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Fluorine in PDB 3cmw: Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures

Protein crystallography data

The structure of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures, PDB code: 3cmw was solved by N.P.Pavletich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 159.000, 300.500, 80.100, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 23.6

Other elements in 3cmw:

The structure of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures also contains other interesting chemical elements:

Magnesium (Mg) 10 atoms
Aluminium (Al) 10 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Fluorine atom in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures (pdb code 3cmw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 40 binding sites of Fluorine where determined in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures, PDB code: 3cmw:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 40 in 3cmw

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Fluorine binding site 1 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:63.8
occ:1.00
F1 A:ALF501 0.0 63.8 1.0
AL A:ALF501 1.8 60.7 1.0
F3 A:ALF501 2.5 60.3 1.0
F4 A:ALF501 2.5 62.0 1.0
O3B A:ADP502 2.7 56.6 1.0
CA A:GLU68 2.9 61.5 1.0
N A:SER69 3.0 62.1 1.0
CB A:GLU68 3.1 62.3 1.0
CD2 A:PHE1217 3.2 52.1 1.0
NZ A:LYS1248 3.4 50.3 1.0
C A:GLU68 3.5 61.6 1.0
F2 A:ALF501 3.5 64.9 1.0
CA A:PHE1217 3.7 55.4 1.0
O A:PHE1217 3.7 57.6 1.0
NZ A:LYS72 3.9 55.4 1.0
CE2 A:PHE1217 4.0 51.8 1.0
CG A:PHE1217 4.0 53.5 1.0
CE A:LYS1248 4.0 49.6 1.0
CB A:PHE1217 4.1 53.9 1.0
PB A:ADP502 4.1 55.8 1.0
C A:PHE1217 4.1 56.5 1.0
N A:GLU68 4.2 59.5 1.0
CA A:SER69 4.2 62.4 1.0
O2B A:ADP502 4.5 54.7 1.0
O A:PRO67 4.5 58.3 1.0
CG A:GLU68 4.5 67.8 1.0
O A:LYS1216 4.6 56.1 1.0
O A:GLU68 4.7 62.3 1.0
N A:PHE1217 4.7 54.6 1.0
C A:PRO67 4.7 58.4 1.0
OG A:SER69 4.9 66.8 1.0
CE A:LYS72 4.9 57.8 1.0
CB A:SER69 5.0 63.2 1.0

Fluorine binding site 2 out of 40 in 3cmw

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Fluorine binding site 2 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:64.9
occ:1.00
F2 A:ALF501 0.0 64.9 1.0
AL A:ALF501 1.8 60.7 1.0
MG A:MG500 2.0 57.2 1.0
F4 A:ALF501 2.5 62.0 1.0
O3B A:ADP502 2.5 56.6 1.0
F3 A:ALF501 2.6 60.3 1.0
O1B A:ADP502 3.0 52.0 1.0
NZ A:LYS1250 3.1 62.2 1.0
OE1 A:GLU96 3.1 69.2 1.0
CE A:LYS1250 3.3 60.9 1.0
PB A:ADP502 3.3 55.8 1.0
F1 A:ALF501 3.5 63.8 1.0
CD A:GLU96 4.1 66.2 1.0
OG1 A:THR73 4.1 60.0 1.0
O2A A:ADP502 4.2 57.0 1.0
OE2 A:GLU96 4.2 67.5 1.0
O A:PHE1217 4.5 57.6 1.0
O2B A:ADP502 4.5 54.7 1.0
O3A A:ADP502 4.5 52.6 1.0
CD A:LYS1250 4.6 56.9 1.0
OD1 A:ASP144 5.0 72.7 1.0
NZ A:LYS72 5.0 55.4 1.0

Fluorine binding site 3 out of 40 in 3cmw

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Fluorine binding site 3 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:60.3
occ:1.00
F3 A:ALF501 0.0 60.3 1.0
AL A:ALF501 1.8 60.7 1.0
F1 A:ALF501 2.5 63.8 1.0
F2 A:ALF501 2.6 64.9 1.0
O3B A:ADP502 2.6 56.6 1.0
NZ A:LYS1248 2.7 50.3 1.0
CE A:LYS1248 3.0 49.6 1.0
CE A:LYS1250 3.3 60.9 1.0
NZ A:LYS1250 3.5 62.2 1.0
O A:PHE1217 3.5 57.6 1.0
F4 A:ALF501 3.6 62.0 1.0
CD A:LYS1250 3.9 56.9 1.0
PB A:ADP502 4.0 55.8 1.0
N A:SER69 4.1 62.1 1.0
OG A:SER69 4.3 66.8 1.0
MG A:MG500 4.3 57.2 1.0
CG A:LYS1250 4.3 57.3 1.0
O1B A:ADP502 4.5 52.0 1.0
O2A A:ADP502 4.5 57.0 1.0
C A:PHE1217 4.5 56.5 1.0
CD A:LYS1248 4.5 49.6 1.0
O3A A:ADP502 4.5 52.6 1.0
CA A:SER69 4.6 62.4 1.0
O A:ALA1219 4.6 57.0 1.0
CA A:PHE1217 4.8 55.4 1.0
CB A:GLU68 5.0 62.3 1.0

Fluorine binding site 4 out of 40 in 3cmw

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Fluorine binding site 4 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:62.0
occ:1.00
F4 A:ALF501 0.0 62.0 1.0
AL A:ALF501 1.8 60.7 1.0
F2 A:ALF501 2.5 64.9 1.0
F1 A:ALF501 2.5 63.8 1.0
O3B A:ADP502 2.7 56.6 1.0
NZ A:LYS72 2.9 55.4 1.0
CE A:LYS72 3.2 57.8 1.0
PB A:ADP502 3.5 55.8 1.0
F3 A:ALF501 3.6 60.3 1.0
CD2 A:PHE1217 3.6 52.1 1.0
MG A:MG500 3.6 57.2 1.0
O1B A:ADP502 3.8 52.0 1.0
O2B A:ADP502 3.8 54.7 1.0
OE2 A:GLU96 3.9 67.5 1.0
OE1 A:GLU96 4.2 69.2 1.0
CE2 A:PHE1217 4.2 51.8 1.0
CD A:GLU96 4.5 66.2 1.0
O A:PHE1217 4.6 57.6 1.0
CG A:PHE1217 4.6 53.5 1.0
CD A:LYS72 4.6 56.0 1.0
N A:SER69 4.7 62.1 1.0
CB A:PHE1217 4.7 53.9 1.0
CA A:GLU68 4.8 61.5 1.0
CG A:GLN194 4.9 56.9 1.0
CA A:PHE1217 5.0 55.4 1.0

Fluorine binding site 5 out of 40 in 3cmw

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Fluorine binding site 5 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:50.9
occ:1.00
F1 A:ALF1501 0.0 50.9 1.0
AL A:ALF1501 1.8 45.9 1.0
O3B A:ADP1502 2.5 46.2 1.0
F3 A:ALF1501 2.5 47.9 1.0
F4 A:ALF1501 2.5 48.7 1.0
CA A:GLU1068 3.1 61.7 1.0
N A:SER1069 3.1 63.7 1.0
CB A:GLU1068 3.3 61.8 1.0
F2 A:ALF1501 3.5 53.5 1.0
NZ A:LYS2248 3.6 45.8 1.0
C A:GLU1068 3.6 62.3 1.0
CD2 A:PHE2217 3.6 53.0 1.0
NZ A:LYS1072 3.9 52.1 1.0
O A:PHE2217 3.9 56.6 1.0
PB A:ADP1502 3.9 45.1 1.0
CE A:LYS2248 4.0 44.6 1.0
CA A:PHE2217 4.1 55.4 1.0
CA A:SER1069 4.2 65.0 1.0
N A:GLU1068 4.3 59.8 1.0
CE2 A:PHE2217 4.3 51.9 1.0
CG A:PHE2217 4.4 54.4 1.0
C A:PHE2217 4.5 54.6 1.0
CB A:PHE2217 4.5 52.9 1.0
O2B A:ADP1502 4.5 43.6 1.0
O A:PRO1067 4.5 59.3 1.0
CG A:GLU1068 4.6 68.6 1.0
O A:GLU1068 4.8 62.9 1.0
O1B A:ADP1502 4.8 43.9 1.0
C A:PRO1067 4.8 58.9 1.0
CE A:LYS1072 4.8 52.8 1.0
O3A A:ADP1502 4.9 42.8 1.0
O A:LYS2216 4.9 58.4 1.0
OG A:SER1069 4.9 68.6 1.0

Fluorine binding site 6 out of 40 in 3cmw

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Fluorine binding site 6 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:53.5
occ:1.00
F2 A:ALF1501 0.0 53.5 1.0
AL A:ALF1501 1.8 45.9 1.0
MG A:MG1500 1.9 47.4 1.0
F3 A:ALF1501 2.5 47.9 1.0
F4 A:ALF1501 2.5 48.7 1.0
O3B A:ADP1502 2.6 46.2 1.0
O1B A:ADP1502 2.9 43.9 1.0
OE1 A:GLU1096 3.0 75.8 1.0
NZ A:LYS2250 3.1 63.8 1.0
CE A:LYS2250 3.1 60.1 1.0
PB A:ADP1502 3.3 45.1 1.0
F1 A:ALF1501 3.5 50.9 1.0
CD A:GLU1096 4.0 67.6 1.0
OG1 A:THR1073 4.0 59.0 1.0
O2A A:ADP1502 4.1 39.2 1.0
OE2 A:GLU1096 4.2 67.1 1.0
O3A A:ADP1502 4.5 42.8 1.0
CD A:LYS2250 4.5 60.8 1.0
O2B A:ADP1502 4.6 43.6 1.0
O A:PHE2217 4.8 56.6 1.0
OD1 A:ASP1144 4.9 77.1 1.0
PA A:ADP1502 5.0 40.3 1.0

Fluorine binding site 7 out of 40 in 3cmw

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Fluorine binding site 7 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:47.9
occ:1.00
F3 A:ALF1501 0.0 47.9 1.0
AL A:ALF1501 1.8 45.9 1.0
F1 A:ALF1501 2.5 50.9 1.0
F2 A:ALF1501 2.5 53.5 1.0
O3B A:ADP1502 2.7 46.2 1.0
NZ A:LYS2248 2.9 45.8 1.0
CE A:LYS2250 3.0 60.1 1.0
NZ A:LYS2250 3.2 63.8 1.0
CE A:LYS2248 3.2 44.6 1.0
F4 A:ALF1501 3.6 48.7 1.0
CD A:LYS2250 3.6 60.8 1.0
O A:PHE2217 3.7 56.6 1.0
CG A:LYS2250 4.0 59.6 1.0
PB A:ADP1502 4.0 45.1 1.0
N A:SER1069 4.3 63.7 1.0
MG A:MG1500 4.3 47.4 1.0
O1B A:ADP1502 4.5 43.9 1.0
O2A A:ADP1502 4.5 39.2 1.0
OG A:SER1069 4.6 68.6 1.0
O3A A:ADP1502 4.6 42.8 1.0
O A:ALA2219 4.7 53.6 1.0
CD A:LYS2248 4.7 46.4 1.0
OE1 A:GLU1096 4.8 75.8 1.0
C A:PHE2217 4.8 54.6 1.0
CA A:SER1069 4.8 65.0 1.0

Fluorine binding site 8 out of 40 in 3cmw

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Fluorine binding site 8 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:48.7
occ:1.00
F4 A:ALF1501 0.0 48.7 1.0
AL A:ALF1501 1.8 45.9 1.0
F1 A:ALF1501 2.5 50.9 1.0
F2 A:ALF1501 2.5 53.5 1.0
O3B A:ADP1502 2.6 46.2 1.0
NZ A:LYS1072 3.0 52.1 1.0
CE A:LYS1072 3.1 52.8 1.0
PB A:ADP1502 3.4 45.1 1.0
MG A:MG1500 3.4 47.4 1.0
F3 A:ALF1501 3.6 47.9 1.0
O1B A:ADP1502 3.6 43.9 1.0
O2B A:ADP1502 3.8 43.6 1.0
OE2 A:GLU1096 3.9 67.1 1.0
CD2 A:PHE2217 4.0 53.0 1.0
OE1 A:GLU1096 4.1 75.8 1.0
CD A:GLU1096 4.4 67.6 1.0
CD A:LYS1072 4.6 56.7 1.0
CE2 A:PHE2217 4.6 51.9 1.0
N A:SER1069 4.8 63.7 1.0
O A:PHE2217 4.9 56.6 1.0
CG A:GLN1194 4.9 55.3 1.0
O3A A:ADP1502 4.9 42.8 1.0
CA A:GLU1068 4.9 61.7 1.0

