Atomistry » Fluorine » PDB 2weg-2x2f » 2wf5
Atomistry »
  Fluorine »
    PDB 2weg-2x2f »
      2wf5 »

Fluorine in PDB 2wf5: Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate

Enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate

All present enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate, PDB code: 2wf5 was solved by M.W.Bowler, N.J.Baxter, C.E.Webster, A.M.Hounslow, M.J.Cliff, N.H.Williams, F.Hollfelder, S.Gamblin, G.M.Blackburn, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.647, 54.659, 105.120, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 19.2

Other elements in 2wf5:

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate (pdb code 2wf5). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate, PDB code: 2wf5:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2wf5

Go back to Fluorine Binding Sites List in 2wf5
Fluorine binding site 1 out of 3 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2832

b:8.5
occ:1.00
F1 A:MGF2832 0.0 8.5 1.0
MG A:MGF2832 1.9 10.3 1.0
MG A:MG2833 1.9 8.1 1.0
O2 A:BG61831 2.7 9.5 1.0
O A:HOH2170 2.7 8.7 1.0
OD2 A:ASP8 2.9 7.7 1.0
O1 A:BG61831 2.9 9.5 1.0
OD1 A:ASP8 2.9 8.0 1.0
O A:HOH2172 3.0 8.1 1.0
O A:ASP10 3.0 7.3 1.0
F2 A:MGF2832 3.0 9.4 1.0
F3 A:MGF2832 3.2 12.5 1.0
CG A:ASP8 3.3 6.9 1.0
CB A:ASP10 3.3 6.9 1.0
N A:ASP10 3.6 7.3 1.0
C2 A:BG61831 3.6 8.9 1.0
C1 A:BG61831 3.6 9.1 1.0
CA A:ASP10 3.7 6.9 1.0
C A:ASP10 3.7 7.0 1.0
OD2 A:ASP10 3.9 9.0 1.0
OD1 A:ASP170 4.0 7.5 1.0
CG A:ASP10 4.0 8.2 1.0
O A:HOH2200 4.3 9.4 1.0
N A:GLY46 4.4 9.4 1.0
CA A:GLY46 4.4 10.2 1.0
C A:LEU9 4.6 6.8 1.0
N A:LEU9 4.7 6.5 1.0
CB A:ASP8 4.8 6.7 1.0
O5 A:BG61831 4.9 9.9 1.0
CG A:ASP170 5.0 8.5 1.0
C3 A:BG61831 5.0 9.7 1.0
NZ A:LYS145 5.0 9.9 1.0

Fluorine binding site 2 out of 3 in 2wf5

Go back to Fluorine Binding Sites List in 2wf5
Fluorine binding site 2 out of 3 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2832

b:9.4
occ:1.00
F2 A:MGF2832 0.0 9.4 1.0
MG A:MGF2832 1.8 10.3 1.0
OG A:SER114 2.6 10.1 1.0
OD1 A:ASP8 2.8 8.0 1.0
O1 A:BG61831 2.8 9.5 1.0
N A:ASP10 2.8 7.3 1.0
N A:LEU9 2.9 6.5 1.0
F1 A:MGF2832 3.0 8.5 1.0
CB A:SER114 3.2 10.6 1.0
F3 A:MGF2832 3.3 12.5 1.0
CB A:LEU9 3.3 7.1 1.0
CA A:LEU9 3.3 6.5 1.0
OD2 A:ASP10 3.4 9.0 1.0
C A:LEU9 3.5 6.8 1.0
CG A:ASP8 3.6 6.9 1.0
CA A:SER114 3.6 10.7 1.0
CG A:ASP10 3.6 8.2 1.0
CB A:ASP10 3.8 6.9 1.0
CA A:ASP10 3.9 6.9 1.0
OD2 A:ASP8 4.0 7.7 1.0
C A:ASP8 4.1 6.6 1.0
C1 A:BG61831 4.2 9.1 1.0
N A:ALA115 4.3 11.9 1.0
OD1 A:ASP10 4.3 8.8 1.0
CA A:ASP8 4.5 6.6 1.0
C A:SER114 4.5 11.5 1.0
MG A:MG2833 4.5 8.1 1.0
O A:ASP10 4.6 7.3 1.0
CB A:ASP8 4.6 6.7 1.0
CG A:LEU9 4.7 7.6 1.0
O A:LEU9 4.7 6.9 1.0
C A:ASP10 4.8 7.0 1.0
CB A:SER116 4.8 9.8 1.0
N A:SER116 4.8 10.5 1.0
N A:SER114 4.8 10.5 1.0
O2 A:BG61831 4.9 9.5 1.0
O5 A:BG61831 4.9 9.9 1.0
C2 A:BG61831 4.9 8.9 1.0
NZ A:LYS145 5.0 9.9 1.0

Fluorine binding site 3 out of 3 in 2wf5

Go back to Fluorine Binding Sites List in 2wf5
Fluorine binding site 3 out of 3 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose-6- Phosphate and Trifluoromagnesate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2832

b:12.5
occ:1.00
F3 A:MGF2832 0.0 12.5 1.0
MG A:MGF2832 1.8 10.3 1.0
NZ A:LYS145 2.6 9.9 1.0
OD1 A:ASP8 2.7 8.0 1.0
N A:ALA115 2.8 11.9 1.0
O1 A:BG61831 2.8 9.5 1.0
F1 A:MGF2832 3.2 8.5 1.0
F2 A:MGF2832 3.3 9.4 1.0
C1 A:BG61831 3.3 9.1 1.0
CB A:ALA115 3.4 13.5 1.0
CE A:LYS145 3.5 9.6 1.0
CA A:SER114 3.7 10.7 1.0
C A:SER114 3.7 11.5 1.0
CA A:ALA115 3.7 12.1 1.0
CG A:ASP8 3.9 6.9 1.0
O A:HOH2170 3.9 8.7 1.0
CD A:LYS145 4.0 10.3 1.0
OG A:SER114 4.1 10.1 1.0
CA A:GLY46 4.1 10.2 1.0
O2 A:BG61831 4.1 9.5 1.0
O A:GLY46 4.2 11.2 1.0
O5 A:BG61831 4.3 9.9 1.0
C2 A:BG61831 4.4 8.9 1.0
O A:ALA113 4.4 10.5 1.0
CB A:SER114 4.4 10.6 1.0
OE2 A:GLU169 4.5 12.6 1.0
OD2 A:ASP8 4.5 7.7 1.0
C A:GLY46 4.6 10.7 1.0
C A:ALA115 4.6 11.4 1.0
N A:SER116 4.6 10.5 1.0
MG A:MG2833 4.6 8.1 1.0
N A:SER114 4.8 10.5 1.0
O A:SER114 4.9 13.1 1.0

Reference:

N.J.Baxter, M.W.Bowler, T.Alizadeh, M.J.Cliff, A.M.Hounslow, B.Wu, D.B.Berkowitz, N.H.Williams, G.M.Blackburn, J.P.Waltho. Atomic Details of Near-Transition State Conformers For Enzyme Phosphoryl Transfer Revealed By Mgf-3 Rather Than By Phosphoranes. Proc. Natl. Acad. Sci. V. 107 4555 2010U.S.A..
ISSN: ESSN 1091-6490
PubMed: 20164409
DOI: 10.1073/PNAS.0910333106
Page generated: Wed Jul 31 16:25:07 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy