Fluorine in PDB 2x2f: Dynamin 1 Gtpase Dimer, Short Axis Form
Enzymatic activity of Dynamin 1 Gtpase Dimer, Short Axis Form
All present enzymatic activity of Dynamin 1 Gtpase Dimer, Short Axis Form:
3.6.5.5;
Protein crystallography data
The structure of Dynamin 1 Gtpase Dimer, Short Axis Form, PDB code: 2x2f
was solved by
J.S.Chappie,
S.Acharya,
M.Leonard,
S.L.Schmid,
F.Dyda,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
2.00
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.444,
81.274,
175.697,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
20 /
25.4
|
Other elements in 2x2f:
The structure of Dynamin 1 Gtpase Dimer, Short Axis Form also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Dynamin 1 Gtpase Dimer, Short Axis Form
(pdb code 2x2f). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Dynamin 1 Gtpase Dimer, Short Axis Form, PDB code: 2x2f:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 1 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1748
b:15.2
occ:1.00
|
F1
|
A:ALF1748
|
0.0
|
15.2
|
1.0
|
|
AL
|
A:ALF1748
|
1.8
|
14.3
|
1.0
|
|
F3
|
A:ALF1748
|
2.4
|
15.9
|
1.0
|
|
F4
|
A:ALF1748
|
2.5
|
16.1
|
1.0
|
|
NA
|
A:NA1750
|
2.7
|
14.6
|
1.0
|
|
O3B
|
A:GDP1747
|
2.7
|
7.1
|
1.0
|
|
O
|
A:HOH2027
|
2.8
|
13.8
|
1.0
|
|
N
|
A:VAL64
|
2.8
|
11.8
|
1.0
|
|
N
|
A:THR65
|
3.0
|
10.2
|
1.0
|
|
O
|
A:HOH2171
|
3.1
|
7.7
|
1.0
|
|
CB
|
A:VAL64
|
3.2
|
10.1
|
1.0
|
|
CA
|
A:VAL64
|
3.3
|
10.5
|
1.0
|
|
F2
|
A:ALF1748
|
3.6
|
15.3
|
1.0
|
|
O
|
A:GLY62
|
3.6
|
16.2
|
1.0
|
|
C
|
A:VAL64
|
3.6
|
10.3
|
1.0
|
|
MG
|
A:MG1749
|
3.7
|
7.9
|
1.0
|
|
CG2
|
A:VAL64
|
3.9
|
9.9
|
1.0
|
|
C
|
A:ILE63
|
3.9
|
15.0
|
1.0
|
|
PB
|
A:GDP1747
|
4.0
|
7.8
|
1.0
|
|
O
|
A:GLY60
|
4.1
|
12.8
|
1.0
|
|
OG1
|
A:THR65
|
4.1
|
6.9
|
1.0
|
|
CA
|
A:THR65
|
4.1
|
6.2
|
1.0
|
|
CA
|
A:ILE63
|
4.2
|
14.2
|
1.0
|
|
CB
|
A:THR65
|
4.2
|
4.4
|
1.0
|
|
O1B
|
A:GDP1747
|
4.3
|
9.7
|
1.0
|
|
O2A
|
A:GDP1747
|
4.3
|
6.8
|
1.0
|
|
O
|
A:THR65
|
4.4
|
9.6
|
1.0
|
|
CG1
|
A:VAL64
|
4.4
|
9.2
|
1.0
|
|
C
|
A:GLY62
|
4.7
|
16.0
|
1.0
|
|
C
|
A:THR65
|
4.7
|
8.5
|
1.0
|
|
OG
|
A:SER41
|
4.8
|
8.7
|
1.0
|
|
O
|
A:VAL64
|
4.9
|
10.9
|
1.0
|
|
O2B
|
A:GDP1747
|
4.9
|
6.3
|
1.0
|
|
N
|
A:SER41
|
4.9
|
7.4
|
1.0
|
|
O3A
|
A:GDP1747
|
4.9
|
9.1
|
1.0
|
|
O
|
A:HOH2066
|
5.0
|
7.4
|
1.0
|
|
O
|
A:ILE63
|
5.0
|
17.6
|
1.0
|
|
N
|
A:ILE63
|
5.0
|
15.4
|
1.0
|
|
CG1
|
A:ILE63
|
5.0
|
9.4
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 2 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1748
b:15.3
occ:1.00
|
F2
|
A:ALF1748
|
0.0
|
15.3
|
1.0
|
|
AL
|
A:ALF1748
|
1.8
|
14.3
|
1.0
|
|
NZ
|
A:LYS44
|
2.4
|
2.1
|
1.0
|
|
F3
|
A:ALF1748
|
2.5
|
15.9
|
1.0
|
|
F4
|
A:ALF1748
|
2.6
|
16.1
|
1.0
|
|
O3B
|
A:GDP1747
|
2.7
|
7.1
|
1.0
|
|
O
|
A:HOH2027
|
2.8
|
13.8
|
1.0
|
|
N
|
A:GLY139
|
2.9
|
9.7
|
1.0
|
|
O2B
|
A:GDP1747
|
3.1
|
6.3
|
1.0
|
|
CA
|
A:GLY139
|
3.2
|
10.2
|
1.0
|
|
N
|
A:SER41
|
3.3
|
7.4
|
1.0
|
|
CE
|
A:LYS44
|
3.4
|
2.0
|
1.0
|
|
PB
|
A:GDP1747
|
3.5
|
7.8
|
1.0
|
|
F1
|
A:ALF1748
|
3.6
|
15.2
|
1.0
|
|
CA
|
A:GLN40
|
3.7
|
8.6
|
1.0
|
|
O
|
A:HOH2066
|
3.8
|
7.4
|
1.0
|
|
C
|
A:PRO138
|
3.9
|
10.1
|
1.0
|
|
C
|
A:GLN40
|
4.0
|
8.2
|
1.0
|
|
O
|
A:GLY39
|
4.0
|
11.6
|
1.0
|
|
O1B
|
A:GDP1747
|
4.1
|
9.7
|
1.0
|
|
O
|
A:HOH2063
|
4.2
|
7.6
|
1.0
|
|
MG
|
A:MG1749
|
4.3
|
7.9
|
1.0
|
|
CA
|
A:SER41
|
4.3
|
7.3
|
1.0
|
|
C
|
A:GLY139
|
4.4
|
10.3
|
1.0
|
|
CA
|
A:PRO138
|
4.4
|
10.5
|
1.0
|
|
CG
|
A:GLN40
|
4.4
|
6.4
|
1.0
|
|
O
|
A:LEU137
|
4.5
|
10.8
|
1.0
|
|
CB
|
A:GLN40
|
4.5
|
6.7
|
1.0
|
|
N
|
A:GLN40
|
4.5
|
9.2
|
1.0
|
|
C
|
A:GLY39
|
4.6
|
9.9
|
1.0
|
|
NA
|
A:NA1750
|
4.7
|
14.6
|
1.0
|
|
O
|
A:GLY139
|
4.7
|
8.3
|
1.0
|
|
CD
|
A:LYS44
|
4.8
|
3.8
|
1.0
|
|
O
|
A:PRO138
|
4.9
|
10.9
|
1.0
|
|
O3A
|
A:GDP1747
|
4.9
|
9.1
|
1.0
|
|
N
|
A:ALA42
|
4.9
|
8.5
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 3 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1748
b:15.9
occ:1.00
|
F3
|
A:ALF1748
|
0.0
|
15.9
|
1.0
|
|
AL
|
A:ALF1748
|
1.8
|
14.3
|
1.0
|
|
F1
|
A:ALF1748
|
2.4
|
15.2
|
1.0
|
|
F2
|
A:ALF1748
|
2.5
|
15.3
|
1.0
|
|
NA
|
A:NA1750
|
2.6
|
14.6
|
1.0
|
|
O3B
|
A:GDP1747
|
2.7
|
7.1
|
1.0
|
|
O
|
A:HOH2027
|
2.8
|
13.8
|
1.0
|
|
N
|
A:SER41
|
2.8
|
7.4
|
1.0
|
|
CG
|
A:GLN40
|
2.9
|
6.4
|
1.0
|
|
O
|
A:GLY62
|
3.4
|
16.2
|
1.0
|
|
OG
|
A:SER41
|
3.4
|
8.7
|
1.0
|
|
F4
|
A:ALF1748
|
3.5
|
16.1
|
1.0
|
|
CA
|
A:SER41
|
3.6
|
7.3
|
1.0
|
|
C
|
A:GLN40
|
3.7
|
8.2
|
1.0
|
|
CA
|
A:GLN40
|
3.7
|
8.6
|
1.0
|
|
O
|
A:HOH2066
|
3.7
|
7.4
|
1.0
|
|
CB
|
A:GLN40
|
3.8
|
6.7
|
1.0
|
|
CD
|
A:GLN40
|
3.9
|
3.9
|
1.0
|
|
CB
|
A:SER41
|
4.0
|
9.0
|
1.0
|
|
PB
|
A:GDP1747
|
4.1
|
7.8
|
1.0
|
|
CA
|
A:ILE63
|
4.2
|
14.2
|
1.0
|
|
N
|
A:VAL64
|
4.2
|
11.8
|
1.0
|
|
O2B
|
A:GDP1747
|
4.3
|
6.3
|
1.0
|
|
C
|
A:GLY62
|
4.3
|
16.0
|
1.0
|
|
OE1
|
A:GLN40
|
4.4
|
9.4
|
1.0
|
|
NE2
|
A:GLN40
|
4.7
|
6.1
|
1.0
|
|
NZ
|
A:LYS44
|
4.7
|
2.1
|
1.0
|
|
OD2
|
D:ASP180
|
4.7
|
18.8
|
1.0
|
|
N
|
A:ILE63
|
4.7
|
15.4
|
1.0
|
|
N
|
A:GLY139
|
4.7
|
9.7
|
1.0
|
|
O
|
A:GLY60
|
4.7
|
12.8
|
1.0
|
|
O
|
A:GLN40
|
4.8
|
8.9
|
1.0
|
|
C
|
A:ILE63
|
4.8
|
15.0
|
1.0
|
|
C
|
A:SER41
|
5.0
|
7.0
|
1.0
|
|
CG1
|
A:ILE63
|
5.0
|
9.4
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 4 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1748
b:16.1
occ:1.00
|
F4
|
A:ALF1748
|
0.0
|
16.1
|
1.0
|
|
AL
|
A:ALF1748
|
1.8
|
14.3
|
1.0
|
|
MG
|
A:MG1749
|
1.9
|
7.9
|
1.0
|
|
F1
|
A:ALF1748
|
2.5
|
15.2
|
1.0
|
|
O3B
|
A:GDP1747
|
2.6
|
7.1
|
1.0
|
|
F2
|
A:ALF1748
|
2.6
|
15.3
|
1.0
|
|
O
|
A:HOH2063
|
2.6
|
7.6
|
1.0
|
|
OG1
|
A:THR65
|
2.8
|
6.9
|
1.0
|
|
O
|
A:HOH2027
|
2.9
|
13.8
|
1.0
|
|
O1B
|
A:GDP1747
|
2.9
|
9.7
|
1.0
|
|
CB
|
A:THR65
|
3.0
|
4.4
|
1.0
|
|
O
|
A:HOH2171
|
3.0
|
7.7
|
1.0
|
|
PB
|
A:GDP1747
|
3.1
|
7.8
|
1.0
|
|
F3
|
A:ALF1748
|
3.5
|
15.9
|
1.0
|
|
N
|
A:THR65
|
3.6
|
10.2
|
1.0
|
|
O2B
|
A:GDP1747
|
3.8
|
6.3
|
1.0
|
|
CA
|
A:THR65
|
3.8
|
6.2
|
1.0
|
|
OG
|
A:SER45
|
3.9
|
11.7
|
1.0
|
|
O
|
A:LEU137
|
4.1
|
10.8
|
1.0
|
|
NZ
|
A:LYS44
|
4.1
|
2.1
|
1.0
|
|
CG2
|
A:THR65
|
4.2
|
2.6
|
1.0
|
|
O
|
A:THR65
|
4.2
|
9.6
|
1.0
|
|
N
|
A:GLY139
|
4.3
|
9.7
|
1.0
|
|
CE
|
A:LYS44
|
4.4
|
2.0
|
1.0
|
|
CA
|
A:PRO138
|
4.5
|
10.5
|
1.0
|
|
C
|
A:THR65
|
4.5
|
8.5
|
1.0
|
|
O3A
|
A:GDP1747
|
4.6
|
9.1
|
1.0
|
|
NA
|
A:NA1750
|
4.7
|
