Fluorine in PDB 2x2e: Dynamin Gtpase Dimer, Long Axis Form
Enzymatic activity of Dynamin Gtpase Dimer, Long Axis Form
All present enzymatic activity of Dynamin Gtpase Dimer, Long Axis Form:
3.6.5.5;
Protein crystallography data
The structure of Dynamin Gtpase Dimer, Long Axis Form, PDB code: 2x2e
was solved by
J.S.Chappie,
S.Acharya,
M.Leonard,
S.L.Schmid,
F.Dyda,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
2.00
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.610,
81.020,
181.540,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.5 /
23
|
Other elements in 2x2e:
The structure of Dynamin Gtpase Dimer, Long Axis Form also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Dynamin Gtpase Dimer, Long Axis Form
(pdb code 2x2e). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Dynamin Gtpase Dimer, Long Axis Form, PDB code: 2x2e:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 1 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1745
b:15.4
occ:1.00
|
F1
|
A:ALF1745
|
0.0
|
15.4
|
1.0
|
|
AL
|
A:ALF1745
|
1.8
|
15.0
|
1.0
|
|
F3
|
A:ALF1745
|
2.5
|
15.6
|
1.0
|
|
F4
|
A:ALF1745
|
2.5
|
15.3
|
1.0
|
|
N
|
A:VAL64
|
2.7
|
5.3
|
1.0
|
|
NA
|
A:NA1747
|
2.7
|
8.6
|
1.0
|
|
O
|
A:HOH2071
|
2.7
|
15.1
|
1.0
|
|
O3B
|
A:GDP1744
|
2.8
|
4.0
|
1.0
|
|
N
|
A:THR65
|
2.9
|
4.2
|
1.0
|
|
CB
|
A:VAL64
|
3.1
|
4.2
|
1.0
|
|
O
|
A:HOH2331
|
3.1
|
5.6
|
1.0
|
|
CA
|
A:VAL64
|
3.2
|
3.7
|
1.0
|
|
C
|
A:VAL64
|
3.5
|
4.1
|
1.0
|
|
F2
|
A:ALF1745
|
3.6
|
15.0
|
1.0
|
|
MG
|
A:MG1746
|
3.7
|
5.7
|
1.0
|
|
O
|
A:GLY62
|
3.8
|
10.6
|
1.0
|
|
C
|
A:ILE63
|
3.8
|
9.2
|
1.0
|
|
CG2
|
A:VAL64
|
3.8
|
4.5
|
1.0
|
|
PB
|
A:GDP1744
|
4.0
|
4.0
|
1.0
|
|
OG1
|
A:THR65
|
4.0
|
3.2
|
1.0
|
|
CA
|
A:THR65
|
4.1
|
1.7
|
1.0
|
|
O
|
A:GLY60
|
4.1
|
7.5
|
1.0
|
|
CB
|
A:THR65
|
4.2
|
1.0
|
1.0
|
|
CA
|
A:ILE63
|
4.2
|
8.6
|
1.0
|
|
O1B
|
A:GDP1744
|
4.3
|
3.8
|
1.0
|
|
O2A
|
A:GDP1744
|
4.3
|
5.9
|
1.0
|
|
CG1
|
A:VAL64
|
4.3
|
4.5
|
1.0
|
|
O
|
A:THR65
|
4.4
|
6.1
|
1.0
|
|
O
|
A:VAL64
|
4.7
|
5.5
|
1.0
|
|
C
|
A:THR65
|
4.7
|
3.0
|
1.0
|
|
OG
|
A:SER41
|
4.7
|
4.7
|
1.0
|
|
C
|
A:GLY62
|
4.8
|
10.1
|
1.0
|
|
O
|
A:ILE63
|
4.9
|
11.6
|
1.0
|
|
O2B
|
A:GDP1744
|
4.9
|
4.0
|
1.0
|
|
O3A
|
A:GDP1744
|
5.0
|
4.7
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 2 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1745
b:15.0
occ:1.00
|
F2
|
A:ALF1745
|
0.0
|
15.0
|
1.0
|
|
AL
|
A:ALF1745
|
1.8
|
15.0
|
1.0
|
|
F3
|
A:ALF1745
|
2.5
|
15.6
|
1.0
|
|
NZ
|
A:LYS44
|
2.6
|
2.7
|
1.0
|
|
F4
|
A:ALF1745
|
2.6
|
15.3
|
1.0
|
|
O3B
|
A:GDP1744
|
2.7
|
4.0
|
1.0
|
|
O
|
A:HOH2071
|
2.7
|
15.1
|
1.0
|
|
N
|
A:GLY139
|
2.9
|
4.4
|
1.0
|
|
O2B
|
A:GDP1744
|
3.1
|
4.0
|
1.0
|
|
CA
|
A:GLY139
|
3.3
|
5.3
|
1.0
|
|
N
|
A:SER41
|
3.4
|
5.0
|
1.0
|
|
PB
|
A:GDP1744
|
3.4
|
4.0
|
1.0
|
|
CE
|
A:LYS44
|
3.5
|
2.9
|
1.0
|
|
F1
|
A:ALF1745
|
3.6
|
15.4
|
1.0
|
|
CA
|
A:GLN40
|
3.7
|
3.4
|
1.0
|
|
O
|
A:HOH2141
|
3.7
|
7.1
|
1.0
|
|
C
|
A:PRO138
|
3.9
|
5.9
|
1.0
|
|
O1B
|
A:GDP1744
|
4.0
|
3.8
|
1.0
|
|
C
|
A:GLN40
|
4.0
|
3.9
|
1.0
|
|
O
|
A:HOH2139
|
4.1
|
6.0
|
1.0
|
|
O
|
A:GLY39
|
4.1
|
3.4
|
1.0
|
|
MG
|
A:MG1746
|
4.2
|
5.7
|
1.0
|
|
CA
|
A:PRO138
|
4.3
|
5.2
|
1.0
|
|
CA
|
A:SER41
|
4.3
|
6.3
|
1.0
|
|
CG
|
A:GLN40
|
4.4
|
2.7
|
1.0
|
|
C
|
A:GLY139
|
4.5
|
5.9
|
1.0
|
|
O
|
A:LEU137
|
4.5
|
7.2
|
1.0
|
|
CB
|
A:GLN40
|
4.5
|
3.1
|
1.0
|
|
N
|
A:GLN40
|
4.6
|
3.8
|
1.0
|
|
NA
|
A:NA1747
|
4.6
|
8.6
|
1.0
|
|
C
|
A:GLY39
|
4.7
|
4.0
|
1.0
|
|
O
|
A:GLY139
|
4.7
|
4.7
|
1.0
|
|
O3A
|
A:GDP1744
|
4.8
|
4.7
|
1.0
|
|
CD
|
A:LYS44
|
4.9
|
1.0
|
1.0
|
|
O
|
A:PRO138
|
5.0
|
8.1
|
1.0
|
|
N
|
A:ALA42
|
5.0
|
7.6
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 3 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1745
b:15.6
occ:1.00
|
F3
|
A:ALF1745
|
0.0
|
15.6
|
1.0
|
|
AL
|
A:ALF1745
|
1.8
|
15.0
|
1.0
|
|
NA
|
A:NA1747
|
2.5
|
8.6
|
1.0
|
|
F1
|
A:ALF1745
|
2.5
|
15.4
|
1.0
|
|
F2
|
A:ALF1745
|
2.5
|
15.0
|
1.0
|
|
O3B
|
A:GDP1744
|
2.7
|
4.0
|
1.0
|
|
O
|
A:HOH2071
|
2.7
|
15.1
|
1.0
|
|
N
|
A:SER41
|
2.9
|
5.0
|
1.0
|
|
CG
|
A:GLN40
|
2.9
|
2.7
|
1.0
|
|
O
|
A:GLY62
|
3.2
|
10.6
|
1.0
|
|
OG
|
A:SER41
|
3.3
|
4.7
|
1.0
|
|
F4
|
A:ALF1745
|
3.6
|
15.3
|
1.0
|
|
CA
|
A:SER41
|
3.6
|
6.3
|
1.0
|
|
O
|
A:HOH2141
|
3.7
|
7.1
|
1.0
|
|
C
|
A:GLN40
|
3.8
|
3.9
|
1.0
|
|
CA
|
A:GLN40
|
3.8
|
3.4
|
1.0
|
|
CD
|
A:GLN40
|
3.9
|
6.4
|
1.0
|
|
CB
|
A:GLN40
|
3.9
|
3.1
|
1.0
|
|
CB
|
A:SER41
|
4.0
|
4.5
|
1.0
|
|
CA
|
A:ILE63
|
4.0
|
8.6
|
1.0
|
|
N
|
A:VAL64
|
4.1
|
5.3
|
1.0
|
|
PB
|
A:GDP1744
|
4.1
|
4.0
|
1.0
|
|
C
|
A:GLY62
|
4.2
|
10.1
|
1.0
|
|
O2B
|
A:GDP1744
|
4.3
|
4.0
|
1.0
|
|
OE1
|
A:GLN40
|
4.4
|
2.1
|
1.0
|
|
C
|
A:ILE63
|
4.6
|
9.2
|
1.0
|
|
N
|
A:ILE63
|
4.6
|
8.3
|
1.0
|
|
NE2
|
A:GLN40
|
4.6
|
11.4
|
1.0
|
|
O
|
A:GLY60
|
4.7
|
7.5
|
1.0
|
|
N
|
A:GLY139
|
4.8
|
4.4
|
1.0
|
|
OD2
|
D:ASP180
|
4.8
|
13.5
|
1.0
|
|
NZ
|
A:LYS44
|
4.8
|
2.7
|
1.0
|
|
O
|
A:GLN40
|
4.9
|
4.8
|
1.0
|
|
CB
|
A:ILE63
|
4.9
|
8.5
|
1.0
|
|
CG1
|
A:ILE63
|
5.0
|
7.5
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 4 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1745
b:15.3
occ:1.00
|
F4
|
A:ALF1745
|
0.0
|
15.3
|
1.0
|
|
AL
|
A:ALF1745
|
1.8
|
15.0
|
1.0
|
|
MG
|
A:MG1746
|
1.9
|
5.7
|
1.0
|
|
F1
|
A:ALF1745
|
2.5
|
15.4
|
1.0
|
|
O
|
A:HOH2139
|
2.6
|
6.0
|
1.0
|
|
F2
|
A:ALF1745
|
2.6
|
15.0
|
1.0
|
|
O3B
|
A:GDP1744
|
2.7
|
4.0
|
1.0
|
|
OG1
|
A:THR65
|
2.7
|
3.2
|
1.0
|
|
O
|
A:HOH2071
|
2.8
|
15.1
|
1.0
|
|
O1B
|
A:GDP1744
|
2.9
|
3.8
|
1.0
|
|
CB
|
A:THR65
|
2.9
|
1.0
|
1.0
|
|
O
|
A:HOH2331
|
3.0
|
5.6
|
1.0
|
|
PB
|
A:GDP1744
|
3.1
|
4.0
|
1.0
|
|
N
|
A:THR65
|
3.5
|
4.2
|
1.0
|
|
F3
|
A:ALF1745
|
3.6
|
15.6
|
1.0
|
|
CA
|
A:THR65
|
3.7
|
1.7
|
1.0
|
|
OG
|
A:SER45
|
3.8
|
3.1
|
1.0
|
|
O2B
|
A:GDP1744
|
3.8
|
4.0
|
1.0
|
|
O
|
A:LEU137
|
4.1
|
7.2
|
1.0
|
|
CG2
|
A:THR65
|
4.2
|
2.8
|
1.0
|
|
O
|
A:THR65
|
4.2
|
6.1
|
1.0
|
|
NZ
|
A:LYS44
|
4.3
|
2.7
|
1.0
|
|
CA
|
A:PRO138
|
4.4
|
5.2
|
1.0
|
|
N
|
A:GLY139
|
4.4
|
4.4
|
1.0
|
|
C
|
A:THR65
|
4.5
|
3.0
|
1.0
|
|
CE
|
A:LYS44
|
4.6
|
2.9
|
1.0
|
|
O3A
|
A:GDP1744
|
4.6
|
4.7
|
1.0
|
|
NA
|
A:NA1747
|
4.7
|
8.6
|
1.0
|
|
C
|
A:VAL64
|
4.7
|
4.1
|
1.0
|
|
O2A
|
A:GDP1744
|
4.8
|
5.9
|
1.0
|
|
N
|
A:VAL64
|
4.9
|
5.3
|
1.0
|
|
C
|
A:PRO138
|
4.9
|
5.9
|
1.0
|
|
C
|
A:LEU137
|
4.9
|
5.7
|
1.0
|
|
CB
|
A:SER45
|
4.9
|
3.4
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 5 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1745
b:12.8
occ:1.00
|
F1
|
D:ALF1745
|
0.0
|
12.8
|
1.0
|
|
AL
|
D:ALF1745
|
1.8
|
12.2
|
1.0
|
|
F3
|
D:ALF1745
|
2.5
|
13.1
|
1.0
|
|
F4
|
D:ALF1745
|
2.6
|
12.8
|
1.0
|
|
NA
|
D:NA1747
|
2.7
|
9.2
|
1.0
|
|
O
|
D:HOH2051
|
2.7
|
12.3
|
1.0
|
|
N
|
D:VAL64
|
2.8
|
7.0
|
1.0
|
|
O3B
|
D:GDP1744
|
2.8
|
6.7
|
1.0
|
|
N
|
D:THR65
|
3.0
|
5.2
|
1.0
|
|
CB
|
D:VAL64
|
3.1
|
5.3
|
1.0
|
|
O
|
D:HOH2287
|
3.1
|
4.4
|
1.0
|
|
CA
|
D:VAL64
|
3.3
|
5.9
|
1.0
|
|
C
|
D:VAL64
|
3.6
|
6.6
|
1.0
|
|
F2
|
D:ALF1745
|
3.6
|
12.0
|
1.0
|
|
MG
|
D:MG1746
|
3.7
|
4.7
|
1.0
|
|
O
|
D:GLY62
|
3.7
|
6.2
|
1.0
|
|
CG2
|
D:VAL64
|
3.7
|
5.7
|
1.0
|
|
C
|
D:ILE63
|
3.9
|
6.5
|
1.0
|
|
OG1
|
D:THR65
|
4.0
|
4.0
|
1.0
|
|
PB
|
D:GDP1744
|
4.0
|
6.5
|
1.0
|
|
O
|
D:GLY60
|
4.1
|
7.8
|
1.0
|
|
CA
|
D:THR65
|
4.1
|
7.2
|
1.0
|
|
CA
|
D:ILE63
|
4.2
|
6.1
|
1.0
|
|
CB
|
D:THR65
|
4.2
|
2.5
|
1.0
|
|
O1B
|
D:GDP1744
|
4.3
|
7.0
|
1.0
|
|
CG1
|
D:VAL64
|
4.3
|
5.4
|
1.0
|
|
O2A
|
D:GDP1744
|
4.3
|
7.1
|
1.0
|
|
O
|
D:THR65
|
4.4
|
7.0
|
1.0
|
|
OG
|
D:SER41
|
4.7
|
7.2
|
1.0
|
|
C
|
D:GLY62
|
4.8
|
6.5
|
1.0
|
|
C
|
D:THR65
|
4.8
|
8.2
|
1.0
|
|
O
|
D:VAL64
|
4.8
|
8.4
|
1.0
|
|
CG1
|
D:ILE63
|
4.9
|
1.0
|
1.0
|
|
O
|
D:ILE63
|
4.9
|
5.4
|
1.0
|
|
O
|
D:HOH2117
|
4.9
|
10.5
|
1.0
|
|
O2B
|
D:GDP1744
|
5.0
|
6.6
|
1.0
|
|
N
|
D:SER41
|
5.0
|
4.2
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 6 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1745
b:12.0
occ:1.00
|
F2
|
D:ALF1745
|
0.0
|
12.0
|
1.0
|
|
AL
|
D:ALF1745
|
1.8
|
12.2
|
1.0
|
|
F3
|
D:ALF1745
|
2.5
|
13.1
|
1.0
|
|
NZ
|
D:LYS44
|
2.6
|
1.0
|
1.0
|
|
F4
|
D:ALF1745
|
2.6
|
12.8
|
1.0
|
|
O
|
D:HOH2051
|
2.7
|
12.3
|
1.0
|
|
O3B
|
D:GDP1744
|
2.7
|
6.7
|
1.0
|
|
N
|
D:GLY139
|
2.8
|
6.8
|
1.0
|
|
CA
|
D:GLY139
|
3.1
|
5.3
|
1.0
|
|
O2B
|
D:GDP1744
|
3.3
|
6.6
|
1.0
|
|
N
|
D:SER41
|
3.3
|
4.2
|
1.0
|
|
CE
|
D:LYS44
|
3.5
|
1.6
|
1.0
|
|
PB
|
D:GDP1744
|
3.5
|
6.5
|
1.0
|
|
F1
|
D:ALF1745
|
3.6
|
12.8
|
1.0
|
|
O
|
D:HOH2117
|
3.6
|
10.5
|
1.0
|
|
CA
|
D:GLN40
|
3.6
|
3.9
|
1.0
|
|
C
|
D:PRO138
|
3.9
|
7.6
|
1.0
|
|
C
|
D:GLN40
|
4.0
|
5.1
|
1.0
|
|
O
|
D:GLY39
|
4.2
|
4.7
|
1.0
|
|
O1B
|
D:GDP1744
|
4.2
|
7.0
|
1.0
|
|
MG
|
D:MG1746
|
4.3
|
4.7
|
1.0
|
|
CA
|
D:SER41
|
4.3
|
3.3
|
1.0
|
|
O
|
D:HOH2115
|
4.3
|
4.7
|
1.0
|
|
CA
|
D:PRO138
|
4.3
|
7.5
|
1.0
|
|
C
|
D:GLY139
|
4.3
|
6.2
|
1.0
|
|
CG
|
D:GLN40
|
4.3
|
5.7
|
1.0
|
|
CB
|
D:GLN40
|
4.4
|
1.4
|
1.0
|
|
O
|
D:LEU137
|
4.5
|
7.8
|
1.0
|
|
N
|
D:GLN40
|
4.6
|
3.9
|
1.0
|
|
NA
|
D:NA1747
|
4.6
|
9.2
|
1.0
|
|
O
|
D:GLY139
|
4.6
|
6.2
|
1.0
|
|
C
|
D:GLY39
|
4.7
|
2.8
|
1.0
|
|
O
|
D:PRO138
|
4.8
|
6.5
|
1.0
|
|
CD
|
D:LYS44
|
4.9
|
1.0
|
1.0
|
|
O3A
|
D:GDP1744
|
4.9
|
6.2
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 7 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1745
b:13.1
occ:1.00
|
F3
|
D:ALF1745
|
0.0
|
13.1
|
1.0
|
|
AL
|
D:ALF1745
|
1.8
|
12.2
|
1.0
|
|
F1
|
D:ALF1745
|
2.5
|
12.8
|
1.0
|
|
NA
|
D:NA1747
|
2.5
|
9.2
|
1.0
|
|
F2
|
D:ALF1745
|
2.5
|
12.0
|
1.0
|
|
O3B
|
D:GDP1744
|
2.7
|
6.7
|
1.0
|
|
O
|
D:HOH2051
|
2.8
|
12.3
|
1.0
|
|
N
|
D:SER41
|
2.9
|
4.2
|
1.0
|
|
CG
|
D:GLN40
|
3.0
|
5.7
|
1.0
|
|
O
|
D:GLY62
|
3.3
|
6.2
|
1.0
|
|
OG
|
D:SER41
|
3.3
|
7.2
|
1.0
|
|
F4
|
D:ALF1745
|
3.6
|
12.8
|
1.0
|
|
CA
|
D:SER41
|
3.6
|
3.3
|
1.0
|
|
O
|
D:HOH2117
|
3.6
|
10.5
|
1.0
|
|
C
|
D:GLN40
|
3.7
|
5.1
|
1.0
|
|
CA
|
D:GLN40
|
3.8
|
3.9
|
1.0
|
|
CD
|
D:GLN40
|
3.8
|
9.3
|
1.0
|
|
CB
|
D:GLN40
|
3.9
|
1.4
|
1.0
|
|
CB
|
D:SER41
|
4.0
|
3.0
|
1.0
|
|
CA
|
D:ILE63
|
4.1
|
6.1
|
1.0
|
|
PB
|
D:GDP1744
|
4.1
|
6.5
|
1.0
|
|
OE1
|
D:GLN40
|
4.1
|
6.3
|
1.0
|
|
N
|
D:VAL64
|
4.2
|
7.0
|
1.0
|
|
C
|
D:GLY62
|
4.3
|
6.5
|
1.0
|
|
O2B
|
D:GDP1744
|
4.4
|
6.6
|
1.0
|
|
N
|
D:ILE63
|
4.7
|
6.0
|
1.0
|
|
O
|
D:GLY60
|
4.7
|
7.8
|
1.0
|
|
NE2
|
D:GLN40
|
4.7
|
4.7
|
1.0
|
|
C
|
D:ILE63
|
4.7
|
6.5
|
1.0
|
|
OD1
|
A:ASP180
|
4.7
|
15.9
|
1.0
|
|
N
|
D:GLY139
|
4.7
|
6.8
|
1.0
|
|
NZ
|
D:LYS44
|
4.9
|
1.0
|
1.0
|
|
O
|
D:GLN40
|
4.9
|
9.6
|
1.0
|
|
CG1
|
D:ILE63
|
4.9
|
1.0
|
1.0
|
|
CB
|
D:ILE63
|
5.0
|
6.4
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 2x2e
Go back to
Fluorine Binding Sites List in 2x2e
Fluorine binding site 8 out
of 8 in the Dynamin Gtpase Dimer, Long Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Dynamin Gtpase Dimer, Long Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1745
b:12.8
occ:1.00
|
F4
|
D:ALF1745
|
0.0
|
12.8
|
1.0
|
|
AL
|
D:ALF1745
|
1.8
|
12.2
|
1.0
|
|
MG
|
D:MG1746
|
1.9
|
4.7
|
1.0
|
|
F1
|
D:ALF1745
|
2.6
|
12.8
|
1.0
|
|
F2
|
D:ALF1745
|
2.6
|
12.0
|
1.0
|
|
O
|
D:HOH2115
|
2.7
|
4.7
|
1.0
|
|
OG1
|
D:THR65
|
2.7
|
4.0
|
1.0
|
|
O3B
|
D:GDP1744
|
2.7
|
6.7
|
1.0
|
|
O
|
D:HOH2051
|
2.8
|
12.3
|
1.0
|
|
O1B
|
D:GDP1744
|
2.9
|
7.0
|
1.0
|
|
CB
|
D:THR65
|
2.9
|
2.5
|
1.0
|
|
O
|
D:HOH2287
|
3.0
|
4.4
|
1.0
|
|
PB
|
D:GDP1744
|
3.2
|
6.5
|
1.0
|
|
N
|
D:THR65
|
3.6
|
5.2
|
1.0
|
|
F3
|
D:ALF1745
|
3.6
|
13.1
|
1.0
|
|
CA
|
D:THR65
|
3.8
|
7.2
|
1.0
|
|
O2B
|
D:GDP1744
|
3.9
|
6.6
|
1.0
|
|
OG
|
D:SER45
|
4.0
|
4.1
|
1.0
|
|
O
|
D:LEU137
|
4.0
|
7.8
|
1.0
|
|
CG2
|
D:THR65
|
4.2
|
1.0
|
1.0
|
|
NZ
|
D:LYS44
|
4.3
|
1.0
|
1.0
|
|
O
|
D:THR65
|
4.3
|
7.0
|
1.0
|
|
N
|
D:GLY139
|
4.3
|
6.8
|
1.0
|
|
CA
|
D:PRO138
|
4.3
|
7.5
|
1.0
|
|
CE
|
D:LYS44
|
4.5
|
1.6
|
1.0
|
|
C
|
D:THR65
|
4.6
|
8.2
|
1.0
|
|
NA
|
D:NA1747
|
4.7
|
9.2
|
1.0
|
|
O3A
|
D:GDP1744
|
4.7
|
6.2
|
1.0
|
|
C
|
D:PRO138
|
4.7
|
7.6
|
1.0
|
|
C
|
D:VAL64
|
4.8
|
6.6
|
1.0
|
|
O2A
|
D:GDP1744
|
4.9
|
7.1
|
1.0
|
|
C
|
D:LEU137
|
4.9
|
8.0
|
1.0
|
|
N
|
D:VAL64
|
5.0
|
7.0
|
1.0
|
|
Reference:
J.S.Chappie,
S.Acharya,
M.Leonard,
S.L.Schmid,
F.Dyda.
G Domain Dimerization Controls Dynamin'S Assembly-Stimulated Gtpase Activity. Nature V. 465 435 2010.
ISSN: ISSN 0028-0836
PubMed: 20428113
DOI: 10.1038/NATURE09032
Page generated: Sun Dec 13 11:41:26 2020
|
