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Fluorine in PDB 2yis: Triazolopyridine Inhibitors of P38 Kinase.

Enzymatic activity of Triazolopyridine Inhibitors of P38 Kinase.

All present enzymatic activity of Triazolopyridine Inhibitors of P38 Kinase.:
2.7.11.24;

Protein crystallography data

The structure of Triazolopyridine Inhibitors of P38 Kinase., PDB code: 2yis was solved by D.S.Millan, M.Anderson, R.Bazin, M.E.Bunnage, J.L.Burrows, K.J.Butcher, P.G.Dodd, T.J.Evans, D.A.Fairman, S.J.Hughes, S.L.Irving, I.C.Kilty, A.Lemaitre, R.A.Lewthwaite, A.Mahnke, J.P.Mathais, J.Philip, C.Phillips, R.T.Smith, M.H.Stefaniack, M.Yeadon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.43 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.450, 74.100, 77.140, 90.00, 90.00, 90.00
R / Rfree (%) 21.43 / 25.49

Other elements in 2yis:

The structure of Triazolopyridine Inhibitors of P38 Kinase. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Triazolopyridine Inhibitors of P38 Kinase. (pdb code 2yis). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Triazolopyridine Inhibitors of P38 Kinase., PDB code: 2yis:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 2yis

Go back to Fluorine Binding Sites List in 2yis
Fluorine binding site 1 out of 2 in the Triazolopyridine Inhibitors of P38 Kinase.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Triazolopyridine Inhibitors of P38 Kinase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1354

b:32.6
occ:1.00
F18 A:I461354 0.0 32.6 1.0
C10 A:I461354 1.3 30.0 1.0
C4 A:I461354 2.4 25.4 1.0
C3 A:I461354 2.4 28.8 1.0
CD1 A:ILE259 3.2 53.0 1.0
CG1 A:ILE259 3.4 37.9 1.0
C2 A:I461354 3.6 23.7 1.0
C1 A:I461354 3.6 25.9 1.0
CD1 A:LEU232 3.9 30.9 1.0
CG2 A:ILE259 4.0 36.0 1.0
CG A:PRO242 4.0 32.0 1.0
C9 A:I461354 4.1 24.8 1.0
CD2 A:LEU232 4.2 32.5 1.0
CD1 A:LEU236 4.2 28.4 1.0
CD2 A:LEU236 4.2 27.8 1.0
CD2 A:LEU195 4.2 34.2 1.0
CD1 A:LEU195 4.3 32.6 1.0
CD A:PRO242 4.3 28.1 1.0
CB A:ILE259 4.3 36.5 1.0
CG A:LEU232 4.5 30.8 1.0
CG A:LEU236 4.7 28.3 1.0
CG A:LEU195 4.8 33.0 1.0

Fluorine binding site 2 out of 2 in 2yis

Go back to Fluorine Binding Sites List in 2yis
Fluorine binding site 2 out of 2 in the Triazolopyridine Inhibitors of P38 Kinase.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Triazolopyridine Inhibitors of P38 Kinase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1354

b:39.7
occ:1.00
F19 A:I461354 0.0 39.7 1.0
C12 A:I461354 1.3 29.1 1.0
C7 A:I461354 2.2 21.5 1.0
N16 A:I461354 2.3 25.6 1.0
O A:LYS249 2.6 21.2 1.0
CZ2 A:TRP197 3.3 23.1 1.0
CE2 A:TRP197 3.3 24.0 1.0
C A:LYS249 3.3 22.5 1.0
C11 A:I461354 3.5 21.4 1.0
C6 A:I461354 3.5 25.6 1.0
NE1 A:TRP197 3.6 23.2 1.0
CB A:LYS249 3.6 22.5 1.0
CH2 A:TRP197 3.8 22.7 1.0
CD2 A:TRP197 3.9 20.8 1.0
C5 A:I461354 4.0 21.8 1.0
N A:ILE250 4.1 21.0 1.0
CA A:LYS249 4.1 20.7 1.0
O A:HOH2088 4.1 41.1 1.0
CA A:ILE250 4.2 20.9 1.0
CD1 A:TRP197 4.3 23.8 1.0
CZ3 A:TRP197 4.4 22.3 1.0
CE3 A:TRP197 4.4 21.5 1.0
CG A:TRP197 4.5 21.3 1.0
C14 A:I461354 4.7 19.2 1.0
CG1 A:ILE250 4.7 24.6 1.0
CG A:LYS249 4.9 28.0 1.0
N17 A:I461354 5.0 20.5 1.0

Reference:

D.S.Millan, M.E.Bunnage, J.L.Burrows, K.J.Butcher, P.G.Dodd, T.J.Evans, D.A.Fairman, S.J.Hughes, I.C.Kilty, A.Lemaitre, R.A.Lewthwaite, A.Mahnke, J.P.Mathias, J.Philip, R.T.Smith, M.H.Stefaniak, M.Yeadon, C.Phillips. Design and Synthesis of Inhaled P38 Inhibitors For the Treatment of Chronic Obstructive Pulmonary Disease. J.Med.Chem. V. 54 7797 2011.
ISSN: ISSN 0022-2623
PubMed: 21888439
DOI: 10.1021/JM200677B
Page generated: Mon Jul 14 15:00:36 2025

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