14.6
|
1.0
|
|
C
|
A:VAL64
|
4.8
|
10.3
|
1.0
|
|
O2A
|
A:GDP1747
|
4.8
|
6.8
|
1.0
|
|
C
|
A:PRO138
|
4.8
|
10.1
|
1.0
|
|
C
|
A:LEU137
|
5.0
|
10.6
|
1.0
|
|
N
|
A:VAL64
|
5.0
|
11.8
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 5 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1747
b:11.9
occ:1.00
|
F1
|
D:ALF1747
|
0.0
|
11.9
|
1.0
|
|
AL
|
D:ALF1747
|
1.8
|
10.9
|
1.0
|
|
F3
|
D:ALF1747
|
2.5
|
14.3
|
1.0
|
|
F4
|
D:ALF1747
|
2.5
|
13.6
|
1.0
|
|
NA
|
D:NA1749
|
2.6
|
17.5
|
1.0
|
|
O3B
|
D:GDP1746
|
2.7
|
8.0
|
1.0
|
|
N
|
D:VAL64
|
2.7
|
8.2
|
1.0
|
|
O
|
D:HOH2020
|
2.7
|
8.2
|
1.0
|
|
N
|
D:THR65
|
3.1
|
7.3
|
1.0
|
|
CB
|
D:VAL64
|
3.2
|
5.4
|
1.0
|
|
O
|
D:HOH2150
|
3.2
|
9.8
|
1.0
|
|
CA
|
D:VAL64
|
3.3
|
6.2
|
1.0
|
|
F2
|
D:ALF1747
|
3.6
|
12.6
|
1.0
|
|
O
|
D:GLY62
|
3.6
|
10.6
|
1.0
|
|
C
|
D:VAL64
|
3.6
|
7.2
|
1.0
|
|
C
|
D:ILE63
|
3.8
|
10.1
|
1.0
|
|
MG
|
D:MG1748
|
3.8
|
8.2
|
1.0
|
|
CG2
|
D:VAL64
|
3.9
|
4.4
|
1.0
|
|
PB
|
D:GDP1746
|
4.0
|
7.9
|
1.0
|
|
CA
|
D:ILE63
|
4.0
|
9.8
|
1.0
|
|
OG1
|
D:THR65
|
4.0
|
10.7
|
1.0
|
|
O
|
D:GLY60
|
4.1
|
13.6
|
1.0
|
|
CA
|
D:THR65
|
4.2
|
7.2
|
1.0
|
|
CB
|
D:THR65
|
4.2
|
3.3
|
1.0
|
|
O2A
|
D:GDP1746
|
4.3
|
9.6
|
1.0
|
|
O1B
|
D:GDP1746
|
4.3
|
8.5
|
1.0
|
|
O
|
D:THR65
|
4.4
|
10.8
|
1.0
|
|
CG1
|
D:VAL64
|
4.4
|
6.2
|
1.0
|
|
C
|
D:GLY62
|
4.6
|
12.5
|
1.0
|
|
OG
|
D:SER41
|
4.6
|
10.6
|
1.0
|
|
C
|
D:THR65
|
4.8
|
9.6
|
1.0
|
|
O
|
D:HOH2052
|
4.8
|
12.4
|
1.0
|
|
CG1
|
D:ILE63
|
4.8
|
3.8
|
1.0
|
|
O
|
D:VAL64
|
4.9
|
8.2
|
1.0
|
|
N
|
D:ILE63
|
4.9
|
11.3
|
1.0
|
|
O
|
D:ILE63
|
4.9
|
13.2
|
1.0
|
|
N
|
D:SER41
|
4.9
|
6.9
|
1.0
|
|
O2B
|
D:GDP1746
|
4.9
|
5.6
|
1.0
|
|
O3A
|
D:GDP1746
|
5.0
|
7.3
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 6 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1747
b:12.6
occ:1.00
|
F2
|
D:ALF1747
|
0.0
|
12.6
|
1.0
|
|
AL
|
D:ALF1747
|
1.8
|
10.9
|
1.0
|
|
NZ
|
D:LYS44
|
2.4
|
6.5
|
1.0
|
|
F3
|
D:ALF1747
|
2.5
|
14.3
|
1.0
|
|
F4
|
D:ALF1747
|
2.6
|
13.6
|
1.0
|
|
O3B
|
D:GDP1746
|
2.7
|
8.0
|
1.0
|
|
O
|
D:HOH2020
|
2.8
|
8.2
|
1.0
|
|
N
|
D:GLY139
|
2.8
|
10.8
|
1.0
|
|
O2B
|
D:GDP1746
|
3.2
|
5.6
|
1.0
|
|
CA
|
D:GLY139
|
3.2
|
10.3
|
1.0
|
|
CE
|
D:LYS44
|
3.4
|
8.2
|
1.0
|
|
N
|
D:SER41
|
3.4
|
6.9
|
1.0
|
|
PB
|
D:GDP1746
|
3.4
|
7.9
|
1.0
|
|
F1
|
D:ALF1747
|
3.6
|
11.9
|
1.0
|
|
O
|
D:HOH2052
|
3.6
|
12.4
|
1.0
|
|
CA
|
D:GLN40
|
3.7
|
9.0
|
1.0
|
|
C
|
D:PRO138
|
3.8
|
10.2
|
1.0
|
|
C
|
D:GLN40
|
4.0
|
9.6
|
1.0
|
|
O
|
D:GLY39
|
4.1
|
10.0
|
1.0
|
|
O1B
|
D:GDP1746
|
4.1
|
8.5
|
1.0
|
|
O
|
D:HOH2050
|
4.1
|
7.5
|
1.0
|
|
CA
|
D:PRO138
|
4.2
|
8.6
|
1.0
|
|
MG
|
D:MG1748
|
4.3
|
8.2
|
1.0
|
|
CA
|
D:SER41
|
4.4
|
6.7
|
1.0
|
|
C
|
D:GLY139
|
4.4
|
12.5
|
1.0
|
|
O
|
D:LEU137
|
4.4
|
12.0
|
1.0
|
|
CG
|
D:GLN40
|
4.5
|
3.1
|
1.0
|
|
CB
|
D:GLN40
|
4.5
|
7.2
|
1.0
|
|
N
|
D:GLN40
|
4.5
|
9.6
|
1.0
|
|
NA
|
D:NA1749
|
4.7
|
17.5
|
1.0
|
|
C
|
D:GLY39
|
4.7
|
9.7
|
1.0
|
|
O
|
D:GLY139
|
4.7
|
13.0
|
1.0
|
|
O
|
D:PRO138
|
4.8
|
11.2
|
1.0
|
|
CD
|
D:LYS44
|
4.8
|
9.7
|
1.0
|
|
O3A
|
D:GDP1746
|
4.9
|
7.3
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 7 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1747
b:14.3
occ:1.00
|
F3
|
D:ALF1747
|
0.0
|
14.3
|
1.0
|
|
AL
|
D:ALF1747
|
1.8
|
10.9
|
1.0
|
|
F1
|
D:ALF1747
|
2.5
|
11.9
|
1.0
|
|
F2
|
D:ALF1747
|
2.5
|
12.6
|
1.0
|
|
NA
|
D:NA1749
|
2.7
|
17.5
|
1.0
|
|
O3B
|
D:GDP1746
|
2.7
|
8.0
|
1.0
|
|
O
|
D:HOH2020
|
2.8
|
8.2
|
1.0
|
|
CG
|
D:GLN40
|
2.9
|
3.1
|
1.0
|
|
N
|
D:SER41
|
2.9
|
6.9
|
1.0
|
|
OG
|
D:SER41
|
3.4
|
10.6
|
1.0
|
|
O
|
D:HOH2052
|
3.5
|
12.4
|
1.0
|
|
O
|
D:GLY62
|
3.5
|
10.6
|
1.0
|
|
F4
|
D:ALF1747
|
3.6
|
13.6
|
1.0
|
|
CA
|
D:GLN40
|
3.6
|
9.0
|
1.0
|
|
C
|
D:GLN40
|
3.6
|
9.6
|
1.0
|
|
CA
|
D:SER41
|
3.7
|
6.7
|
1.0
|
|
CB
|
D:GLN40
|
3.7
|
7.2
|
1.0
|
|
CD
|
D:GLN40
|
3.8
|
5.7
|
1.0
|
|
CA
|
D:ILE63
|
4.1
|
9.8
|
1.0
|
|
CB
|
D:SER41
|
4.1
|
9.7
|
1.0
|
|
PB
|
D:GDP1746
|
4.2
|
7.9
|
1.0
|
|
OE1
|
D:GLN40
|
4.2
|
7.4
|
1.0
|
|
N
|
D:VAL64
|
4.2
|
8.2
|
1.0
|
|
C
|
D:GLY62
|
4.3
|
12.5
|
1.0
|
|
O2B
|
D:GDP1746
|
4.4
|
5.6
|
1.0
|
|
NE2
|
D:GLN40
|
4.6
|
8.2
|
1.0
|
|
N
|
D:GLY139
|
4.6
|
10.8
|
1.0
|
|
NZ
|
D:LYS44
|
4.6
|
6.5
|
1.0
|
|
N
|
D:ILE63
|
4.7
|
11.3
|
1.0
|
|
OD2
|
A:ASP180
|
4.7
|
21.8
|
1.0
|
|
C
|
D:ILE63
|
4.7
|
10.1
|
1.0
|
|
O
|
D:GLN40
|
4.8
|
11.0
|
1.0
|
|
O
|
D:GLY60
|
4.8
|
13.6
|
1.0
|
|
CB
|
D:ILE63
|
4.9
|
8.3
|
1.0
|
|
CG1
|
D:ILE63
|
4.9
|
3.8
|
1.0
|
|
N
|
D:GLN40
|
5.0
|
9.6
|
1.0
|
|
CA
|
D:GLY139
|
5.0
|
10.3
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 2x2f
Go back to
Fluorine Binding Sites List in 2x2f
Fluorine binding site 8 out
of 8 in the Dynamin 1 Gtpase Dimer, Short Axis Form
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1747
b:13.6
occ:1.00
|
F4
|
D:ALF1747
|
0.0
|
13.6
|
1.0
|
|
AL
|
D:ALF1747
|
1.8
|
10.9
|
1.0
|
|
MG
|
D:MG1748
|
2.0
|
8.2
|
1.0
|
|
F1
|
D:ALF1747
|
2.5
|
11.9
|
1.0
|
|
F2
|
D:ALF1747
|
2.6
|
12.6
|
1.0
|
|
OG1
|
D:THR65
|
2.6
|
10.7
|
1.0
|
|
O3B
|
D:GDP1746
|
2.6
|
8.0
|
1.0
|
|
O
|
D:HOH2050
|
2.7
|
7.5
|
1.0
|
|
O
|
D:HOH2020
|
2.8
|
8.2
|
1.0
|
|
CB
|
D:THR65
|
2.9
|
3.3
|
1.0
|
|
O1B
|
D:GDP1746
|
2.9
|
8.5
|
1.0
|
|
O
|
D:HOH2150
|
3.0
|
9.8
|
1.0
|
|
PB
|
D:GDP1746
|
3.2
|
7.9
|
1.0
|
|
N
|
D:THR65
|
3.5
|
7.3
|
1.0
|
|
F3
|
D:ALF1747
|
3.6
|
14.3
|
1.0
|
|
CA
|
D:THR65
|
3.8
|
7.2
|
1.0
|
|
O2B
|
D:GDP1746
|
3.9
|
5.6
|
1.0
|
|
OG
|
D:SER45
|
4.0
|
4.2
|
1.0
|
|
NZ
|
D:LYS44
|
4.1
|
6.5
|
1.0
|
|
CG2
|
D:THR65
|
4.1
|
2.4
|
1.0
|
|
O
|
D:LEU137
|
4.2
|
12.0
|
1.0
|
|
O
|
D:THR65
|
4.2
|
10.8
|
1.0
|
|
CA
|
D:PRO138
|
4.3
|
8.6
|
1.0
|
|
N
|
D:GLY139
|
4.3
|
10.8
|
1.0
|
|
CE
|
D:LYS44
|
4.4
|
8.2
|
1.0
|
|
C
|
D:THR65
|
4.5
|
9.6
|
1.0
|
|
NA
|
D:NA1749
|
4.6
|
17.5
|
1.0
|
|
O3A
|
D:GDP1746
|
4.7
|
7.3
|
1.0
|
|
C
|
D:VAL64
|
4.7
|
7.2
|
1.0
|
|
O2A
|
D:GDP1746
|
4.7
|
9.6
|
1.0
|
|
C
|
D:PRO138
|
4.8
|
10.2
|
1.0
|
|
N
|
D:VAL64
|
4.9
|
8.2
|
1.0
|
|
C
|
D:LEU137
|
4.9
|
9.8
|
1.0
|
|
CB
|
D:SER45
|
5.0
|
5.0
|
1.0
|
|
N
|
D:PRO138
|
5.0
|
8.3
|
1.0
|
|
Reference:
J.S.Chappie,
S.Acharya,
M.Leonard,
S.L.Schmid,
F.Dyda.
G Domain Dimerization Controls Dynamin'S Assembly-Stimulated Gtpase Activity. Nature V. 465 435 2010.
ISSN: ISSN 0028-0836
PubMed: 20428113
DOI: 10.1038/NATURE09032
Page generated: Wed Jul 31 16:33:55 2024
|
