Atomistry » Fluorine » PDB 2oh4-2pdk » 2p55
Atomistry »
  Fluorine »
    PDB 2oh4-2pdk »
      2p55 »

Fluorine in PDB 2p55: X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp

Enzymatic activity of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp

All present enzymatic activity of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp:
2.7.12.2;

Protein crystallography data

The structure of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp, PDB code: 2p55 was solved by J.F.Ohren, A.G.Pavlovsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.80
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 81.634, 81.634, 129.086, 90.00, 90.00, 120.00
R / Rfree (%) 22.8 / 30.1

Other elements in 2p55:

The structure of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp (pdb code 2p55). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp, PDB code: 2p55:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2p55

Go back to Fluorine Binding Sites List in 2p55
Fluorine binding site 1 out of 3 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F9000

b:61.0
occ:1.00
F1 A:MRA9000 0.0 61.0 1.0
C14 A:MRA9000 1.3 59.9 1.0
C13 A:MRA9000 2.3 61.1 1.0
C9 A:MRA9000 2.4 60.6 1.0
H4 A:MRA9000 2.6 0.0 0.0
F2 A:MRA9000 2.7 71.4 1.0
N1 A:MRA9000 2.8 60.9 1.0
C4 A:MRA9000 3.0 63.0 1.0
C3 A:MRA9000 3.1 63.3 1.0
CD2 A:LEU115 3.1 71.6 1.0
CG2 A:VAL211 3.2 61.5 1.0
HN1 A:MRA9000 3.6 0.0 0.0
C12 A:MRA9000 3.6 63.9 1.0
C10 A:MRA9000 3.7 66.3 1.0
O A:PHE209 3.8 55.6 1.0
CD1 A:LEU215 4.0 67.7 1.0
C11 A:MRA9000 4.1 66.7 1.0
C5 A:MRA9000 4.2 65.8 1.0
C2 A:MRA9000 4.3 66.1 1.0
CD1 A:ILE141 4.4 70.3 1.0
H12 A:MRA9000 4.5 0.0 0.0
CD1 A:LEU118 4.5 71.1 1.0
N A:VAL211 4.5 60.3 1.0
CB A:VAL211 4.6 61.5 1.0
H5 A:MRA9000 4.6 0.0 0.0
CG A:LEU115 4.6 72.5 1.0
N A:SER212 4.8 62.6 1.0
CB A:SER212 4.8 63.8 1.0
C15 A:MRA9000 4.9 70.1 1.0
F3 A:MRA9000 5.0 67.6 1.0

Fluorine binding site 2 out of 3 in 2p55

Go back to Fluorine Binding Sites List in 2p55
Fluorine binding site 2 out of 3 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F9000

b:71.4
occ:1.00
F2 A:MRA9000 0.0 71.4 1.0
C13 A:MRA9000 1.3 61.1 1.0
C14 A:MRA9000 2.3 59.9 1.0
C12 A:MRA9000 2.4 63.9 1.0
H12 A:MRA9000 2.6 0.0 0.0
F1 A:MRA9000 2.7 61.0 1.0
N A:SER212 3.0 62.6 1.0
CB A:SER212 3.2 63.8 1.0
CA A:SER212 3.5 63.6 1.0
O A:SER212 3.6 64.2 1.0
N A:VAL211 3.6 60.3 1.0
C11 A:MRA9000 3.6 66.7 1.0
C9 A:MRA9000 3.6 60.6 1.0
CD1 A:LEU215 3.7 67.7 1.0
CG2 A:VAL211 3.8 61.5 1.0
CB A:LEU215 3.9 69.3 1.0
C A:SER212 4.0 64.3 1.0
O A:PHE209 4.0 55.6 1.0
C A:VAL211 4.0 61.9 1.0
C10 A:MRA9000 4.1 66.3 1.0
C A:GLY210 4.2 59.5 1.0
CA A:GLY210 4.2 58.3 1.0
CA A:VAL211 4.2 61.4 1.0
OG A:SER212 4.2 64.3 1.0
CD2 A:LEU115 4.3 71.6 1.0
H4 A:MRA9000 4.4 0.0 0.0
CG A:LEU215 4.5 69.0 1.0
H11 A:MRA9000 4.5 0.0 0.0
CB A:VAL211 4.6 61.5 1.0
CG1 A:ILE216 4.7 71.6 1.0
N1 A:MRA9000 4.8 60.9 1.0
C A:PHE209 4.9 56.0 1.0
N A:ILE216 4.9 70.7 1.0

Fluorine binding site 3 out of 3 in 2p55

Go back to Fluorine Binding Sites List in 2p55
Fluorine binding site 3 out of 3 in the X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of X-Ray Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) in A Complex with Ligand and Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F9000

b:67.6
occ:1.00
F3 A:MRA9000 0.0 67.6 1.0
C2 A:MRA9000 1.3 66.1 1.0
HN1 A:MRA9000 2.2 0.0 0.0
C3 A:MRA9000 2.4 63.3 1.0
C1 A:MRA9000 2.4 66.9 1.0
H1 A:MRA9000 2.6 0.0 0.0
N1 A:MRA9000 2.7 60.9 1.0
OD1 A:ASP208 3.1 57.9 1.0
CD A:LYS97 3.4 69.6 1.0
CD1 A:ILE141 3.5 70.3 1.0
O1 A:MRA9000 3.5 71.7 1.0
C6 A:MRA9000 3.6 65.8 1.0
C4 A:MRA9000 3.7 63.0 1.0
CG2 A:ILE141 3.7 70.2 1.0
CB A:ILE141 3.9 70.4 1.0
C9 A:MRA9000 4.0 60.6 1.0
C5 A:MRA9000 4.1 65.8 1.0
SD A:MET143 4.2 66.2 1.0
CE A:LYS97 4.3 71.2 1.0
CG1 A:ILE141 4.3 70.2 1.0
CE A:MET143 4.3 65.7 1.0
NZ A:LYS97 4.3 71.6 1.0
CG A:ASP208 4.4 56.6 1.0
CG A:LYS97 4.4 69.2 1.0
CB A:LYS97 4.5 69.4 1.0
C15 A:MRA9000 4.5 70.1 1.0
H4 A:MRA9000 4.5 0.0 0.0
O A:HOH9040 4.8 20.0 1.0
C10 A:MRA9000 4.8 66.3 1.0
CA A:ASP208 4.8 56.2 1.0
N A:ASP208 4.8 56.8 1.0
C7 A:MRA9000 4.8 69.7 1.0
F1 A:MRA9000 5.0 61.0 1.0
C14 A:MRA9000 5.0 59.9 1.0

Reference:

J.A.Spicer, G.W.Rewcastle, M.D.Kaufman, S.L.Black, M.S.Plummer, W.A.Denny, J.Quin, A.B.Shahripour, S.D.Barrett, C.E.Whitehead, J.B.Milbank, J.F.Ohren, R.C.Gowan, C.Omer, H.S.Camp, N.Esmaeil, K.Moore, J.S.Sebolt-Leopold, S.Pryzbranowski, R.L.Merriman, D.F.Ortwine, J.S.Warmus, C.M.Flamme, A.G.Pavlovsky, H.Tecle. 4-Anilino-5-Carboxamido-2-Pyridone Derivatives As Noncompetitive Inhibitors of Mitogen-Activated Protein Kinase Kinase. J.Med.Chem. V. 50 5090 2007.
ISSN: ISSN 0022-2623
PubMed: 17880056
DOI: 10.1021/JM0704548
Page generated: Wed Jul 31 15:28:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy