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Fluorine in PDB 3b67: Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23

Protein crystallography data

The structure of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23, PDB code: 3b67 was solved by C.E.Bohl, D.D.Miller, J.T.Dalton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.90 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.865, 66.201, 69.741, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 27.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 (pdb code 3b67). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23, PDB code: 3b67:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 3b67

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Fluorine binding site 1 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:17.2
occ:1.00
F1 A:B671 0.0 17.2 1.0
C7 A:B671 1.3 17.3 1.0
F3 A:B671 2.1 19.6 1.0
F2 A:B671 2.1 18.0 1.0
C4 A:B671 2.4 17.4 1.0
C5 A:B671 2.7 16.6 1.0
CD1 A:LEU873 3.4 15.0 1.0
C3 A:B671 3.7 16.6 1.0
SD A:MET787 3.9 18.6 1.0
O10 A:B671 4.0 15.2 1.0
O1 A:B671 4.0 23.1 1.0
C6 A:B671 4.1 18.3 1.0
CG2 A:VAL746 4.1 14.7 1.0
CE A:MET787 4.1 8.4 1.0
CD2 A:LEU873 4.2 11.8 1.0
SD A:MET742 4.2 13.5 1.0
N8 A:B671 4.3 16.9 1.0
CE2 A:PHE764 4.3 14.6 1.0
CG A:LEU873 4.4 16.0 1.0
C2 A:B671 4.8 15.6 1.0
C10 A:B671 4.8 16.5 1.0
CD2 A:PHE764 4.9 13.4 1.0
CA A:VAL746 4.9 14.8 1.0
N9 A:B671 4.9 16.7 1.0
C1 A:B671 4.9 16.0 1.0

Fluorine binding site 2 out of 8 in 3b67

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Fluorine binding site 2 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:18.0
occ:1.00
F2 A:B671 0.0 18.0 1.0
C7 A:B671 1.3 17.3 1.0
F1 A:B671 2.1 17.2 1.0
F3 A:B671 2.2 19.6 1.0
C4 A:B671 2.4 17.4 1.0
O1 A:B671 2.7 23.1 1.0
C3 A:B671 3.2 16.6 1.0
CB A:MET745 3.2 16.6 1.0
N A:VAL746 3.2 14.4 1.0
C5 A:B671 3.3 16.6 1.0
N8 A:B671 3.3 16.9 1.0
C A:MET745 3.5 14.3 1.0
CA A:VAL746 3.6 14.8 1.0
CG2 A:VAL746 3.6 14.7 1.0
O A:MET745 3.9 16.7 1.0
CA A:MET745 4.0 14.7 1.0
O A:MET742 4.1 10.1 1.0
CB A:VAL746 4.3 14.2 1.0
SD A:MET742 4.3 13.5 1.0
CG A:MET745 4.4 23.5 1.0
C2 A:B671 4.5 15.6 1.0
C6 A:B671 4.6 18.3 1.0
CD1 A:LEU873 4.6 15.0 1.0
O2 A:B671 4.7 18.8 1.0
SD A:MET787 4.8 18.6 1.0
CB A:MET749 4.9 13.1 1.0
C A:VAL746 4.9 14.6 1.0
N A:MET745 4.9 12.7 1.0

Fluorine binding site 3 out of 8 in 3b67

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Fluorine binding site 3 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:19.6
occ:1.00
F3 A:B671 0.0 19.6 1.0
C7 A:B671 1.3 17.3 1.0
F1 A:B671 2.1 17.2 1.0
F2 A:B671 2.2 18.0 1.0
C4 A:B671 2.4 17.4 1.0
O1 A:B671 2.5 23.1 1.0
C3 A:B671 2.9 16.6 1.0
N8 A:B671 3.0 16.9 1.0
CE A:MET749 3.5 9.2 1.0
CE2 A:PHE764 3.5 14.6 1.0
C5 A:B671 3.5 16.6 1.0
CD2 A:PHE764 3.7 13.4 1.0
SD A:MET787 3.8 18.6 1.0
CG A:MET749 3.8 10.1 1.0
CB A:MET749 3.8 13.1 1.0
O2 A:B671 4.2 18.8 1.0
C2 A:B671 4.3 15.6 1.0
CA A:VAL746 4.3 14.8 1.0
CE A:MET787 4.3 8.4 1.0
O A:MET745 4.4 16.7 1.0
SD A:MET749 4.5 13.3 1.0
N A:VAL746 4.5 14.4 1.0
C A:MET745 4.6 14.3 1.0
CG2 A:VAL746 4.6 14.7 1.0
CZ A:PHE764 4.6 12.7 1.0
C6 A:B671 4.7 18.3 1.0
CG A:PHE764 4.9 13.7 1.0
CB A:MET745 5.0 16.6 1.0

Fluorine binding site 4 out of 8 in 3b67

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Fluorine binding site 4 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:14.8
occ:1.00
F17 A:B671 0.0 14.8 1.0
C17 A:B671 1.4 16.2 1.0
C16 A:B671 2.4 15.2 1.0
C18 A:B671 2.4 18.1 1.0
O14 A:B671 2.7 14.7 1.0
F18 A:B671 2.8 19.6 1.0
N9 A:B671 3.1 16.7 1.0
C10 A:B671 3.1 16.5 1.0
C6 A:B671 3.2 18.3 1.0
O10 A:B671 3.3 15.2 1.0
C5 A:B671 3.4 16.6 1.0
C13 A:B671 3.6 16.3 1.0
C21 A:B671 3.6 16.1 1.0
CE A:MET745 3.6 23.3 1.0
C19 A:B671 3.7 16.7 1.0
C11 A:B671 3.9 18.3 1.0
C1 A:B671 3.9 16.0 1.0
CA A:GLY708 4.1 14.7 1.0
C20 A:B671 4.1 17.1 1.0
CZ2 A:TRP741 4.2 17.5 1.0
C4 A:B671 4.3 17.4 1.0
SD A:MET742 4.3 13.5 1.0
O11 A:B671 4.4 21.2 1.0
CE2 A:TRP741 4.4 17.0 1.0
C2 A:B671 4.6 15.6 1.0
NE1 A:TRP741 4.6 17.1 1.0
CE A:MET742 4.7 7.0 1.0
CE A:MET895 4.7 24.2 1.0
F21 A:B671 4.7 16.8 1.0
CH2 A:TRP741 4.7 18.2 1.0
C3 A:B671 4.8 16.6 1.0
F19 A:B671 4.8 20.6 1.0

Fluorine binding site 5 out of 8 in 3b67

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Fluorine binding site 5 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:19.6
occ:1.00
F18 A:B671 0.0 19.6 1.0
C18 A:B671 1.4 18.1 1.0
C17 A:B671 2.4 16.2 1.0
C19 A:B671 2.4 16.7 1.0
F19 A:B671 2.8 20.6 1.0
F17 A:B671 2.8 14.8 1.0
CA A:MET742 3.2 13.4 1.0
NE1 A:TRP741 3.4 17.1 1.0
CE2 A:TRP741 3.4 17.0 1.0
CD1 A:TRP741 3.4 16.1 1.0
N A:MET742 3.5 14.2 1.0
SD A:MET742 3.5 13.5 1.0
CD2 A:TRP741 3.5 16.1 1.0
CG A:TRP741 3.5 13.8 1.0
C16 A:B671 3.7 15.2 1.0
CG A:MET745 3.7 23.5 1.0
C20 A:B671 3.7 17.1 1.0
C A:TRP741 3.7 15.4 1.0
CE A:MET745 3.7 23.3 1.0
O A:TRP741 3.8 17.2 1.0
CB A:MET742 3.9 12.9 1.0
CZ2 A:TRP741 4.1 17.5 1.0
C21 A:B671 4.1 16.1 1.0
CE3 A:TRP741 4.2 16.6 1.0
CE A:MET742 4.3 7.0 1.0
CB A:MET745 4.3 16.6 1.0
CG A:MET742 4.3 11.0 1.0
CB A:TRP741 4.4 14.3 1.0
C A:MET742 4.4 11.8 1.0
SD A:MET745 4.5 30.4 1.0
O A:MET742 4.6 10.1 1.0
CA A:TRP741 4.7 13.9 1.0
CH2 A:TRP741 4.7 18.2 1.0
CZ3 A:TRP741 4.8 17.9 1.0
O14 A:B671 4.8 14.7 1.0
F20 A:B671 4.8 16.1 1.0

