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Fluorine in PDB 2q94: E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04

Enzymatic activity of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04

All present enzymatic activity of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04:
3.4.11.18;

Protein crystallography data

The structure of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04, PDB code: 2q94 was solved by Q.-Z.Ye, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.91 / 1.63
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.199, 60.605, 50.624, 90.00, 104.80, 90.00
R / Rfree (%) 21.3 / 23.8

Other elements in 2q94:

The structure of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04 also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04 (pdb code 2q94). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04, PDB code: 2q94:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2q94

Go back to Fluorine Binding Sites List in 2q94
Fluorine binding site 1 out of 3 in the E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F400

b:20.2
occ:1.00
FAN A:A04400 0.0 20.2 1.0
CAL A:A04400 1.3 20.3 1.0
FAO A:A04400 2.2 20.1 1.0
FAM A:A04400 2.2 19.3 1.0
OAS A:A04400 2.3 18.0 1.0
CAJ A:A04400 2.8 18.5 1.0
CAC A:A04400 3.1 18.1 1.0
CAG A:A04400 3.2 19.7 1.0
CAE A:A04400 3.2 17.7 1.0
CE2 A:PHE177 3.4 15.2 1.0
SG A:CYS59 3.7 20.2 1.0
CAI A:A04400 3.7 21.4 1.0
CZ A:PHE177 3.8 14.6 1.0
CD2 A:TYR62 3.9 22.5 1.0
OAP A:A04400 3.9 14.7 1.0
CB A:CYS59 4.0 19.7 1.0
CA A:CYS59 4.0 19.5 1.0
CAD A:A04400 4.0 17.3 1.0
CAK A:A04400 4.3 21.8 1.0
CAA A:A04400 4.4 16.9 1.0
CB A:TYR62 4.4 24.6 1.0
O A:HOH509 4.4 12.7 1.0
CG A:TYR62 4.5 22.8 1.0
CD2 A:PHE177 4.5 14.7 1.0
CE2 A:TYR62 4.6 24.0 1.0
O A:CYS59 4.7 20.3 1.0
CAF A:A04400 4.7 22.4 1.0
O A:HOH508 4.8 12.9 1.0
SG A:CYS70 4.8 13.7 1.0
C A:CYS59 4.8 21.1 1.0
N A:CYS59 4.9 17.6 1.0
CAH A:A04400 5.0 23.9 1.0

Fluorine binding site 2 out of 3 in 2q94

Go back to Fluorine Binding Sites List in 2q94
Fluorine binding site 2 out of 3 in the E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F400

b:20.1
occ:1.00
FAO A:A04400 0.0 20.1 1.0
CAL A:A04400 1.3 20.3 1.0
FAN A:A04400 2.2 20.2 1.0
FAM A:A04400 2.2 19.3 1.0
OAS A:A04400 2.3 18.0 1.0
CAJ A:A04400 2.8 18.5 1.0
CAI A:A04400 3.0 21.4 1.0
CB A:TYR65 3.2 20.3 1.0
CG A:TYR65 3.4 21.3 1.0
CB A:TYR62 3.5 24.6 1.0
O A:CYS59 3.5 20.3 1.0
O A:TYR62 3.5 22.8 1.0
CD2 A:TYR62 3.6 22.5 1.0
CAG A:A04400 3.9 19.7 1.0
CD2 A:TYR65 3.9 21.2 1.0
CG A:TYR62 4.0 22.8 1.0
CA A:CYS59 4.0 19.5 1.0
CD1 A:TYR65 4.1 20.3 1.0
C A:CYS59 4.2 21.1 1.0
CAF A:A04400 4.2 22.4 1.0
CB A:CYS59 4.3 19.7 1.0
C A:TYR62 4.3 26.0 1.0
CA A:TYR62 4.4 25.5 1.0
CAC A:A04400 4.5 18.1 1.0
CA A:TYR65 4.6 21.5 1.0
N A:TYR62 4.7 27.5 1.0
CAE A:A04400 4.7 17.7 1.0
CE2 A:TYR62 4.7 24.0 1.0
CE2 A:TYR65 4.8 20.8 1.0
CAK A:A04400 4.9 21.8 1.0
SG A:CYS59 4.9 20.2 1.0
N A:TYR65 4.9 22.9 1.0
CE1 A:TYR65 5.0 20.7 1.0
CE2 A:PHE177 5.0 15.2 1.0

Fluorine binding site 3 out of 3 in 2q94

Go back to Fluorine Binding Sites List in 2q94
Fluorine binding site 3 out of 3 in the E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of E. Coli Methionine Aminopeptidase Mn-Form with Inhibitor A04 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F400

b:19.3
occ:1.00
FAM A:A04400 0.0 19.3 1.0
CAL A:A04400 1.3 20.3 1.0
FAN A:A04400 2.2 20.2 1.0
FAO A:A04400 2.2 20.1 1.0
OAS A:A04400 2.2 18.0 1.0
SG A:CYS70 3.3 13.7 1.0
CB A:CYS59 3.4 19.7 1.0
CD2 A:TYR65 3.4 21.2 1.0
CG A:TYR65 3.5 21.3 1.0
CAJ A:A04400 3.5 18.5 1.0
SG A:CYS59 3.6 20.2 1.0
CE2 A:TYR65 3.7 20.8 1.0
CD1 A:TYR65 3.9 20.3 1.0
CAE A:A04400 3.9 17.7 1.0
CA A:CYS59 3.9 19.5 1.0
O A:HOH509 4.0 12.7 1.0
CB A:TYR65 4.0 20.3 1.0
CZ A:TYR65 4.1 21.0 1.0
CE1 A:TYR65 4.1 20.7 1.0
O A:CYS59 4.2 20.3 1.0
CAI A:A04400 4.3 21.4 1.0
CAC A:A04400 4.3 18.1 1.0
CAG A:A04400 4.4 19.7 1.0
C A:CYS59 4.4 21.1 1.0
CAD A:A04400 4.8 17.3 1.0
OH A:TYR65 4.9 21.5 1.0
CB A:CYS70 5.0 11.2 1.0

Reference:

Z.Q.Ma, S.X.Xie, Q.Q.Huang, F.J.Nan, T.D.Hurley, Q.Z.Ye. Structural Analysis of Inhibition of E. Coli Methionine Aminopeptidase: Implication of Loop Flexibility in Selective Inhibition of Bacterial Enzymes. Bmc Struct.Biol. V. 7 84 2007.
ISSN: ESSN 1472-6807
PubMed: 18093325
DOI: 10.1186/1472-6807-7-84
Page generated: Sun Dec 13 11:39:22 2020

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