Fluorine in PDB 2q1l: Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Enzymatic activity of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
All present enzymatic activity of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors:
1.1.1.34;
Protein crystallography data
The structure of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors, PDB code: 2q1l
was solved by
A.Pavlovsky,
J.A.Pfefferkorn,
M.S.Harris,
B.C.Finzel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.49 /
2.05
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.732,
176.958,
76.735,
90.00,
118.83,
90.00
|
R / Rfree (%)
|
22.3 /
26.3
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
(pdb code 2q1l). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors, PDB code: 2q1l:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 1 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F876
b:44.0
occ:1.00
|
F1
|
A:882876
|
0.0
|
44.0
|
1.0
|
C30
|
A:882876
|
1.3
|
42.5
|
1.0
|
C24
|
A:882876
|
2.4
|
41.6
|
1.0
|
C15
|
A:882876
|
2.4
|
42.6
|
1.0
|
NH1
|
B:ARG590
|
2.9
|
39.0
|
1.0
|
OG
|
B:SER661
|
2.9
|
47.9
|
1.0
|
CD
|
B:ARG590
|
3.2
|
36.4
|
1.0
|
CG1
|
B:VAL683
|
3.3
|
30.7
|
1.0
|
CZ
|
B:ARG590
|
3.3
|
38.4
|
1.0
|
NE
|
B:ARG590
|
3.4
|
37.6
|
1.0
|
C21
|
A:882876
|
3.6
|
40.8
|
1.0
|
C18
|
A:882876
|
3.7
|
41.7
|
1.0
|
CG2
|
B:VAL683
|
3.7
|
30.6
|
1.0
|
CB
|
B:VAL683
|
4.1
|
30.1
|
1.0
|
C27
|
A:882876
|
4.1
|
40.3
|
1.0
|
CB
|
B:SER661
|
4.2
|
46.9
|
1.0
|
NH2
|
B:ARG590
|
4.3
|
37.6
|
1.0
|
O
|
B:VAL683
|
4.3
|
29.2
|
1.0
|
C
|
B:VAL683
|
4.3
|
29.4
|
1.0
|
CG
|
B:ARG590
|
4.5
|
34.1
|
1.0
|
N
|
B:SER684
|
4.5
|
28.9
|
1.0
|
CB
|
B:SER684
|
4.6
|
28.6
|
1.0
|
O
|
B:HOH983
|
4.7
|
39.6
|
1.0
|
CA
|
B:VAL683
|
4.8
|
30.1
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 2 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F876
b:40.2
occ:1.00
|
F2
|
A:882876
|
0.0
|
40.2
|
1.0
|
C28
|
A:882876
|
1.3
|
38.5
|
1.0
|
C22
|
A:882876
|
2.4
|
37.8
|
1.0
|
C19
|
A:882876
|
2.4
|
37.6
|
1.0
|
N
|
A:HIS861
|
2.9
|
56.7
|
1.0
|
CA
|
A:HIS861
|
3.3
|
58.0
|
1.0
|
O
|
A:ALA856
|
3.3
|
35.5
|
1.0
|
CD2
|
A:HIS861
|
3.4
|
61.6
|