Fluorine binding site 9 out of 40 in 3cmw

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Fluorine binding site 9 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2501

b:45.3
occ:1.00
F1 A:ALF2501 0.0 45.3 1.0
AL A:ALF2501 1.8 40.4 1.0
O3B A:ADP2502 2.5 42.4 1.0
F4 A:ALF2501 2.5 45.6 1.0
F3 A:ALF2501 2.5 44.5 1.0
CA A:GLU2068 2.9 61.0 1.0
N A:SER2069 3.0 62.4 1.0
CB A:GLU2068 3.2 62.4 1.0
CD2 A:PHE3217 3.2 52.1 1.0
C A:GLU2068 3.5 62.1 1.0
F2 A:ALF2501 3.5 48.0 1.0
NZ A:LYS2072 3.7 53.3 1.0
NZ A:LYS3248 3.7 44.8 1.0
PB A:ADP2502 3.9 41.6 1.0
CE2 A:PHE3217 3.9 52.4 1.0
CA A:PHE3217 4.0 55.4 1.0
O A:PHE3217 4.0 58.2 1.0
N A:GLU2068 4.1 58.5 1.0
CG A:PHE3217 4.1 51.9 1.0
CA A:SER2069 4.2 63.1 1.0
CE A:LYS3248 4.2 44.0 1.0
O2B A:ADP2502 4.3 43.2 1.0
CB A:PHE3217 4.3 53.3 1.0
O A:PRO2067 4.4 59.1 1.0
C A:PHE3217 4.5 56.0 1.0
CG A:GLU2068 4.6 69.1 1.0
C A:PRO2067 4.6 58.3 1.0
CE A:LYS2072 4.7 55.6 1.0
O A:GLU2068 4.7 62.8 1.0
O1B A:ADP2502 4.8 41.0 1.0
O3A A:ADP2502 4.8 38.1 1.0
O A:LYS3216 4.9 60.6 1.0
OG A:SER2069 5.0 67.2 1.0

Fluorine binding site 10 out of 40 in 3cmw

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Fluorine binding site 10 out of 40 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2501

b:48.0
occ:1.00
F2 A:ALF2501 0.0 48.0 1.0
AL A:ALF2501 1.8 40.4 1.0
MG A:MG2500 2.0 42.2 1.0
F3 A:ALF2501 2.5 44.5 1.0
F4 A:ALF2501 2.5 45.6 1.0
O3B A:ADP2502 2.6 42.4 1.0
O1B A:ADP2502 3.0 41.0 1.0
OE1 A:GLU2096 3.0 70.5 1.0
NZ A:LYS3250 3.3 64.9 1.0
CE A:LYS3250 3.4 60.4 1.0
PB A:ADP2502 3.4 41.6 1.0
F1 A:ALF2501 3.5 45.3 1.0
CD A:GLU2096 4.0 66.0 1.0
OG1 A:THR2073 4.1 57.1 1.0
OE2 A:GLU2096 4.1 66.8 1.0
O2A A:ADP2502 4.2 40.0 1.0
O3A A:ADP2502 4.5 38.1 1.0
O A:PHE3217 4.6 58.2 1.0
O2B A:ADP2502 4.6 43.2 1.0
CD A:LYS3250 4.7 59.2 1.0
OD1 A:ASP2144 4.9 80.1 1.0

Reference:

Z.Chen, H.Yang, N.P.Pavletich. Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures. Nature V. 453 489 2008.
ISSN: ISSN 0028-0836
PubMed: 18497818
DOI: 10.1038/NATURE06971
Page generated: Wed Jul 31 17:32:59 2024

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