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Fluorine in PDB 3hke: Tubulin-T138067: RB3 Stathmin-Like Domain Complex

Protein crystallography data

The structure of Tubulin-T138067: RB3 Stathmin-Like Domain Complex, PDB code: 3hke was solved by A.Dorleans, B.Gigant, R.B.G.Ravelli, P.Mailliet, V.Mikol, M.Knossow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.60
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 326.710, 326.710, 54.120, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 25.3

Other elements in 3hke:

The structure of Tubulin-T138067: RB3 Stathmin-Like Domain Complex also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Fluorine atom in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex (pdb code 3hke). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 22 binding sites of Fluorine where determined in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex, PDB code: 3hke:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 1 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1241

b:0.0
occ:0.00
 FAD B:T131241 0.0 0.0 0.0
CAP B:T131241 1.3 0.0 0.0
CAV B:T131241 2.3 0.0 0.0
CAL B:T131241 2.4 0.0 0.0
O A:SER178 2.4 67.3 1.0
OAN B:T131241 2.6 0.0 0.0
N A:SER178 2.7 67.5 1.0
C A:SER178 3.3 67.2 1.0
O A:GLN176 3.4 67.9 1.0
C A:VAL177 3.4 67.9 1.0
CAA B:T131241 3.4 0.0 0.0
CA A:VAL177 3.5 67.8 1.0
CAK B:T131241 3.6 0.0 0.0
CA A:SER178 3.7 67.1 1.0
CAO B:T131241 3.7 0.0 0.0
CG1 A:VAL177 3.9 67.6 1.0
CAJ B:T131241 4.2 0.0 0.0
C A:GLN176 4.3 67.8 1.0
CB A:VAL177 4.3 67.8 1.0
N A:VAL177 4.4 67.5 1.0
O A:VAL177 4.5 68.2 1.0
N A:THR179 4.5 67.1 1.0
CB A:SER178 4.7 66.9 1.0
OH A:TYR224 4.7 71.4 1.0
NAM B:T131241 4.8 68.9 0.7

Fluorine binding site 2 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 2 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1241

b:68.2
occ:0.70
 FAH B:T131241 0.0 68.2 0.7
CAT B:T131241 1.3 69.0 0.7
CAR B:T131241 2.4 68.9 0.7
CAW B:T131241 2.4 69.6 0.7
OAC B:T131241 2.4 69.5 0.7
FAF B:T131241 2.7 68.1 0.7
SAX B:T131241 2.9 69.6 0.7
O B:VAL355 3.1 65.0 1.0
CB B:GLN247 3.5 68.1 1.0
CAQ B:T131241 3.6 69.1 0.7
CAU B:T131241 3.7 69.8 0.7
O B:GLN247 3.8 68.1 1.0
NAM B:T131241 3.9 68.9 0.7
NE2 B:GLN247 4.0 67.5 1.0
CAS B:T131241 4.1 69.5 0.7
OAB B:T131241 4.2 70.0 0.7
C B:VAL355 4.2 64.9 1.0
CG B:GLN247 4.2 67.9 1.0
CB B:ALA354 4.3 65.1 1.0
N B:VAL355 4.3 65.3 1.0
CG B:PRO245 4.3 66.9 1.0
CB B:PRO245 4.3 66.9 1.0
CD B:GLN247 4.6 68.2 1.0
C B:GLN247 4.6 68.2 1.0
CA B:GLN247 4.7 68.1 1.0
FAI B:T131241 4.8 70.0 0.7
CA B:VAL355 4.9 65.0 1.0
CAO B:T131241 5.0 0.0 0.0
CA B:ALA354 5.0 65.2 1.0

