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Fluorine in PDB 2pdf: Human Aldose Reductase Mutant L300P Complexed with Zopolrestat.

Enzymatic activity of Human Aldose Reductase Mutant L300P Complexed with Zopolrestat.

All present enzymatic activity of Human Aldose Reductase Mutant L300P Complexed with Zopolrestat.:
1.1.1.21;

Protein crystallography data

The structure of Human Aldose Reductase Mutant L300P Complexed with Zopolrestat., PDB code: 2pdf was solved by H.Steuber, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.56
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 40.400, 47.020, 47.280, 76.06, 67.52, 76.90
R / Rfree (%) 18.1 / 23

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Aldose Reductase Mutant L300P Complexed with Zopolrestat. (pdb code 2pdf). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Human Aldose Reductase Mutant L300P Complexed with Zopolrestat., PDB code: 2pdf:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2pdf

Go back to Fluorine Binding Sites List in 2pdf
Fluorine binding site 1 out of 3 in the Human Aldose Reductase Mutant L300P Complexed with Zopolrestat.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Aldose Reductase Mutant L300P Complexed with Zopolrestat. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:22.3
occ:1.00
F1 A:ZST600 0.0 22.3 1.0
C19 A:ZST600 1.4 16.7 1.0
F3 A:ZST600 2.0 22.5 1.0
F2 A:ZST600 2.2 19.7 1.0
C15 A:ZST600 2.4 12.5 1.0
C14 A:ZST600 2.9 12.9 1.0
CG2 A:THR113 3.2 15.8 1.0
OG1 A:THR113 3.3 14.2 1.0
CD A:PRO310 3.3 16.9 1.0
CE3 A:TRP111 3.3 13.4 1.0
C16 A:ZST600 3.5 16.3 1.0
CG A:PRO310 3.8 16.8 1.0
CB A:THR113 3.9 15.3 1.0
CZ3 A:TRP111 4.0 14.3 1.0
CB A:TRP111 4.1 12.6 1.0
CD2 A:TRP111 4.1 14.2 1.0
CD A:PRO112 4.1 11.2 1.0
C13 A:ZST600 4.2 15.7 1.0
CG A:PRO112 4.3 15.5 1.0
CG A:TRP111 4.4 13.7 1.0
CD1 A:TYR309 4.6 19.9 1.0
N A:THR113 4.6 12.2 1.0
C12 A:ZST600 4.7 17.0 1.0
N A:PRO310 4.7 17.5 1.0
N A:PRO112 4.8 14.7 1.0
CA A:TYR309 4.8 17.8 1.0
CA A:THR113 4.9 14.7 1.0
C11 A:ZST600 4.9 10.9 1.0
CE1 A:TYR309 5.0 22.4 1.0
CA A:TRP111 5.0 16.6 1.0

Fluorine binding site 2 out of 3 in 2pdf

Go back to Fluorine Binding Sites List in 2pdf
Fluorine binding site 2 out of 3 in the Human Aldose Reductase Mutant L300P Complexed with Zopolrestat.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Aldose Reductase Mutant L300P Complexed with Zopolrestat. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:19.7
occ:1.00
F2 A:ZST600 0.0 19.7 1.0
C19 A:ZST600 1.3 16.7 1.0
F3 A:ZST600 2.1 22.5 1.0
F1 A:ZST600 2.2 22.3 1.0
C15 A:ZST600 2.3 12.5 1.0
CB A:CYS303 2.9 23.2 1.0
C14 A:ZST600 3.1 12.9 1.0
C16 A:ZST600 3.3 16.3 1.0
CG2 A:THR113 3.4 15.8 1.0
CD1 A:TYR309 3.5 19.9 1.0
SG A:CYS303 3.5 29.0 1.0
OG1 A:THR113 3.7 14.2 1.0
CE1 A:TYR309 3.9 22.4 1.0
O A:CYS303 4.1 28.4 1.0
CB A:THR113 4.2 15.3 1.0
CD A:PRO310 4.2 16.9 1.0
CA A:CYS303 4.2 27.0 1.0
C13 A:ZST600 4.3 15.7 1.0
C A:CYS303 4.5 28.1 1.0
C12 A:ZST600 4.5 17.0 1.0
CG A:TYR309 4.6 21.1 1.0
CA A:TYR309 4.7 17.8 1.0
CB A:TYR309 4.8 18.1 1.0
C11 A:ZST600 4.9 10.9 1.0
CE1 A:PHE115 4.9 15.8 1.0
CE3 A:TRP111 4.9 13.4 1.0

Fluorine binding site 3 out of 3 in 2pdf

Go back to Fluorine Binding Sites List in 2pdf
Fluorine binding site 3 out of 3 in the Human Aldose Reductase Mutant L300P Complexed with Zopolrestat.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human Aldose Reductase Mutant L300P Complexed with Zopolrestat. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:22.5
occ:1.00
F3 A:ZST600 0.0 22.5 1.0
C19 A:ZST600 1.3 16.7 1.0
F1 A:ZST600 2.0 22.3 1.0
F2 A:ZST600 2.1 19.7 1.0
C15 A:ZST600 2.3 12.5 1.0
C16 A:ZST600 2.7 16.3 1.0
CD A:PRO310 3.3 16.9 1.0
CE1 A:TYR309 3.3 22.4 1.0
CD1 A:TYR309 3.4 19.9 1.0
C14 A:ZST600 3.6 12.9 1.0
CG A:PRO310 3.7 16.8 1.0
CZ3 A:TRP111 3.7 14.3 1.0
CE3 A:TRP111 3.7 13.4 1.0
C12 A:ZST600 4.1 17.0 1.0
CE2 A:PHE311 4.2 15.8 1.0
CB A:CYS303 4.3 23.2 1.0
CZ A:TYR309 4.4 21.7 1.0
CD2 A:PHE311 4.5 20.8 1.0
CG A:TYR309 4.5 21.1 1.0
N A:PRO310 4.6 17.5 1.0
CD A:PRO300 4.7 22.9 1.0
C13 A:ZST600 4.7 15.7 1.0
CG2 A:THR113 4.7 15.8 1.0
CD2 A:TRP111 4.8 14.2 1.0
CH2 A:TRP111 4.8 18.6 1.0
OH A:TYR309 4.8 25.6 1.0
C11 A:ZST600 4.9 10.9 1.0
CA A:TYR309 4.9 17.8 1.0
SG A:CYS303 5.0 29.0 1.0
CZ A:PHE311 5.0 17.8 1.0

Reference:

H.Steuber, A.Heine, A.Podjarny, G.Klebe. Merging the Binding Sites of Aldose and Aldehyde Reductase For Detection of Inhibitor Selectivity-Determining Features. J.Mol.Biol. V. 379 991 2008.
ISSN: ISSN 0022-2836
PubMed: 18495158
DOI: 10.1016/J.JMB.2008.03.063
Page generated: Sun Dec 13 11:38:54 2020

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