Fluorine in PDB 2yk7: Structure of Neisseria Los-Specific Sialyltransferase (Nst), in Complex with Cmp-3F-NEU5AC.

The structure of Structure of Neisseria Los-Specific Sialyltransferase (Nst), in Complex with Cmp-3F-NEU5AC., PDB code: 2yk7 was solved by L.Y.C.Lin, B.Rakic, C.P.C.Chiu, E.Lameignere, W.W.Wakarchuk, S.G.Withers, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.33 / 2.18
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	42.762, 101.413, 166.570, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 25.8

The binding sites of Fluorine atom in the Structure of Neisseria Los-Specific Sialyltransferase (Nst), in Complex with Cmp-3F-NEU5AC. (pdb code 2yk7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Structure of Neisseria Los-Specific Sialyltransferase (Nst), in Complex with Cmp-3F-NEU5AC., PDB code: 2yk7:

Fluorine binding site 1 out of 1 in the Structure of Neisseria Los-Specific Sialyltransferase (Nst), in Complex with Cmp-3F-NEU5AC.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Neisseria Los-Specific Sialyltransferase (Nst), in Complex with Cmp-3F-NEU5AC. within 5.0Å range: probe atom residue distance (Å) B Occ A:F1371 b:45.8 occ:1.00 F3A A:CSF1371 0.0 45.8 1.0 C3A A:CSF1371 1.4 43.5 1.0 NH2 A:ARG282 2.2 33.5 1.0 C4A A:CSF1371 2.3 44.0 1.0 C2A A:CSF1371 2.6 39.7 1.0 O4A A:CSF1371 2.7 44.6 1.0 NE A:ARG282 2.7 31.5 1.0 OAA A:CSF1371 2.7 40.3 1.0 CZ A:ARG282 2.8 34.2 1.0 C5A A:CSF1371 2.9 47.0 1.0 C1A A:CSF1371 2.9 36.4 1.0 O10 A:CSF1371 3.4 44.0 1.0 O6A A:CSF1371 3.4 45.7 1.0 CE1 A:HIS280 3.5 34.1 1.0 O1A A:CSF1371 3.7 40.6 1.0 NE2 A:HIS280 3.7 31.8 1.0 C6A A:CSF1371 3.8 47.9 1.0 N5A A:CSF1371 3.8 46.6 1.0 C10 A:CSF1371 4.0 46.5 1.0 OBA A:CSF1371 4.0 43.4 1.0 CD A:ARG282 4.1 36.0 1.0 NH1 A:ARG282 4.1 33.8 1.0 CG A:PRO257 4.3 29.6 1.0 ND1 A:HIS280 4.5 30.3 1.0 CD2 A:HIS280 4.9 30.7 1.0 CG A:ARG282 4.9 31.0 1.0

L.Y.C.Lin, B.Rakic, C.P.C.Chiu, E.Lameignere, W.W.Wakarchuk, S.G.Withers, N.C.J.Strynadka. Structure and Mechanism of the Lipooligosaccharide Sialyltransferase From Neisseria Meningitidis J.Biol.Chem. V. 286 37237 2011.
ISSN: ISSN 0021-9258
PubMed: 21880735
DOI: 10.1074/JBC.M111.249920