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Fluorine in PDB 3ef0: The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase

Enzymatic activity of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase

All present enzymatic activity of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase:
3.1.3.16;

Protein crystallography data

The structure of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase, PDB code: 3ef0 was solved by A.Ghosh, C.D.Lima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.169, 80.682, 89.342, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 25.2

Other elements in 3ef0:

The structure of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase (pdb code 3ef0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase, PDB code: 3ef0:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 3ef0

Go back to Fluorine Binding Sites List in 3ef0
Fluorine binding site 1 out of 4 in the The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:20.6
occ:1.00
 F1 A:ALF600 0.0 20.6 1.0
AL A:ALF600 1.8 24.9 1.0
MG A:MG1 2.3 20.3 1.0
F4 A:ALF600 2.4 21.5 1.0
O A:HOH603 2.5 0.4 1.0
F3 A:ALF600 2.6 21.0 1.0
OD2 A:ASP170 2.6 27.5 1.0
OD1 A:ASP170 2.8 19.0 1.0
CB A:ASP172 3.0 17.0 1.0
CG A:ASP170 3.1 22.0 1.0
O A:ASP172 3.1 13.4 1.0
O A:HOH602 3.2 19.2 1.0
N A:ASP172 3.2 16.6 1.0
O A:HOH601 3.3 12.1 1.0
OD2 A:ASP172 3.3 20.8 1.0
CA A:ASP172 3.4 16.2 1.0
F2 A:ALF600 3.5 19.6 1.0
CG A:ASP172 3.6 20.2 1.0
OD1 A:ASP323 3.6 30.9 1.0
C A:ASP172 3.7 15.6 1.0
O A:HOH637 4.0 34.2 1.0
C A:LEU171 4.1 17.1 1.0
N A:LEU171 4.2 13.8 1.0
CG A:ASP323 4.3 28.9 1.0
OD1 A:ASP298 4.5 15.6 1.0
OD2 A:ASP323 4.5 27.4 1.0
CB A:ASP170 4.6 18.6 1.0
CA A:LEU171 4.7 14.9 1.0
NH1 A:ARG299 4.7 26.9 1.0
OD1 A:ASP172 4.8 21.2 1.0
OG1 A:THR243 4.9 13.2 1.0
O A:LEU171 4.9 16.9 1.0
C A:ASP170 5.0 18.0 1.0

Fluorine binding site 2 out of 4 in 3ef0

Go back to Fluorine Binding Sites List in 3ef0
Fluorine binding site 2 out of 4 in the The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:19.6
occ:1.00
 F2 A:ALF600 0.0 19.6 1.0
AL A:ALF600 1.8 24.9 1.0
OD2 A:ASP170 2.5 27.5 1.0
F3 A:ALF600 2.5 21.0 1.0
N A:MET244 2.6 16.7 1.0
F4 A:ALF600 2.6 21.5 1.0
NZ A:LYS280 2.9 12.6 1.0
CA A:THR243 2.9 14.3 1.0
O A:HOH603 2.9 0.4 1.0
C A:THR243 3.1 15.4 1.0
CE A:LYS280 3.1 16.1 1.0
OG1 A:THR243 3.2 13.2 1.0
CG A:MET244 3.5 29.2 1.0
F1 A:ALF600 3.5 20.6 1.0
CB A:MET244 3.6 21.3 1.0
CB A:THR243 3.6 14.8 1.0
CA A:MET244 3.6 19.1 1.0
O A:TYR242 3.7 15.4 1.0
CG A:ASP170 3.7 22.0 1.0
N A:THR243 4.0 14.0 1.0
C A:TYR242 4.3 16.0 1.0
O A:THR243 4.3 14.5 1.0
CB A:ASP170 4.5 18.6 1.0
OD1 A:ASP170 4.6 19.0 1.0
CE A:MET244 4.6 38.6 1.0
N A:GLY245 4.6 18.5 1.0
O A:HOH637 4.6 34.2 1.0
C A:MET244 4.6 19.5 1.0
CD A:LYS280 4.6 17.8 1.0
N A:LEU171 4.7 13.8 1.0
O A:HOH601 4.7 12.1 1.0
CA A:ASP170 4.8 17.8 1.0
SD A:MET244 4.9 36.2 1.0
OD2 A:ASP172 4.9 20.8 1.0
CG2 A:THR243 5.0 14.5 1.0

Fluorine binding site 3 out of 4 in 3ef0

Go back to Fluorine Binding Sites List in 3ef0
Fluorine binding site 3 out of 4 in the The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:21.0
occ:1.00
 F3 A:ALF600 0.0 21.0 1.0
AL A:ALF600 1.8 24.9 1.0
F2 A:ALF600 2.5 19.6 1.0
F1 A:ALF600 2.6 20.6 1.0
O A:HOH601 2.6 12.1 1.0
OD2 A:ASP170 2.7 27.5 1.0
O A:HOH603 2.9 0.4 1.0
NH1 A:ARG299 3.0 26.9 1.0
O A:HOH637 3.3 34.2 1.0
NZ A:LYS280 3.4 12.6 1.0
MG A:MG1 3.6 20.3 1.0
CG A:ASP170 3.6 22.0 1.0
F4 A:ALF600 3.6 21.5 1.0
CG A:MET244 3.7 29.2 1.0
CE A:LYS280 3.8 16.1 1.0
OD1 A:ASP170 3.9 19.0 1.0
CB A:MET244 4.2 21.3 1.0
O A:HOH602 4.2 19.2 1.0
CZ A:ARG299 4.2 29.4 1.0
OD1 A:ASP323 4.3 30.9 1.0
OD2 A:ASP297 4.4 17.3 1.0
CD A:ARG299 4.5 26.2 1.0
N A:MET244 4.5 16.7 1.0
OD1 A:ASP297 4.6 18.0 1.0
CB A:ASP170 4.7 18.6 1.0
NE A:ARG299 4.8 27.4 1.0
CG A:ASP297 5.0 17.7 1.0

Fluorine binding site 4 out of 4 in 3ef0

Go back to Fluorine Binding Sites List in 3ef0
Fluorine binding site 4 out of 4 in the The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F600

b:21.5
occ:1.00
 F4 A:ALF600 0.0 21.5 1.0
AL A:ALF600 1.8 24.9 1.0
F1 A:ALF600 2.4 20.6 1.0
OD2 A:ASP170 2.4 27.5 1.0
F2 A:ALF600 2.6 19.6 1.0
O A:HOH603 2.7 0.4 1.0
OG1 A:THR243 2.7 13.2 1.0
N A:LEU171 2.9 13.8 1.0
N A:ASP172 3.1 16.6 1.0
OD2 A:ASP172 3.1 20.8 1.0
CG A:ASP170 3.2 22.0 1.0
CB A:THR243 3.5 14.8 1.0
CA A:LEU171 3.5 14.9 1.0
CB A:LEU171 3.5 11.4 1.0
F3 A:ALF600 3.6 21.0 1.0
OD1 A:ASP170 3.6 19.0 1.0
C A:LEU171 3.7 17.1 1.0
CG A:ASP172 3.7 20.2 1.0
CA A:THR243 3.9 14.3 1.0
CB A:ASP172 4.0 17.0 1.0
C A:ASP170 4.0 18.0 1.0
CA A:ASP172 4.1 16.2 1.0
N A:MET244 4.1 16.7 1.0
CG A:LEU171 4.3 14.7 1.0
MG A:MG1 4.3 20.3 1.0
CA A:ASP170 4.3 17.8 1.0
CB A:ASP170 4.4 18.6 1.0
C A:THR243 4.6 15.4 1.0
NZ A:LYS280 4.6 12.6 1.0
OD1 A:ASP172 4.6 21.2 1.0
O A:ASP172 4.7 13.4 1.0
O A:TYR242 4.8 15.4 1.0
O A:LEU171 4.9 16.9 1.0
CG2 A:THR243 4.9 14.5 1.0
CD1 A:LEU171 4.9 13.2 1.0
C A:ASP172 4.9 15.6 1.0

Reference:

A.Ghosh, S.Shuman, C.D.Lima. The Structure of FCP1, An Essential Rna Polymerase II Ctd Phosphatase. Mol.Cell V. 32 478 2008.
ISSN: ISSN 1097-2765
PubMed: 19026779
DOI: 10.1016/J.MOLCEL.2008.09.021
Page generated: Wed Jul 31 18:15:00 2024

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