1.0
|
C25
|
A:882876
|
3.6
|
37.5
|
1.0
|
C16
|
A:882876
|
3.6
|
36.6
|
1.0
|
O
|
B:HOH983
|
4.0
|
39.6
|
1.0
|
C
|
A:GLY860
|
4.1
|
55.1
|
1.0
|
C31
|
A:882876
|
4.1
|
36.9
|
1.0
|
CG
|
A:HIS861
|
4.1
|
60.1
|
1.0
|
C
|
A:ALA856
|
4.2
|
35.4
|
1.0
|
CB
|
A:HIS861
|
4.2
|
58.4
|
1.0
|
O
|
A:HOH978
|
4.2
|
83.7
|
1.0
|
CA
|
A:GLY860
|
4.4
|
53.5
|
1.0
|
C
|
A:HIS861
|
4.4
|
58.2
|
1.0
|
NE2
|
A:HIS861
|
4.5
|
62.5
|
1.0
|
CB
|
A:ALA856
|
4.5
|
34.5
|
1.0
|
N
|
A:GLY860
|
4.8
|
52.0
|
1.0
|
CA
|
A:ALA856
|
4.8
|
34.7
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 3 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F877
b:39.4
occ:1.00
|
F1
|
A:882877
|
0.0
|
39.4
|
1.0
|
C30
|
A:882877
|
1.3
|
36.2
|
1.0
|
C24
|
A:882877
|
2.3
|
35.3
|
1.0
|
C15
|
A:882877
|
2.4
|
36.1
|
1.0
|
NE
|
A:ARG590
|
2.9
|
27.3
|
1.0
|
OG
|
A:SER661
|
3.1
|
35.1
|
1.0
|
CZ
|
A:ARG590
|
3.3
|
27.9
|
1.0
|
NH2
|
A:ARG590
|
3.4
|
28.6
|
1.0
|
CG1
|
A:VAL683
|
3.4
|
28.2
|
1.0
|
C21
|
A:882877
|
3.6
|
34.5
|
1.0
|
CD
|
A:ARG590
|
3.6
|
27.1
|
1.0
|
C18
|
A:882877
|
3.6
|
34.8
|
1.0
|
CB
|
A:VAL683
|
3.9
|
28.1
|
1.0
|
C27
|
A:882877
|
4.1
|
33.8
|
1.0
|
NH1
|
A:ARG590
|
4.1
|
28.3
|
1.0
|
CG
|
A:ARG590
|
4.2
|
26.9
|
1.0
|
C
|
A:VAL683
|
4.2
|
27.2
|
1.0
|
CB
|
A:SER661
|
4.3
|
33.2
|
1.0
|
O
|
A:HOH979
|
4.3
|
36.9
|
1.0
|
N
|
A:SER684
|
4.3
|
26.3
|
1.0
|
O
|
A:VAL683
|
4.3
|
27.4
|
1.0
|
CB
|
A:SER684
|
4.5
|
26.1
|
1.0
|
O
|
A:HOH912
|
4.7
|
39.2
|
1.0
|
CA
|
A:VAL683
|
4.7
|
27.9
|
1.0
|
CA
|
A:SER684
|
4.9
|
25.8
|
1.0
|
CD2
|
B:LEU857
|
4.9
|
34.5
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 4 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F877
b:31.1
occ:1.00
|
F2
|
A:882877
|
0.0
|
31.1
|
1.0
|
C28
|
A:882877
|
1.3
|
31.6
|
1.0
|
C19
|
A:882877
|
2.4
|
31.1
|
1.0
|
C22
|
A:882877
|
2.4
|
31.0
|
1.0
|
O
|
B:GLY860
|
3.2
|
52.8
|
1.0
|
O
|
B:ALA856
|
3.2
|
33.5
|
1.0
|
C
|
B:GLY860
|
3.5
|
52.6
|
1.0
|
C16
|
A:882877
|
3.6
|
31.6
|
1.0
|
C25
|
A:882877
|
3.7
|
30.6
|
1.0
|
C
|
B:HIS861
|
3.8
|
55.8
|
1.0
|
C
|
B:ALA856
|
4.0
|
33.4
|
1.0
|
N
|
B:HIS861
|
4.0
|
54.3
|
1.0
|
CA
|
B:GLY860
|
4.1
|
51.2
|
1.0
|
C31
