Atomistry » Fluorine » PDB 2z78-3az8 » 3aeb
Atomistry »
  Fluorine »
    PDB 2z78-3az8 »
      3aeb »

Fluorine in PDB 3aeb: Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide

Enzymatic activity of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide

All present enzymatic activity of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide:
1.3.5.1;

Protein crystallography data

The structure of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide, PDB code: 3aeb was solved by S.Harada, T.Sasaki, M.Shindo, Y.Kido, D.K.Inaoka, J.Omori, A.Osanai, K.Sakamoto, J.Mao, S.Matsuoka, M.Inoue, T.Honma, A.Tanaka, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.43 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.708, 84.255, 294.707, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 25.7

Other elements in 3aeb:

The structure of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide also contains other interesting chemical elements:

Iron (Fe) 10 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide (pdb code 3aeb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide, PDB code: 3aeb:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 3aeb

Go back to Fluorine Binding Sites List in 3aeb
Fluorine binding site 1 out of 3 in the Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1201

b:68.0
occ:1.00
F1 C:F7A1201 0.0 68.0 1.0
C1 C:F7A1201 1.3 68.1 1.0
F3 C:F7A1201 2.1 67.5 1.0
F2 C:F7A1201 2.2 68.1 1.0
C2 C:F7A1201 2.3 68.6 1.0
C8 C:F7A1201 2.7 70.7 1.0
C3 C:F7A1201 2.8 69.4 1.0
NE1 B:TRP173 3.1 56.4 1.0
N1 C:F7A1201 3.1 71.9 1.0
O1 C:F7A1201 3.1 71.5 1.0
CD1 B:TRP173 3.1 55.7 1.0
C7 C:F7A1201 3.5 68.5 1.0
CB B:PRO169 3.7 52.5 1.0
C9 C:F7A1201 3.9 73.1 1.0
C B:PRO169 3.9 51.8 1.0
O B:PRO169 4.0 52.3 1.0
N B:SER170 4.1 51.3 1.0
C4 C:F7A1201 4.2 68.8 1.0
OH D:TYR91 4.2 65.0 1.0
CD1 B:ILE218 4.3 50.2 1.0
C14 C:F7A1201 4.4 73.4 1.0
CE2 B:TRP173 4.4 57.2 1.0
OG B:SER170 4.4 52.0 1.0
CA B:PRO169 4.5 52.0 1.0
CG B:TRP173 4.5 55.8 1.0
CA B:SER170 4.5 51.4 1.0
CE2 D:TYR91 4.7 65.9 1.0
C6 C:F7A1201 4.7 68.6 1.0
NH1 C:ARG46 4.8 62.1 1.0
C10 C:F7A1201 4.8 74.0 1.0
CG B:PRO169 4.9 52.4 1.0
CZ D:TYR91 4.9 64.8 1.0
C5 C:F7A1201 5.0 68.5 1.0

Fluorine binding site 2 out of 3 in 3aeb

Go back to Fluorine Binding Sites List in 3aeb
Fluorine binding site 2 out of 3 in the Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1201

b:68.1
occ:1.00
F2 C:F7A1201 0.0 68.1 1.0
C1 C:F7A1201 1.3 68.1 1.0
F3 C:F7A1201 2.2 67.5 1.0
F1 C:F7A1201 2.2 68.0 1.0
C2 C:F7A1201 2.3 68.6 1.0
OH D:TYR91 3.0 65.0 1.0
NH1 C:ARG46 3.1 62.1 1.0
C7 C:F7A1201 3.1 68.5 1.0
C3 C:F7A1201 3.2 69.4 1.0
CZ D:TYR91 3.4 64.8 1.0
O1 C:F7A1201 3.4 71.5 1.0
CE2 D:TYR91 3.4 65.9 1.0
OD2 D:ASP90 3.4 59.1 1.0
C8 C:F7A1201 3.5 70.7 1.0
CD1 B:TRP173 3.7 55.7 1.0
CB D:ASP90 4.0 61.1 1.0
CZ C:ARG46 4.0 60.8 1.0
NE1 B:TRP173 4.1 56.4 1.0
CG D:ASP90 4.1 60.2 1.0
NH2 C:ARG46 4.1 60.9 1.0
C6 C:F7A1201 4.4 68.6 1.0
CE1 D:TYR91 4.4 63.7 1.0
C4 C:F7A1201 4.4 68.8 1.0
CD2 D:TYR91 4.4 66.0 1.0
N1 C:F7A1201 4.5 71.9 1.0
C5 C:F7A1201 4.9 68.5 1.0
CG B:TRP173 4.9 55.8 1.0
OG B:SER170 5.0 52.0 1.0
CD2 B:HIS216 5.0 50.9 1.0

Fluorine binding site 3 out of 3 in 3aeb

Go back to Fluorine Binding Sites List in 3aeb
Fluorine binding site 3 out of 3 in the Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1201

b:67.5
occ:1.00
F3 C:F7A1201 0.0 67.5 1.0
C1 C:F7A1201 1.3 68.1 1.0
F1 C:F7A1201 2.1 68.0 1.0
F2 C:F7A1201 2.2 68.1 1.0
C2 C:F7A1201 2.3 68.6 1.0
C7 C:F7A1201 2.6 68.5 1.0
OG B:SER170 2.9 52.0 1.0
OD2 D:ASP90 3.6 59.1 1.0
C3 C:F7A1201 3.6 69.4 1.0
CD2 B:HIS216 3.6 50.9 1.0
CA B:SER170 3.9 51.4 1.0
CB B:SER170 4.0 51.0 1.0
C6 C:F7A1201 4.0 68.6 1.0
CD1 B:ILE218 4.1 50.2 1.0
N B:SER170 4.1 51.3 1.0
C8 C:F7A1201 4.3 70.7 1.0
CD1 B:TRP173 4.3 55.7 1.0
CG D:ASP90 4.3 60.2 1.0
NE2 B:HIS216 4.4 51.2 1.0
NH1 C:ARG46 4.5 62.1 1.0
C B:PRO169 4.6 51.8 1.0
CG B:HIS216 4.6 50.7 1.0
C4 C:F7A1201 4.7 68.8 1.0
O1 C:F7A1201 4.7 71.5 1.0
O B:PRO169 4.8 52.3 1.0
NH2 C:ARG46 4.8 60.9 1.0
NE1 B:TRP173 4.8 56.4 1.0
O B:ARG214 4.8 47.2 1.0
C5 C:F7A1201 4.9 68.5 1.0
N1 C:F7A1201 4.9 71.9 1.0
CB D:ASP90 4.9 61.1 1.0

Reference:

S.Harada, T.Sasaki, M.Shindo, Y.Kido, D.K.Inaoka, J.Omori, A.Osanai, K.Sakamoto, J.Mao, S.Matsuoka, M.Inoue, T.Honma, A.Tanaka, K.Kita. Crystal Structure of Porcine Heart Mitochondrial Complex II Bound with N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide To Be Published.
Page generated: Wed Jul 31 17:07:43 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy