|
0.0
|
1.0
|
C3'
|
A:CFZ1
|
2.5
|
0.0
|
1.0
|
H5'A
|
A:GF22
|
2.7
|
0.0
|
1.0
|
O4'
|
A:GF22
|
2.8
|
0.0
|
1.0
|
O3'
|
A:CFZ1
|
2.9
|
0.0
|
1.0
|
O2
|
A:CFZ1
|
2.9
|
0.0
|
1.0
|
H4'
|
A:CFZ1
|
3.1
|
0.0
|
1.0
|
N1
|
A:CFZ1
|
3.2
|
0.0
|
1.0
|
C4'
|
A:CFZ1
|
3.2
|
0.0
|
1.0
|
C5'
|
A:GF22
|
3.3
|
0.0
|
1.0
|
O5'
|
A:GF22
|
3.3
|
0.0
|
1.0
|
O4'
|
A:CFZ1
|
3.3
|
0.0
|
1.0
|
H3'
|
A:CFZ1
|
3.4
|
0.0
|
1.0
|
C2
|
A:CFZ1
|
3.5
|
0.0
|
1.0
|
C4'
|
A:GF22
|
3.5
|
0.0
|
1.0
|
H8
|
A:GF22
|
3.8
|
0.0
|
1.0
|
P
|
A:GF22
|
3.8
|
0.0
|
1.0
|
H4'
|
A:GF22
|
3.9
|
0.0
|
1.0
|
C1'
|
A:GF22
|
4.0
|
0.0
|
1.0
|
H1'
|
A:GF22
|
4.3
|
0.0
|
1.0
|
C8
|
A:GF22
|
4.3
|
0.0
|
1.0
|
N9
|
A:GF22
|
4.3
|
0.0
|
1.0
|
H5'
|
A:GF22
|
4.3
|
0.0
|
1.0
|
C6
|
A:CFZ1
|
4.3
|
0.0
|
1.0
|
H6
|
A:CFZ1
|
4.6
|
0.0
|
1.0
|
OP1
|
A:GF22
|
4.7
|
0.0
|
1.0
|
C5'
|
A:CFZ1
|
4.7
|
0.0
|
1.0
|
OP2
|
A:GF22
|
4.8
|
0.0
|
1.0
|
N3
|
A:CFZ1
|
4.8
|
0.0
|
1.0
|
C3'
|
A:GF22
|
4.8
|
0.0
|
1.0
|
H3'
|
A:GF22
|
4.9
|
0.0
|
1.0
|
HN22
|
B:GFL24
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 2 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 2 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2
b:0.0
occ:1.00
|
F
|
A:GF22
|
0.0
|
0.0
|
1.0
|
C2'
|
A:GF22
|
1.4
|
0.0
|
1.0
|
H2'
|
A:GF22
|
2.0
|
0.0
|
1.0
|
H1'
|
A:GF22
|
2.1
|
0.0
|
1.0
|
C1'
|
A:GF22
|
2.2
|
0.0
|
1.0
|
C3'
|
A:GF22
|
2.5
|
0.0
|
1.0
|
H5'A
|
A:CFZ3
|
2.5
|
0.0
|
1.0
|
O4'
|
A:CFZ3
|
2.8
|
0.0
|
1.0
|
O3'
|
A:GF22
|
2.8
|
0.0
|
1.0
|
H4'
|
A:GF22
|
2.9
|
0.0
|
1.0
|
C4'
|
A:GF22
|
3.1
|
0.0
|
1.0
|
C5'
|
A:CFZ3
|
3.1
|
0.0
|
1.0
|
O5'
|
A:CFZ3
|
3.2
|
0.0
|
1.0
|
O4'
|
A:GF22
|
3.3
|
0.0
|
1.0
|
N9
|
A:GF22
|
3.3
|
0.0
|
1.0
|
H3'
|
A:GF22
|
3.4
|
0.0
|
1.0
|
C4'
|
A:CFZ3
|
3.4
|
0.0
|
1.0
|
N3
|
A:GF22
|
3.5
|
0.0
|
1.0
|
P
|
A:CFZ3
|
3.7
|
0.0
|
1.0
|
C4
|
A:GF22
|
3.7
|
0.0
|
1.0
|
H6
|
A:CFZ3
|
3.8
|
0.0
|
1.0
|
H4'
|
A:CFZ3
|
4.0
|
0.0
|
1.0
|
C1'
|
A:CFZ3
|
4.0
|
0.0
|
1.0
|
H5'
|
A:CFZ3
|
4.2
|
0.0
|
1.0
|
C6
|
A:CFZ3
|
4.4
|
0.0
|
1.0
|
H1'
|
A:CFZ3
|
4.4
|
0.0
|
1.0
|
C8
|
A:GF22
|
4.5
|
0.0
|
1.0
|
N1
|
A:CFZ3
|
4.5
|
0.0
|
1.0
|
C5'
|
A:GF22
|
4.6
|
0.0
|
1.0
|
O1P
|
A:CFZ3
|
4.6
|
0.0
|
1.0
|
O2P
|
A:CFZ3
|
4.6
|
0.0
|
1.0
|
C2
|
A:GF22
|
4.7
|
0.0
|
1.0
|
HN2
|
A:GF22
|
4.7
|
0.0
|
1.0
|
C3'
|
A:CFZ3
|
4.7
|
0.0
|
1.0
|
H3'
|
A:CFZ3
|
4.8
|
0.0
|
1.0
|
H8
|
A:GF22
|
4.9
|
0.0
|
1.0
|
H5'
|
A:GF22
|
4.9
|
0.0
|
1.0
|
C5
|
A:GF22
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 3 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 3 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F3
b:0.0
occ:1.00
|
F2'
|
A:CFZ3
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFZ3
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFZ3
|
2.0
|
0.0
|
1.0
|
H1'
|
A:CFZ3
|
2.1
|
0.0
|
1.0
|
C1'
|
A:CFZ3
|
2.2
|
0.0
|
1.0
|
C3'
|
A:CFZ3
|
2.5
|
0.0
|
1.0
|
O4'
|
A:GF24
|
2.8
|
0.0
|
1.0
|
H8
|
A:GF24
|
2.8
|
0.0
|
1.0
|
O3'
|
A:CFZ3
|
2.9
|
0.0
|
1.0
|
H4'
|
A:CFZ3
|
2.9
|
0.0
|
1.0
|
H5'A
|
A:GF24
|
3.0
|
0.0
|
1.0
|
O5'
|
A:GF24
|
3.1
|
0.0
|
1.0
|
C4'
|
A:CFZ3
|
3.2
|
0.0
|
1.0
|
N1
|
A:CFZ3
|
3.2
|
0.0
|
1.0
|
O2
|
A:CFZ3
|
3.2
|
0.0
|
1.0
|
O4'
|
A:CFZ3
|
3.3
|
0.0
|
1.0
|
H3'
|
A:CFZ3
|
3.4
|
0.0
|
1.0
|
C5'
|
A:GF24
|
3.4
|
0.0
|
1.0
|
C2
|
A:CFZ3
|
3.4
|
0.0
|
1.0
|
C8
|
A:GF24
|
3.4
|
0.0
|
1.0
|
P
|
A:GF24
|
3.6
|
0.0
|
1.0
|
C4'
|
A:GF24
|
3.7
|
0.0
|
1.0
|
N9
|
A:GF24
|
3.8
|
0.0
|
1.0
|
C1'
|
A:GF24
|
3.9
|
0.0
|
1.0
|
C6
|
A:CFZ3
|
4.1
|
0.0
|
1.0
|
OP2
|
A:GF24
|
4.2
|
0.0
|
1.0
|
HN22
|
B:GFL22
|
4.3
|
0.0
|
1.0
|
H4'
|
A:GF24
|
4.3
|
0.0
|
1.0
|
H1'
|
A:GF24
|
4.3
|
0.0
|
1.0