|
A:882877
|
4.1
|
31.0
|
1.0
|
N
|
B:GLY860
|
4.4
|
49.7
|
1.0
|
CA
|
B:HIS861
|
4.5
|
55.5
|
1.0
|
CB
|
B:ALA856
|
4.5
|
32.5
|
1.0
|
CA
|
B:ALA856
|
4.6
|
32.6
|
1.0
|
O
|
B:HIS861
|
4.7
|
55.9
|
1.0
|
N
|
B:LEU857
|
4.8
|
34.5
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 5 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F876
b:34.8
occ:1.00
|
F1
|
C:882876
|
0.0
|
34.8
|
1.0
|
C30
|
C:882876
|
1.3
|
35.0
|
1.0
|
C24
|
C:882876
|
2.4
|
34.6
|
1.0
|
C15
|
C:882876
|
2.4
|
34.6
|
1.0
|
NE
|
C:ARG590
|
2.8
|
31.2
|
1.0
|
CZ
|
C:ARG590
|
2.9
|
31.4
|
1.0
|
NH2
|
C:ARG590
|
3.1
|
31.2
|
1.0
|
CG1
|
C:VAL683
|
3.4
|
30.3
|
1.0
|
CD
|
C:ARG590
|
3.4
|
30.3
|
1.0
|
NH1
|
C:ARG590
|
3.5
|
32.1
|
1.0
|
OG
|
C:SER661
|
3.6
|
42.5
|
1.0
|
C21
|
C:882876
|
3.6
|
35.0
|
1.0
|
C18
|
C:882876
|
3.7
|
35.2
|
1.0
|
CG2
|
C:VAL683
|
3.7
|
30.6
|
1.0
|
CB
|
C:VAL683
|
4.1
|
30.2
|
1.0
|
C27
|
C:882876
|
4.1
|
34.8
|
1.0
|
CB
|
C:SER684
|
4.2
|
28.3
|
1.0
|
CG
|
C:ARG590
|
4.2
|
30.2
|
1.0
|
C
|
C:VAL683
|
4.3
|
29.5
|
1.0
|
O
|
C:VAL683
|
4.3
|
28.8
|
1.0
|
N
|
C:SER684
|
4.3
|
28.9
|
1.0
|
CB
|
C:SER661
|
4.7
|
40.9
|
1.0
|
CA
|
C:SER684
|
4.8
|
28.1
|
1.0
|
CA
|
C:VAL683
|
4.9
|
30.0
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 6 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F876
b:38.1
occ:1.00
|
F2
|
C:882876
|
0.0
|
38.1
|
1.0
|
C28
|
C:882876
|
1.3
|
37.7
|
1.0
|
C22
|
C:882876
|
2.4
|
37.1
|
1.0
|
C19
|
C:882876
|
2.4
|
38.1
|
1.0
|
O
|
D:ALA856
|
3.2
|
32.3
|
1.0
|
C25
|
C:882876
|
3.6
|
36.5
|
1.0
|
C16
|
C:882876
|
3.6
|
37.7
|
1.0
|
O
|
D:ALA859
|
3.9
|
40.4
|
1.0
|
C
|
D:ALA856
|
4.0
|
32.3
|
1.0
|
C31
|
C:882876
|
4.1
|
36.8
|
1.0
|
CB
|
D:ALA856
|
4.5
|
31.8
|
1.0
|
CA
|
D:ALA856
|
4.6
|
31.7
|
1.0
|
N
|
D:LEU857
|
4.9
|
32.9
|
1.0
|
C
|
D:ALA859
|
5.0
|
39.8
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 7 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F876
b:30.2
occ:1.00
|
F1
|
D:882876
|
0.0
|
30.2
|
1.0
|
C30
|
D:882876
|
1.3
|
27.2
|
1.0
|
C24
|
D:882876
|
2.3
|
26.9
|
1.0
|
C15
|
D:882876
|
2.4
|
26.9
|
1.0
|
NE
|
D:ARG590
|
3.0
|
26.1
|
1.0
|
CZ
|
D:ARG590
|
3.3
