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Fluorine in PDB 2p55: X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp

Enzymatic activity of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp

All present enzymatic activity of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp:
2.7.12.2;

Protein crystallography data

The structure of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp, PDB code: 2p55 was solved by J.F.Ohren, A.G.Pavlovsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.80
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 81.634, 81.634, 129.086, 90.00, 90.00, 120.00
R / Rfree (%) 22.8 / 30.1

Other elements in 2p55:

The structure of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp (pdb code 2p55). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp, PDB code: 2p55:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2p55

Go back to Fluorine Binding Sites List in 2p55
Fluorine binding site 1 out of 3 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F9000

b:61.0
occ:1.00
F1 A:MRA9000 0.0 61.0 1.0
C14 A:MRA9000 1.3 59.9 1.0
C13 A:MRA9000 2.3 61.1 1.0
C9 A:MRA9000 2.4 60.6 1.0
H4 A:MRA9000 2.6 0.0 0.0
F2 A:MRA9000 2.7 71.4 1.0
N1 A:MRA9000 2.8 60.9 1.0
C4 A:MRA9000 3.0 63.0 1.0
C3 A:MRA9000 3.1 63.3 1.0
CD2 A:LEU115 3.1 71.6 1.0
CG2 A:VAL211 3.2 61.5 1.0
HN1 A:MRA9000 3.6 0.0 0.0
C12 A:MRA9000 3.6 63.9 1.0
C10 A:MRA9000 3.7 66.3 1.0
O A:PHE209 3.8 55.6 1.0
CD1 A:LEU215 4.0 67.7 1.0
C11 A:MRA9000 4.1 66.7 1.0
C5 A:MRA9000 4.2 65.8 1.0
C2 A:MRA9000 4.3 66.1 1.0
CD1 A:ILE141 4.4 70.3 1.0
H12 A:MRA9000 4.5 0.0 0.0
CD1 A:LEU118 4.5 71.1 1.0
N A:VAL211 4.5 60.3 1.0
CB A:VAL211 4.6 61.5 1.0
H5 A:MRA9000 4.6 0.0 0.0
CG A:LEU115 4.6 72.5 1.0
N A:SER212 4.8 62.6 1.0
CB A:SER212 4.8 63.8 1.0
C15 A:MRA9000 4.9 70.1 1.0
F3 A:MRA9000 5.0 67.6 1.0

Fluorine binding site 2 out of 3 in 2p55

Go back to Fluorine Binding Sites List in 2p55
Fluorine binding site 2 out of 3 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F9000

b:71.4
occ:1.00
F2 A:MRA9000 0.0 71.4 1.0
C13 A:MRA9000 1.3 61.1 1.0
C14 A:MRA9000 2.3 59.9 1.0
C12 A:MRA9000 2.4 63.9 1.0
H12 A:MRA9000 2.6 0.0 0.0
F1 A:MRA9000 2.7 61.0 1.0
N A:SER212 3.0 62.6 1.0
CB A:SER212 3.2 63.8 1.0
CA A:SER212 3.5 63.6 1.0
O A:SER212 3.6 64.2 1.0
N A:VAL211 3.6 60.3 1.0
C11 A:MRA9000 3.6 66.7 1.0
C9 A:MRA9000 3.6 60.6 1.0
CD1 A:LEU215 3.7 67.7 1.0
CG2 A:VAL211 3.8 61.5 1.0
CB A:LEU215 3.9 69.3 1.0
C A:SER212 4.0 64.3 1.0
O A:PHE209 4.0 55.6 1.0
C A:VAL211 4.0 61.9 1.0
C10 A:MRA9000 4.1 66.3 1.0
C A:GLY210 4.2 59.5 1.0
CA A:GLY210 4.2 58.3 1.0
CA A:VAL211 4.2 61.4 1.0
OG A:SER212 4.2 64.3 1.0
CD2 A:LEU115 4.3 71.6 1.0
H4 A:MRA9000 4.4 0.0 0.0
CG A:LEU215 4.5 69.0 1.0
H11 A:MRA9000 4.5 0.0 0.0
CB A:VAL211 4.6 61.5 1.0
CG1 A:ILE216 4.7 71.6 1.0
N1 A:MRA9000 4.8 60.9 1.0
C A:PHE209 4.9 56.0 1.0
N A:ILE216 4.9 70.7 1.0

Fluorine binding site 3 out of 3 in 2p55

Go back to Fluorine Binding Sites List in 2p55
Fluorine binding site 3 out of 3 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F9000

b:67.6
occ:1.00
F3 A:MRA9000 0.0 67.6 1.0
C2 A:MRA9000 1.3 66.1 1.0
HN1 A:MRA9000 2.2 0.0 0.0
C3 A:MRA9000 2.4 63.3 1.0
C1 A:MRA9000 2.4 66.9 1.0
H1 A:MRA9000 2.6 0.0 0.0
N1 A:MRA9000 2.7 60.9 1.0
OD1 A:ASP208 3.1 57.9 1.0
CD A:LYS97 3.4 69.6 1.0
CD1 A:ILE141 3.5 70.3 1.0
O1 A:MRA9000 3.5 71.7 1.0
C6 A:MRA9000 3.6 65.8 1.0
C4 A:MRA9000 3.7 63.0 1.0
CG2 A:ILE141 3.7 70.2 1.0
CB A:ILE141 3.9 70.4 1.0
C9 A:MRA9000 4.0 60.6 1.0
C5 A:MRA9000 4.1 65.8 1.0
SD A:MET143 4.2 66.2 1.0
CE A:LYS97 4.3 71.2 1.0
CG1 A:ILE141 4.3 70.2 1.0
CE A:MET143 4.3 65.7 1.0
NZ A:LYS97 4.3 71.6 1.0
CG A:ASP208 4.4 56.6 1.0
CG A:LYS97 4.4 69.2 1.0
CB A:LYS97 4.5 69.4 1.0
C15 A:MRA9000 4.5 70.1 1.0
H4 A:MRA9000 4.5 0.0 0.0
O A:HOH9040 4.8 20.0 1.0
C10 A:MRA9000 4.8 66.3 1.0
CA A:ASP208 4.8 56.2 1.0
N A:ASP208 4.8 56.8 1.0
C7 A:MRA9000 4.8 69.7 1.0
F1 A:MRA9000 5.0 61.0 1.0
C14 A:MRA9000 5.0 59.9 1.0

Reference:

J.A.Spicer, G.W.Rewcastle, M.D.Kaufman, S.L.Black, M.S.Plummer, W.A.Denny, J.Quin, A.B.Shahripour, S.D.Barrett, C.E.Whitehead, J.B.Milbank, J.F.Ohren, R.C.Gowan, C.Omer, H.S.Camp, N.Esmaeil, K.Moore, J.S.Sebolt-Leopold, S.Pryzbranowski, R.L.Merriman, D.F.Ortwine, J.S.Warmus, C.M.Flamme, A.G.Pavlovsky, H.Tecle. 4-Anilino-5-Carboxamido-2-Pyridone Derivatives As Noncompetitive Inhibitors of Mitogen-Activated Protein Kinase Kinase. J.Med.Chem. V. 50 5090 2007.
ISSN: ISSN 0022-2623
PubMed: 17880056
DOI: 10.1021/JM0704548
Page generated: Sun Dec 13 11:38:46 2020

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