Atomistry » Fluorine » PDB 3b0q-3cct » 3bh7
Atomistry »
  Fluorine »
    PDB 3b0q-3cct »
      3bh7 »

Fluorine in PDB 3bh7: Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4

Protein crystallography data

The structure of Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4, PDB code: 3bh7 was solved by S.Veltel, R.Gasper, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.73 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.698, 77.943, 97.918, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 26.2

Other elements in 3bh7:

The structure of Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4 (pdb code 3bh7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4, PDB code: 3bh7:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 3bh7

Go back to Fluorine Binding Sites List in 3bh7
Fluorine binding site 1 out of 4 in the Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3

b:22.5
occ:1.00
F1 A:ALF3 0.0 22.5 1.0
AL A:ALF3 1.8 22.0 1.0
F4 A:ALF3 2.5 23.5 1.0
F3 A:ALF3 2.6 21.7 1.0
O3B A:GDP2 2.6 18.1 1.0
NZ A:LYS30 2.6 17.7 1.0
O A:HOH179 2.8 20.6 1.0
N A:GLY70 2.8 21.4 1.0
CE A:LYS30 3.3 17.4 1.0
CA A:GLY70 3.4 21.2 1.0
PB A:GDP2 3.5 18.9 1.0
CA A:ASP26 3.6 19.9 1.0
F2 A:ALF3 3.6 23.2 1.0
O1B A:GDP2 3.7 18.3 1.0
C A:GLY69 3.7 21.8 1.0
CA A:GLY69 3.8 21.9 1.0
O A:HOH180 3.9 17.8 1.0
O2B A:GDP2 3.9 17.7 1.0
MG A:MG1 4.1 18.2 1.0
O A:ILE68 4.1 21.8 1.0
N A:ASN27 4.1 19.8 1.0
CB A:ASP26 4.2 19.5 1.0
N A:ASP26 4.2 19.6 1.0
OE1 A:GLN71 4.2 20.5 1.0
C A:GLY70 4.2 21.0 1.0
O A:LEU25 4.3 20.0 1.0
C A:ASP26 4.4 19.7 1.0
N A:GLN71 4.5 20.9 1.0
C A:LEU25 4.5 19.6 1.0
CD A:LYS30 4.8 18.4 1.0
CD A:GLN71 4.8 20.9 1.0
O A:GLY69 4.8 22.1 1.0
N A:GLY69 4.9 22.0 1.0
NE2 A:GLN71 4.9 20.5 1.0
C A:ILE68 4.9 21.7 1.0
O3A A:GDP2 5.0 19.4 1.0
O A:GLY24 5.0 19.6 1.0

Fluorine binding site 2 out of 4 in 3bh7

Go back to Fluorine Binding Sites List in 3bh7
Fluorine binding site 2 out of 4 in the Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3

b:23.2
occ:1.00
F2 A:ALF3 0.0 23.2 1.0
AL A:ALF3 1.8 22.0 1.0
F4 A:ALF3 2.5 23.5 1.0
F3 A:ALF3 2.5 21.7 1.0
O3B A:GDP2 2.7 18.1 1.0
NH2 B:ARG118 2.8 7.3 0.6
O A:HOH179 2.8 20.6 1.0
N A:THR48 2.9 21.3 1.0
CA A:PRO47 3.0 21.6 1.0
CB A:PRO47 3.3 21.4 1.0
O A:HOH178 3.3 14.9 1.0
C A:PRO47 3.4 21.5 1.0
NH1 B:ARG118 3.5 9.5 0.6
CZ B:ARG118 3.5 9.3 0.6
F1 A:ALF3 3.6 22.5 1.0
MG A:MG1 3.6 18.2 1.0
PB A:GDP2 3.8 18.9 1.0
O2A A:GDP2 4.0 19.5 1.0
O2B A:GDP2 4.0 17.7 1.0
NE2 A:GLN71 4.1 20.5 1.0
CA A:THR48 4.1 21.4 1.0
OG1 A:THR48 4.2 20.4 1.0
N A:PRO47 4.3 22.1 1.0
CG A:PRO47 4.3 21.9 1.0
O A:THR48 4.3 22.1 1.0
CB A:THR48 4.4 21.0 1.0
O3A A:GDP2 4.4 19.4 1.0
O A:PRO47 4.6 21.2 1.0
O A:THR46 4.6 22.1 1.0
OE1 A:GLN71 4.6 20.5 1.0
C A:THR48 4.7 21.9 1.0
N A:ASN27 4.7 19.8 1.0
NE B:ARG118 4.8 10.9 0.6
CD A:GLN71 4.8 20.9 1.0
PA A:GDP2 4.9 19.2 1.0
C A:THR46 4.9 22.6 1.0

Fluorine binding site 3 out of 4 in 3bh7

Go back to Fluorine Binding Sites List in 3bh7
Fluorine binding site 3 out of 4 in the Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3

b:21.7
occ:1.00
F3 A:ALF3 0.0 21.7 1.0
AL A:ALF3 1.8 22.0 1.0
MG A:MG1 1.8 18.2 1.0
F2 A:ALF3 2.5 23.2 1.0
F1 A:ALF3 2.6 22.5 1.0
O A:HOH180 2.6 17.8 1.0
O3B A:GDP2 2.6 18.1 1.0
OG1 A:THR48 2.7 20.4 1.0
O A:HOH179 2.7 20.6 1.0
O2B A:GDP2 2.7 17.7 1.0
CB A:THR48 3.0 21.0 1.0
O A:HOH178 3.1 14.9 1.0
PB A:GDP2 3.2 18.9 1.0
N A:THR48 3.3 21.3 1.0
F4 A:ALF3 3.5 23.5 1.0
CA A:THR48 3.7 21.4 1.0
OG1 A:THR31 3.8 19.0 1.0
CA A:GLY69 4.1 21.9 1.0
O A:THR48 4.1 22.1 1.0
O1B A:GDP2 4.2 18.3 1.0
CG2 A:THR48 4.3 20.4 1.0
NZ A:LYS30 4.3 17.7 1.0
C A:PRO47 4.4 21.5 1.0
C A:THR48 4.4 21.9 1.0
O A:ILE68 4.5 21.8 1.0
CE A:LYS30 4.5 17.4 1.0
N A:GLY70 4.5 21.4 1.0
O3A A:GDP2 4.5 19.4 1.0
CA A:PRO47 4.7 21.6 1.0
O2A A:GDP2 4.7 19.5 1.0
N A:GLY69 4.8 22.0 1.0
C A:GLY69 4.9 21.8 1.0
NH2 B:ARG118 4.9 7.3 0.6
C A:ILE68 5.0 21.7 1.0
CB A:THR31 5.0 18.5 1.0

Fluorine binding site 4 out of 4 in 3bh7

Go back to Fluorine Binding Sites List in 3bh7
Fluorine binding site 4 out of 4 in the Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the RP2-ARL3 Complex Bound to Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3

b:23.5
occ:1.00
F4 A:ALF3 0.0 23.5 1.0
AL A:ALF3 1.8 22.0 1.0
F2 A:ALF3 2.5 23.2 1.0
F1 A:ALF3 2.5 22.5 1.0
O3B A:GDP2 2.6 18.1 1.0
NH1 B:ARG118 2.7 9.5 0.6
O A:HOH179 2.8 20.6 1.0
NE2 A:GLN71 3.0 20.5 1.0
CB A:ASP26 3.0 19.5 1.0
CA A:ASP26 3.0 19.9 1.0
N A:ASN27 3.1 19.8 1.0
NH2 B:ARG118 3.5 7.3 0.6
CZ B:ARG118 3.5 9.3 0.6
CD A:GLN71 3.5 20.9 1.0
OE1 A:GLN71 3.5 20.5 1.0
C A:ASP26 3.5 19.7 1.0
F3 A:ALF3 3.5 21.7 1.0
PB A:GDP2 4.1 18.9 1.0
CA A:ASN27 4.3 19.6 1.0
N A:ASP26 4.3 19.6 1.0
O A:HOH188 4.4 22.8 1.0
N A:GLY70 4.4 21.4 1.0
CG A:ASP26 4.5 20.8 1.0
N A:GLN71 4.7 20.9 1.0
NZ A:LYS30 4.7 17.7 1.0
O A:ASP26 4.7 20.1 1.0
O1B A:GDP2 4.7 18.3 1.0
CG A:GLN71 4.7 20.9 1.0
NE B:ARG118 4.8 10.9 0.6
O2B A:GDP2 4.9 17.7 1.0
CA A:GLY70 4.9 21.2 1.0
O3A A:GDP2 4.9 19.4 1.0
C A:GLY70 4.9 21.0 1.0
OD2 A:ASP26 4.9 21.6 1.0
N A:THR48 5.0 21.3 1.0
CB A:PRO47 5.0 21.4 1.0
CB A:ASN27 5.0 20.0 1.0

Reference:

S.Veltel, R.Gasper, E.Eisenacher, A.Wittinghofer. The Retinitis Pigmentosa 2 Gene Product Is A Gtpase-Activating Protein For Arf-Like 3 Nat.Struct.Mol.Biol. V. 15 373 2008.
ISSN: ISSN 1545-9993
PubMed: 18376416
DOI: 10.1038/NSMB.1396
Page generated: Sun Dec 13 11:43:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy