Fluorine in PDB 316d: Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti- Leukemia Activity

The structure of Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti- Leukemia Activity, PDB code: 316d was solved by F.Takusagawa, K.T.Takusagawa, R.G.Carlson, R.F.Weaver, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	7.00 / 3.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	62.770, 62.770, 43.030, 90.00, 90.00, 120.00
R / Rfree (%)	21.2 / 26.1

The binding sites of Fluorine atom in the Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti- Leukemia Activity (pdb code 316d). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti- Leukemia Activity, PDB code: 316d:

Fluorine binding site 1 out of 1 in the Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti- Leukemia Activity


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti- Leukemia Activity within 5.0Å range: probe atom residue distance (Å) B Occ C:F6 b:23.5 occ:1.00 F8 C:PXF6 0.0 23.5 1.0 C8 C:PXF6 1.3 23.5 1.0 C7 C:PXF6 2.4 20.6 1.0 C9 C:PXF6 2.4 28.8 1.0 C' C:PXF6 2.9 38.1 1.0 C2' B:DG12 3.0 48.8 1.0 O4' B:DC13 3.1 37.2 1.0 C3' B:DG12 3.3 53.1 1.0 O' C:PXF6 3.4 53.0 1.0 N C:THR7 3.5 42.3 1.0 N1 B:DC13 3.6 38.1 1.0 C6 C:PXF6 3.7 24.2 1.0 C5' B:DC13 3.7 46.8 1.0 C14 C:PXF6 3.7 21.2 1.0 CG2 C:THR7 3.7 42.8 1.0 C1' B:DC13 3.8 36.5 1.0 C2 B:DC13 3.9 32.3 1.0 C6 B:DC13 3.9 41.5 1.0 O3' B:DG12 3.9 57.7 1.0 C1' B:DG12 4.0 47.1 1.0 C4' B:DC13 4.0 44.0 1.0 N9 B:DG12 4.0 44.6 1.0 C13 C:PXF6 4.2 22.3 1.0 H C:THR7 4.2 1.5 0.0 O2 B:DC13 4.2 29.7 1.0 O5' B:DC13 4.2 50.4 1.0 C4 B:DG12 4.3 41.8 1.0 N3 B:DG12 4.4 40.9 1.0 N3 B:DC13 4.4 33.4 1.0 C5 B:DC13 4.4 39.4 1.0 O4' B:DG12 4.4 48.3 1.0 CB C:THR7 4.5 47.7 1.0 CA C:THR7 4.5 46.5 1.0 C4' B:DG12 4.5 47.8 1.0 OG1 C:THR7 4.5 48.3 1.0 C8 B:DG12 4.6 38.3 1.0 C4 B:DC13 4.6 38.8 1.0 C2' B:DC13 4.7 40.3 1.0 P B:DC13 4.8 50.6 1.0 N10 C:PXF6 4.8 11.6 1.0 C16 C:PXF6 4.9 18.6 1.0 C5 B:DG12 5.0 38.6 1.0

F.Takusagawa, K.T.Takusagawa, R.G.Carlson, R.F.Weaver. Selectivity of F8-Actinomycin D For Rna:Dna Hybrids and Its Anti-Leukemia Activity. Bioorg.Med.Chem. V. 5 1197 1997.
ISSN: ISSN 0968-0896
PubMed: 9222513
DOI: 10.1016/S0968-0896(97)00062-X