|
27.0
|
1.0
|
CG1
|
D:VAL683
|
3.3
|
25.7
|
1.0
|
OG
|
D:SER661
|
3.4
|
39.5
|
1.0
|
NH2
|
D:ARG590
|
3.6
|
29.9
|
1.0
|
CD
|
D:ARG590
|
3.6
|
26.7
|
1.0
|
C21
|
D:882876
|
3.6
|
26.3
|
1.0
|
C18
|
D:882876
|
3.7
|
27.1
|
1.0
|
CG2
|
D:VAL683
|
3.7
|
26.8
|
1.0
|
NH1
|
D:ARG590
|
3.9
|
25.3
|
1.0
|
CB
|
D:VAL683
|
4.1
|
25.2
|
1.0
|
CB
|
D:SER684
|
4.1
|
22.3
|
1.0
|
C27
|
D:882876
|
4.1
|
26.4
|
1.0
|
C
|
D:VAL683
|
4.1
|
24.1
|
1.0
|
N
|
D:SER684
|
4.2
|
23.0
|
1.0
|
O
|
D:VAL683
|
4.2
|
24.1
|
1.0
|
CG
|
D:ARG590
|
4.3
|
26.1
|
1.0
|
CE
|
D:MET657
|
4.3
|
45.3
|
1.0
|
CB
|
D:SER661
|
4.6
|
38.8
|
1.0
|
CA
|
D:SER684
|
4.7
|
22.1
|
1.0
|
CA
|
D:VAL683
|
4.8
|
24.8
|
1.0
|
CD2
|
C:LEU857
|
4.9
|
28.4
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 2q1l
Go back to
Fluorine Binding Sites List in 2q1l
Fluorine binding site 8 out
of 8 in the Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Design and Synthesis of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F876
b:31.1
occ:1.00
|
F2
|
D:882876
|
0.0
|
31.1
|
1.0
|
C28
|
D:882876
|
1.3
|
29.7
|
1.0
|
C22
|
D:882876
|
2.3
|
29.7
|
1.0
|
C19
|
D:882876
|
2.4
|
29.5
|
1.0
|
C
|
C:GLY860
|
3.2
|
44.1
|
1.0
|
O
|
C:ALA856
|
3.4
|
27.0
|
1.0
|
O
|
C:GLY860
|
3.6
|
45.1
|
1.0
|
C25
|
D:882876
|
3.6
|
28.2
|
1.0
|
C16
|
D:882876
|
3.6
|
29.1
|
1.0
|
CA
|
C:GLY860
|
3.8
|
43.6
|
1.0
|
C31
|
D:882876
|
4.1
|
27.7
|
1.0
|
C
|
C:ALA856
|
4.1
|
27.3
|
1.0
|
N
|
C:GLY860
|
4.2
|
43.0
|
1.0
|
CB
|
C:ALA856
|
4.6
|
26.6
|
1.0
|
CA
|
C:ALA856
|
4.7
|
26.6
|
1.0
|
N
|
C:LEU857
|
4.9
|
28.7
|
1.0
|
|
Reference:
J.A.Pfefferkorn,
Y.Song,
K.L.Sun,
S.R.Miller,
B.K.Trivedi,
C.Choi,
R.J.Sorenson,
L.D.Bratton,
P.C.Unangst,
S.D.Larsen,
T.J.Poel,
X.M.Cheng,
C.Lee,
N.Erasga,
B.Auerbach,
V.Askew,
L.Dillon,
J.C.Hanselman,
Z.Lin,
G.Lu,
A.Robertson,
K.Olsen,
T.Mertz,
C.Sekerke,
A.Pavlovsky,
M.S.Harris,
G.Bainbridge,
N.Caspers,
H.Chen,
M.Eberstadt.
Design and Synthesis of Hepatoselective, Pyrrole-Based Hmg-Coa Reductase Inhibitors. Bioorg.Med.Chem.Lett. V. 17 4538 2007.
ISSN: ISSN 0960-894X
PubMed: 17574412
DOI: 10.1016/J.BMCL.2007.05.096
Page generated: Wed Jul 31 15:40:00 2024
|