Fluorine binding site 6 out of 8 in 3b67

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Fluorine binding site 6 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:20.6
occ:1.00
F19 A:B671 0.0 20.6 1.0
C19 A:B671 1.4 16.7 1.0
C18 A:B671 2.4 18.1 1.0
C20 A:B671 2.4 17.1 1.0
F20 A:B671 2.8 16.1 1.0
F18 A:B671 2.8 19.6 1.0
N A:MET742 3.1 14.2 1.0
CE3 A:TRP741 3.2 16.6 1.0
O A:HOH101 3.2 11.2 1.0
CD2 A:TRP741 3.3 16.1 1.0
CB A:MET742 3.3 12.9 1.0
CA A:MET742 3.5 13.4 1.0
CG A:TRP741 3.5 13.8 1.0
CB A:TRP741 3.6 14.3 1.0
C21 A:B671 3.6 16.1 1.0
C17 A:B671 3.6 16.2 1.0
C A:TRP741 3.9 15.4 1.0
CZ3 A:TRP741 3.9 17.9 1.0
NE2 A:HIS874 4.0 17.3 1.0
CE A:MET742 4.1 7.0 1.0
CE2 A:TRP741 4.1 17.0 1.0
C16 A:B671 4.1 15.2 1.0
SD A:MET742 4.2 13.5 1.0
CA A:TRP741 4.3 13.9 1.0
CG A:MET742 4.3 11.0 1.0
CD1 A:TRP741 4.4 16.1 1.0
CD2 A:HIS874 4.4 15.1 1.0
O A:GLN738 4.6 18.3 1.0
CH2 A:TRP741 4.7 18.2 1.0
NE1 A:TRP741 4.7 17.1 1.0
O A:TRP741 4.7 17.2 1.0
CZ2 A:TRP741 4.8 17.5 1.0
F17 A:B671 4.8 14.8 1.0
F21 A:B671 4.8 16.8 1.0
N A:TRP741 5.0 14.2 1.0
C A:MET742 5.0 11.8 1.0

Fluorine binding site 7 out of 8 in 3b67

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Fluorine binding site 7 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:16.1
occ:1.00
F20 A:B671 0.0 16.1 1.0
C20 A:B671 1.4 17.1 1.0
C21 A:B671 2.4 16.1 1.0
C19 A:B671 2.4 16.7 1.0
F19 A:B671 2.8 20.6 1.0
F21 A:B671 2.8 16.8 1.0
CG2 A:VAL903 3.6 17.5 1.0
C16 A:B671 3.6 15.2 1.0
C18 A:B671 3.7 18.1 1.0
CZ3 A:TRP741 3.7 17.9 1.0
CE3 A:TRP741 3.8 16.6 1.0
CG2 A:ILE898 4.1 14.1 1.0
C17 A:B671 4.1 16.2 1.0
CG1 A:ILE899 4.2 14.9 1.0
CD2 A:HIS874 4.2 15.1 1.0
CE A:MET742 4.4 7.0 1.0
NE2 A:HIS874 4.5 17.3 1.0
CH2 A:TRP741 4.5 18.2 1.0
CD2 A:TRP741 4.7 16.1 1.0
O14 A:B671 4.8 14.7 1.0
F18 A:B671 4.8 19.6 1.0
O A:HOH101 4.8 11.2 1.0
CG2 A:THR877 4.9 13.7 1.0

Fluorine binding site 8 out of 8 in 3b67

Go back to Fluorine Binding Sites List in 3b67
Fluorine binding site 8 out of 8 in the Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of the Androgen Receptor Ligand Binding Domain in Complex with Sarm C-23 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:16.8
occ:1.00
F21 A:B671 0.0 16.8 1.0
C21 A:B671 1.4 16.1 1.0
C16 A:B671 2.3 15.2 1.0
C20 A:B671 2.4 17.1 1.0
O14 A:B671 2.7 14.7 1.0
F20 A:B671 2.8 16.1 1.0
C13 A:B671 3.0 16.3 1.0
CD1 A:ILE899 3.3 13.1 1.0
CG2 A:THR877 3.4 13.7 1.0
CG1 A:ILE899 3.4 14.9 1.0
CG A:MET895 3.4 26.0 1.0
C17 A:B671 3.6 16.2 1.0
C19 A:B671 3.7 16.7 1.0
SD A:MET895 3.8 23.9 1.0
C18 A:B671 4.1 18.1 1.0
CE A:MET895 4.3 24.2 1.0
CZ3 A:TRP741 4.4 17.9 1.0
CB A:THR877 4.4 13.6 1.0
OG1 A:THR877 4.4 18.1 1.0
CH2 A:TRP741 4.4 18.2 1.0
C11 A:B671 4.5 18.3 1.0
F17 A:B671 4.7 14.8 1.0
F19 A:B671 4.8 20.6 1.0
CB A:MET895 4.8 25.4 1.0
CB A:ILE899 4.9 15.6 1.0
CE A:MET742 5.0 7.0 1.0
O A:MET895 5.0 22.5 1.0

Reference:

C.E.Bohl, Z.Wu, J.Chen, M.L.Mohler, J.Yang, D.J.Hwang, S.Mustafa, D.D.Miller, C.E.Bell, J.T.Dalton. Effect of B-Ring Substitution Pattern on Binding Mode of Propionamide Selective Androgen Receptor Modulators Bioorg.Med.Chem.Lett. V. 18 5567 2008.
ISSN: ISSN 0960-894X
PubMed: 18805694
DOI: 10.1016/J.BMCL.2008.09.002
Page generated: Wed Jul 31 17:13:18 2024

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