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Fluorine in PDB 3f5e: Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3

Protein crystallography data

The structure of Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3, PDB code: 3f5e was solved by J.A.Garnett, Y.Liu, T.Feizi, S.J.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.66 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 66.325, 66.325, 172.091, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 20.3

Other elements in 3f5e:

The structure of Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3 (pdb code 3f5e). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3, PDB code: 3f5e:

Fluorine binding site 1 out of 1 in 3f5e

Go back to Fluorine Binding Sites List in 3f5e
Fluorine binding site 1 out of 1 in the Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Toxoplasma Gondii Micronemal Protein 1 Bound to 2'F-3'SIALACNAC1-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:46.5
occ:1.00
F2 A:2FG402 0.0 46.5 1.0
C2 A:2FG402 1.4 47.6 1.0
C1 A:2FG402 2.4 50.8 1.0
C3 A:2FG402 2.5 44.5 1.0
O3 A:NAG403 2.8 56.1 1.0
O3 A:2FG402 2.9 38.4 1.0
O A:HOH1170 3.0 48.8 1.0
O7 A:NAG403 3.1 60.7 1.0
O6 A:SIA401 3.2 34.7 1.0
C7 A:NAG403 3.2 61.1 1.0
C8 A:NAG403 3.6 61.2 1.0
C2 A:SIA401 3.6 35.0 1.0
O5 A:2FG402 3.7 50.7 1.0
N2 A:NAG403 3.7 61.0 1.0
C4 A:2FG402 3.8 46.1 1.0
C3 A:NAG403 4.0 59.2 1.0
C5 A:2FG402 4.2 48.5 1.0
C8 A:SIA401 4.2 39.7 1.0
O7 A:SIA401 4.2 38.1 1.0
C2 A:NAG403 4.3 60.6 1.0
O4 A:2FG402 4.4 45.0 1.0
C6 A:SIA401 4.4 35.1 1.0
C7 A:SIA401 4.5 37.5 1.0
C3 A:SIA401 4.7 33.5 1.0
C1 A:SIA401 4.7 31.3 1.0
O8 A:SIA401 4.7 39.1 1.0
O1A A:SIA401 4.9 29.1 1.0

Reference:

J.A.Garnett, Y.Liu, E.Leon, S.A.Allman, N.Friedrich, S.Saouros, S.Curry, D.Soldati-Favre, B.G.Davis, T.Feizi, S.Matthews. Detailed Insights From Microarray and Crystallographic Studies Into Carbohydrate Recognition By Microneme Protein 1 (MIC1) of Toxoplasma Gondii. Protein Sci. V. 18 1935 2009.
ISSN: ISSN 0961-8368
PubMed: 19593815
DOI: 10.1002/PRO.204
Page generated: Sun Dec 13 11:45:47 2020

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