|
H6
|
A:CFZ3
|
4.4
|
0.0
|
1.0
|
N7
|
A:GF24
|
4.4
|
0.0
|
1.0
|
H5'
|
A:GF24
|
4.5
|
0.0
|
1.0
|
N3
|
A:CFZ3
|
4.6
|
0.0
|
1.0
|
C5'
|
A:CFZ3
|
4.6
|
0.0
|
1.0
|
H3'
|
A:GF24
|
4.8
|
0.0
|
1.0
|
C3'
|
A:GF24
|
4.8
|
0.0
|
1.0
|
OP1
|
A:GF24
|
4.8
|
0.0
|
1.0
|
H5'
|
A:CFZ3
|
4.9
|
0.0
|
1.0
|
C4
|
A:GF24
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 4 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 4 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F4
b:0.0
occ:1.00
|
F
|
A:GF24
|
0.0
|
0.0
|
1.0
|
C2'
|
A:GF24
|
1.4
|
0.0
|
1.0
|
H2'
|
A:GF24
|
2.0
|
0.0
|
1.0
|
H1'
|
A:GF24
|
2.2
|
0.0
|
1.0
|
C1'
|
A:GF24
|
2.2
|
0.0
|
1.0
|
C3'
|
A:GF24
|
2.5
|
0.0
|
1.0
|
H5'A
|
A:AF25
|
2.6
|
0.0
|
1.0
|
O3'
|
A:GF24
|
2.9
|
0.0
|
1.0
|
O4'
|
A:AF25
|
2.9
|
0.0
|
1.0
|
H4'
|
A:GF24
|
3.0
|
0.0
|
1.0
|
C4'
|
A:GF24
|
3.1
|
0.0
|
1.0
|
O4'
|
A:GF24
|
3.2
|
0.0
|
1.0
|
C5'
|
A:AF25
|
3.2
|
0.0
|
1.0
|
O5'
|
A:AF25
|
3.2
|
0.0
|
1.0
|
H3'
|
A:GF24
|
3.4
|
0.0
|
1.0
|
N9
|
A:GF24
|
3.4
|
0.0
|
1.0
|
C4'
|
A:AF25
|
3.5
|
0.0
|
1.0
|
H8
|
A:AF25
|
3.6
|
0.0
|
1.0
|
N3
|
A:GF24
|
3.7
|
0.0
|
1.0
|
P
|
A:AF25
|
3.7
|
0.0
|
1.0
|
H4'
|
A:AF25
|
3.8
|
0.0
|
1.0
|
C4
|
A:GF24
|
3.9
|
0.0
|
1.0
|
C1'
|
A:AF25
|
4.1
|
0.0
|
1.0
|
C8
|
A:AF25
|
4.2
|
0.0
|
1.0
|
H5'
|
A:AF25
|
4.2
|
0.0
|
1.0
|
H1'
|
A:AF25
|
4.4
|
0.0
|
1.0
|
N9
|
A:AF25
|
4.4
|
0.0
|
1.0
|
C8
|
A:GF24
|
4.5
|
0.0
|
1.0
|
OP2
|
A:AF25
|
4.6
|
0.0
|
1.0
|
C5'
|
A:GF24
|
4.6
|
0.0
|
1.0
|
OP1
|
A:AF25
|
4.7
|
0.0
|
1.0
|
H8
|
A:GF24
|
4.9
|
0.0
|
1.0
|
C3'
|
A:AF25
|
4.9
|
0.0
|
1.0
|
C2
|
A:GF24
|
4.9
|
0.0
|
1.0
|
HN2
|
A:GF24
|
4.9
|
0.0
|
1.0
|
H5'
|
A:GF24
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 5 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 5 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F5
b:0.0
occ:1.00
|
F
|
A:AF25
|
0.0
|
0.0
|
1.0
|
C2'
|
A:AF25
|
1.4
|
0.0
|
1.0
|
H2'
|
A:AF25
|
2.0
|
0.0
|
1.0
|
H1'
|
A:AF25
|
2.1
|
0.0
|
1.0
|
C1'
|
A:AF25
|
2.2
|
0.0
|
1.0
|
C3'
|
A:AF25
|
2.5
|
0.0
|
1.0
|
H5'A
|
A:AF26
|
2.5
|
0.0
|
1.0
|
O3'
|
A:AF25
|
2.8
|
0.0
|
1.0
|
O4'
|
A:AF26
|
2.9
|
0.0
|
1.0
|
H4'
|
A:AF25
|
3.0
|
0.0
|
1.0
|
C4'
|
A:AF25
|
3.1
|
0.0
|
1.0
|
C5'
|
A:AF26
|
3.2
|
0.0
|
1.0
|
O4'
|
A:AF25
|
3.2
|
0.0
|
1.0
|
O5'
|
A:AF26
|
3.3
|
0.0
|
1.0
|
H3'
|
A:AF25
|
3.4
|
0.0
|
1.0
|
N9
|
A:AF25
|
3.4
|
0.0
|
1.0
|
C4'
|
A:AF26
|
3.5
|
0.0
|
1.0
|
N3
|
A:AF25
|
3.7
|
0.0
|
1.0
|
P
|
A:AF26
|
3.8
|
0.0
|
1.0
|
H4'
|
A:AF26
|
3.8
|
0.0
|
1.0
|
H8
|
A:AF26
|
3.9
|
0.0
|
1.0
|
C4
|
A:AF25
|
3.9
|
0.0
|
1.0
|
C1'
|
A:AF26
|
4.1
|
0.0
|
1.0
|
H5'
|
A:AF26
|
4.2
|
0.0
|
1.0
|
H1'
|
A:AF26
|
4.4
|
0.0
|
1.0
|
C8
|
A:AF26
|
4.5
|
0.0
|
1.0
|
OP1
|
A:AF26
|
4.6
|
0.0
|
1.0
|
C8
|
A:AF25
|
4.6
|
0.0
|
1.0
|
N9
|
A:AF26
|
4.6
|
0.0
|
1.0
|
C5'
|
A:AF25
|
4.6
|
0.0
|
1.0
|
OP2
|
A:AF26
|
4.8
|
0.0
|
1.0
|
C3'
|
A:AF26
|
4.8
|
0.0
|
1.0
|
C2
|
A:AF25
|
4.9
|
0.0
|
1.0
|
H8
|
A:AF25
|
4.9
|
0.0
|
1.0
|
H3'
|
A:AF26
|
4.9
|
0.0
|
1.0
|
H5'
|
A:AF25
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 6 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 6 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F6
b:0.0
occ:1.00
|
F
|
A:AF26
|
0.0
|
0.0
|
1.0
|
C2'
|
A:AF26
|
1.4
|
0.0
|
1.0
|
H2'
|
A:AF26
|
2.0
|
0.0
|
1.0
|
H1'
|
A:AF26
|
2.1
|
0.0
|
1.0
|
C1'
|
A:AF26
|
2.2
|
0.0
|
1.0
|
H5''
|
A:TAF7
|
2.4
|
0.0
|
1.0
|
C3'
|
A:AF26
|
2.5
|
0.0
|
1.0
|
H4'
|
A:AF26
|
2.9
|
0.0
|
1.0
|
O3'
|
A:AF26
|
2.9
|
0.0
|
1.0
|
O4'
|
A:TAF7
|
3.0
|
0.0
|
1.0
|
C5'
|
A:TAF7
|
3.0
|
0.0
|
1.0
|
C4'
|
A:AF26
|
3.1
|
0.0
|
1.0
|
O5'
|
A:TAF7
|
3.1
|
0.0
|
1.0
|
O4'
|
A:AF26
|
3.2
|
0.0
|
1.0
|
N9
|
A:AF26
|
3.3
|
0.0
|
1.0
|
H3'
|
A:AF26
|
3.4
|
0.0
|
1.0
|
C4'
|
A:TAF7
|
3.4
|
0.0
|
1.0
|
H6
|
A:TAF7
|
3.4
|
0.0
|
1.0
|
N3
|
A:AF26
|
3.5
|
0.0
|
1.0
|
H4'
|
A:TAF7
|
3.7
|
0.0
|
1.0
|
C4
|
A:AF26
|
3.7
|
0.0
|
1.0
|
P
|
A:TAF7
|
3.7
|
0.0
|
1.0
|
H5'
|
A:TAF7
|
4.0
|
0.0
|
1.0
|
C6
|
A:TAF7
|
4.2
|
0.0
|
1.0
|
C1'
|
A:TAF7
|
4.3
|
0.0
|
1.0
|
C8
|
A:AF26
|
4.5
|
0.0
|
1.0
|
OP2
|
A:TAF7
|
4.5
|
0.0
|
1.0
|
N1
|
A:TAF7
|
4.6
|
0.0
|
1.0
|
C5'
|
A:AF26
|
4.6
|
0.0
|
1.0
|
C2
|
A:AF26
|
4.6
|
0.0
|
1.0
|
H72
|
A:TAF7
|
4.6
|
0.0
|
1.0
|
OP1
|
A:TAF7
|
4.8
|
0.0
|
1.0
|
C3'
|
A:TAF7
|
4.9
|
0.0
|
1.0
|
H1'
|
A:TAF7
|
4.9
|
0.0
|
1.0
|
H5'
|
A:AF26
|
4.9
|
0.0
|
1.0
|
H8
|
A:AF26
|
4.9
|
0.0
|
1.0
|
H2
|
A:AF26
|
4.9
|
0.0
|
1.0
|
C5
|
A:AF26
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 7 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 7 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F7
b:0.0
occ:1.00
|
F2'
|
A:TAF7
|
0.0
|
0.0
|
1.0
|
C2'
|
A:TAF7
|
1.4
|
0.0
|
1.0
|
H2'
|
A:TAF7
|
2.0
|
0.0
|
1.0
|
C3'
|
A:TAF7
|
2.4
|
0.0
|
1.0
|
H3'
|
A:TAF7
|
2.4
|
0.0
|
1.0
|
C1'
|
A:TAF7
|
2.4
|
0.0
|
1.0
|
H71
|
A:TAF8
|
2.5
|
0.0
|
1.0
|
H6
|
A:TAF8
|
2.6
|
0.0
|
1.0
|
N1
|
A:TAF7
|
2.7
|
0.0
|
1.0
|
H6
|
A:TAF7
|
2.8
|
0.0
|
1.0
|
C6
|
A:TAF7
|
2.8
|
0.0
|
1.0
|
O4'
|
A:TAF7
|
3.1
|
0.0
|
1.0
|
C4'
|
A:TAF7
|
3.2
|
0.0
|
1.0
|
H1'
|
A:TAF7
|
3.3
|
0.0
|
1.0
|
O5'
|
A:TAF7
|
3.3
|
0.0
|
1.0
|
C5M
|
A:TAF8
|
3.4
|
0.0
|
1.0
|
C6
|
A:TAF8
|
3.4
|
0.0
|
1.0
|
C2
|
A:TAF7
|
3.5
|
0.0
|
1.0
|
O3'
|
A:TAF7
|
3.6
|
0.0
|
1.0
|
C5'
|
A:TAF7
|
3.7
|
0.0
|
1.0
|
C5
|
A:TAF7
|
3.8
|
0.0
|
1.0
|
H72
|
A:TAF8
|
3.8
|
0.0
|
1.0
|
C5
|
A:TAF8
|
3.8
|
0.0
|
1.0
|
H5'
|
A:TAF7
|
4.1
|
0.0
|
1.0
|
O5'
|
A:TAF8
|
4.1
|
0.0
|
1.0
|
O2
|
A:TAF7
|
4.1
|
0.0
|
1.0
|
H4'
|
A:TAF7
|
4.1
|
0.0
|
1.0
|
O4'
|
A:TAF8
|
4.2
|
0.0
|
1.0
|
H73
|
A:TAF8
|
4.2
|
0.0
|
1.0
|
OP2
|
A:TAF8
|
4.3
|
0.0
|
1.0
|
P
|
A:TAF8
|
4.3
|
0.0
|
1.0
|
N3
|
A:TAF7
|
4.3
|
0.0
|
1.0
|
H72
|
A:TAF7
|
4.5
|
0.0
|
1.0
|
C4
|
A:TAF7
|
4.5
|
0.0
|
1.0
|
N1
|
A:TAF8
|
4.5
|
0.0
|
1.0
|
H2'
|
A:AF26
|
4.6
|
0.0
|
1.0
|
C5M
|
A:TAF7
|
4.6
|
0.0
|
1.0
|
P
|
A:TAF7
|
4.6
|
0.0
|
1.0
|
H71
|
A:TAF7
|
4.7
|
0.0
|
1.0
|
H5''
|
A:TAF7
|
4.7
|
0.0
|
1.0
|
OP2
|
A:TAF7
|
4.7
|
0.0
|
1.0
|
H5''
|
A:TAF8
|
4.8
|
0.0
|
1.0
|
C5'
|
A:TAF8
|
4.9
|
0.0
|
1.0
|
C1'
|
A:TAF8
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 8 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 8 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F8
b:0.0
occ:1.00
|
F2'
|
A:TAF8
|
0.0
|
0.0
|
1.0
|
C2'
|
A:TAF8
|
1.4
|
0.0
|
1.0
|
H2'
|
A:TAF8
|
2.0
|
0.0
|
1.0
|
H6
|
A:CFL9
|
2.3
|
0.0
|
1.0
|
C3'
|
A:TAF8
|
2.4
|
0.0
|
1.0
|
H3'
|
A:TAF8
|
2.4
|
0.0
|
1.0
|
C1'
|
A:TAF8
|
2.4
|
0.0
|
1.0
|
N1
|
A:TAF8
|
2.7
|
0.0
|
1.0
|
H6
|
A:TAF8
|
2.9
|
0.0
|
1.0
|
C6
|
A:TAF8
|
3.0
|
0.0
|
1.0
|
O4'
|
A:TAF8
|
3.2
|
0.0
|
1.0
|
H1'
|
A:TAF8
|
3.2
|
0.0
|
1.0
|
C6
|
A:CFL9
|
3.3
|
0.0
|
1.0
|
O3'
|
A:TAF8
|
3.4
|
0.0
|
1.0
|
H5
|
A:CFL9
|
3.4
|
0.0
|
1.0
|
C4'
|
A:TAF8
|
3.4
|
0.0
|
1.0
|
O5'
|
A:CFL9
|
3.5
|
0.0
|
1.0
|
C2
|
A:TAF8
|
3.6
|
0.0
|
1.0
|
O2P
|
A:CFL9
|
3.7
|
0.0
|
1.0
|
C5
|
A:CFL9
|
3.8
|
0.0
|
1.0
|
P
|
A:CFL9
|
3.8
|
0.0
|
1.0
|
O4'
|
A:CFL9
|
3.9
|
0.0
|
1.0
|
C5
|
A:TAF8
|
4.0
|
0.0
|
1.0
|
O2
|
A:TAF8
|
4.0
|
0.0
|
1.0
|
H4'
|
A:TAF8
|
4.1
|
0.0
|
1.0
|
H5'2
|
A:CFL9
|
4.3
|
0.0
|
1.0
|
C5'
|
A:CFL9
|
4.3
|
0.0
|
1.0
|
O5'
|
A:TAF8
|
4.3
|
0.0
|
1.0
|
N1
|
A:CFL9
|
4.4
|
0.0
|
1.0
|
N3
|
A:TAF8
|
4.4
|
0.0
|
1.0
|
F
|
A:CFL9
|
4.5
|
0.0
|
1.0
|
C5'
|
A:TAF8
|
4.5
|
0.0
|
1.0
|
H2'
|
A:TAF7
|
4.6
|
0.0
|
1.0
|
C1'
|
A:CFL9
|
4.7
|
0.0
|
1.0
|
C4'
|
A:CFL9
|
4.7
|
0.0
|
1.0
|
C4
|
A:TAF8
|
4.7
|
0.0
|
1.0
|
H71
|
A:TAF8
|
4.7
|
0.0
|
1.0
|
C5M
|
A:TAF8
|
4.8
|
0.0
|
1.0
|
H73
|
A:TAF8
|
4.9
|
0.0
|
1.0
|
H3'
|
A:CFL9
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 9 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 9 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F9
b:0.0
occ:1.00
|
F
|
A:CFL9
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFL9
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFL9
|
2.0
|
0.0
|
1.0
|
C1'
|
A:CFL9
|
2.4
|
0.0
|
1.0
|
H3'
|
A:CFL9
|
2.4
|
0.0
|
1.0
|
C3'
|
A:CFL9
|
2.4
|
0.0
|
1.0
|
H8
|
A:GFL10
|
2.6
|
0.0
|
1.0
|
H6
|
A:CFL9
|
2.7
|
0.0
|
1.0
|
N1
|
A:CFL9
|
2.7
|
0.0
|
1.0
|
C6
|
A:CFL9
|
2.9
|
0.0
|
1.0
|
O4'
|
A:CFL9
|
3.0
|
0.0
|
1.0
|
H1'
|
A:CFL9
|
3.2
|
0.0
|
1.0
|
C4'
|
A:CFL9
|
3.3
|
0.0
|
1.0
|
C8
|
A:GFL10
|
3.4
|
0.0
|
1.0
|
O3'
|
A:CFL9
|
3.5
|
0.0
|
1.0
|
O2P
|
A:GFL10
|
3.8
|
0.0
|
1.0
|
C2
|
A:CFL9
|
3.8
|
0.0
|
1.0
|
O5'
|
A:CFL9
|
3.8
|
0.0
|
1.0
|
N7
|
A:GFL10
|
3.9
|
0.0
|
1.0
|
O5'
|
A:GFL10
|
3.9
|
0.0
|
1.0
|
C5
|
A:CFL9
|
3.9
|
0.0
|
1.0
|
P
|
A:GFL10
|
4.1
|
0.0
|
1.0
|
H4'
|
A:CFL9
|
4.1
|
0.0
|
1.0
|
C5'
|
A:CFL9
|
4.2
|
0.0
|
1.0
|
O2
|
A:CFL9
|
4.3
|
0.0
|
1.0
|
F2'
|
A:TAF8
|
4.5
|
0.0
|
1.0
|
F
|
A:GFL10
|
4.5
|
0.0
|
1.0
|
H5
|
A:CFL9
|
4.5
|
0.0
|
1.0
|
N9
|
A:GFL10
|
4.5
|
0.0
|
1.0
|
H2'
|
A:TAF8
|
4.6
|
0.0
|
1.0
|
O4'
|
A:GFL10
|
4.7
|
0.0
|
1.0
|
N3
|
A:CFL9
|
4.7
|
0.0
|
1.0
|
C4
|
A:CFL9
|
4.7
|
0.0
|
1.0
|
H5'1
|
A:CFL9
|
4.8
|
0.0
|
1.0
|
H5'2
|
A:GFL10
|
4.8
|
0.0
|
1.0
|
C5'
|
A:GFL10
|
4.9
|
0.0
|
1.0
|
H5'2
|
A:CFL9
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 10 out
of 24 in 2m84
Go back to
Fluorine Binding Sites List in 2m84
Fluorine binding site 10 out
of 24 in the Structure of 2'F-Rna/2'F-Ana Chimeric Duplex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structure of 2'F-Rna/2'F-Ana Chimeric Duplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F10
b:0.0
occ:1.00
|
F
|
A:GFL10
|
0.0
|
0.0
|
1.0
|
C2'
|
A:GFL10
|
1.4
|
0.0
|
1.0
|
H2'
|
A:GFL10
|
2.0
|
0.0
|
1.0
|
H3'
|
A:GFL10
|
2.3
|
0.0
|
1.0
|
H8
|
A:GFL10
|
2.4
|
0.0
|
1.0
|
C3'
|
A:GFL10
|
2.4
|
0.0
|
1.0
|
C1'
|
A:GFL10
|
2.4
|
0.0
|
1.0
|
N9
|
A:GFL10
|
2.8
|
0.0
|
1.0
|
C8
|
A:GFL10
|
2.8
|
0.0
|
1.0
|
O4'
|
A:GFL10
|
3.0
|
0.0
|
1.0
|
C4'
|
A:GFL10
|
3.2
|
0.0
|
1.0
|
H1'
|
A:GFL10
|
3.3
|
0.0
|
1.0
|
H6
|
A:CFL11
|
3.3
|
0.0
|
1.0
|
O5'
|
A:GFL10
|
3.4
|
0.0
|
1.0
|
O3'
|
A:GFL10
|
3.6
|
0.0
|
1.0
|
H5
|
A:CFL11
|
3.6
|
0.0
|
1.0
|
O2P
|
A:CFL11
|
3.7
|
0.0
|
1.0
|
H2'
|
A:CFL9
|
3.8
|
0.0
|
1.0
|
C5'
|
A:GFL10
|
3.9
|
0.0
|
1.0
|
N7
|
A:GFL10
|
3.9
|
0.0
|
1.0
|
C4
|
A:GFL10
|
4.0
|
0.0
|
1.0
|
C6
|
A:CFL11
|
4.1
|
0.0
|
1.0
|
H4'
|
A:GFL10
|
4.1
|
0.0
|
1.0
|
P
|
A:CFL11
|
4.2
|
0.0
|
1.0
|
C5
|
A:CFL11
|
4.2
|
0.0
|
1.0
|
O5'
|
A:CFL11
|
4.3
|
0.0
|
1.0
|
F
|
A:CFL9
|
4.5
|
0.0
|
1.0
|
C5
|
A:GFL10
|
4.5
|
0.0
|
1.0
|
H5'1
|
A:GFL10
|
4.5
|
0.0
|
1.0
|
H5'2
|
A:GFL10
|
4.6
|
0.0
|
1.0
|
C2'
|
A:CFL9
|
4.6
|
0.0
|
1.0
|
O2P
|
A:GFL10
|
4.7
|
0.0
|
1.0
|
P
|
A:GFL10
|
4.7
|
0.0
|
1.0
|
N3
|
A:GFL10
|
4.8
|
0.0
|
1.0
|
|
Reference:
N.Martin-Pintado,
G.F.Deleavey,
G.Portella,
R.Campos-Olivas,
M.Orozco,
M.J.Damha,
C.Gonzalez.
Backbone Fcho Hydrogen Bonds in 2'F-Substituted Nucleic Acids. Angew.Chem.Int.Ed.Engl. V. 52 12065 2013.
ISSN: ISSN 1433-7851
PubMed: 24115468
DOI: 10.1002/ANIE.201305710
Page generated: Wed Jul 31 15:06:14 2024
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