Fluorine binding site 3 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 3 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1241

b:68.1
occ:0.70
 FAF B:T131241 0.0 68.1 0.7
CAR B:T131241 1.4 68.9 0.7
CAT B:T131241 2.4 69.0 0.7
CAQ B:T131241 2.4 69.1 0.7
FAH B:T131241 2.7 68.2 0.7
SG B:CYS241 2.9 69.7 1.0
O B:VAL355 3.4 65.0 1.0
CG B:PRO245 3.6 66.9 1.0
CAW B:T131241 3.6 69.6 0.7
CAS B:T131241 3.7 69.5 0.7
CB B:CYS356 3.9 65.0 1.0
C B:VAL355 4.0 64.9 1.0
CB B:PRO245 4.1 66.9 1.0
CAU B:T131241 4.1 69.8 0.7
CD B:PRO245 4.3 67.1 1.0
CB B:ALA354 4.4 65.1 1.0
N B:CYS356 4.4 64.8 1.0
CA B:CYS356 4.4 64.9 1.0
CB B:CYS241 4.7 66.8 1.0
N B:VAL355 4.7 65.3 1.0
FAG B:T131241 4.8 69.5 0.7
O B:GLN247 4.8 68.1 1.0

Fluorine binding site 4 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 4 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1241

b:69.5
occ:0.70
 FAG B:T131241 0.0 69.5 0.7
CAS B:T131241 1.3 69.5 0.7
CAU B:T131241 2.3 69.8 0.7
CAQ B:T131241 2.4 69.1 0.7
FAI B:T131241 2.6 70.0 0.7
CAR B:T13700 3.1 75.9 0.8
CB B:CYS241 3.2 66.8 1.0
SG B:CYS241 3.3 69.7 1.0
CAQ B:T13700 3.3 76.3 0.8
CAT B:T13700 3.3 75.5 0.8
CAS B:T13700 3.6 75.5 0.8
CAW B:T13700 3.6 73.8 0.8
FAF B:T13700 3.6 75.2 0.8
CAW B:T131241 3.6 69.6 0.7
CAR B:T131241 3.7 68.9 0.7
CAU B:T13700 3.7 74.4 0.8
FAE B:T13700 3.9 77.9 0.8
FAH B:T13700 3.9 76.6 0.8
CB B:ALA250 4.1 66.7 1.0
CAT B:T131241 4.1 69.0 0.7
O B:GLN247 4.2 68.1 1.0
FAG B:T13700 4.4 75.8 0.8
OAC B:T13700 4.5 70.8 0.8
CA B:CYS241 4.5 66.5 1.0
FAI B:T13700 4.7 74.3 0.8
N B:ALA250 4.7 67.0 1.0
O B:CYS241 4.7 65.8 1.0
SAX B:T13700 4.7 71.6 0.8
CB B:ALA354 4.7 65.1 1.0
FAF B:T131241 4.8 68.1 0.7
CA B:ALA250 4.8 66.8 1.0

Fluorine binding site 5 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 5 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1241

b:70.0
occ:0.70
 FAI B:T131241 0.0 70.0 0.7
CAU B:T131241 1.4 69.8 0.7
CAS B:T131241 2.3 69.5 0.7
CAW B:T131241 2.4 69.6 0.7
FAG B:T131241 2.6 69.5 0.7
O B:GLN247 3.0 68.1 1.0
SAX B:T131241 3.2 69.6 0.7
OAB B:T131241 3.3 70.0 0.7
FAF B:T13700 3.5 75.2 0.8
NAM B:T131241 3.6 68.9 0.7
FAH B:T13700 3.6 76.6 0.8
CAQ B:T131241 3.6 69.1 0.7
CAT B:T131241 3.7 69.0 0.7
CAR B:T13700 3.8 75.9 0.8
C B:GLN247 3.9 68.2 1.0
CAT B:T13700 3.9 75.5 0.8
N B:LEU248 4.1 68.2 1.0
CAR B:T131241 4.1 68.9 0.7
CAO B:T131241 4.5 0.0 0.0
OAC B:T131241 4.6 69.5 0.7
CB B:ALA354 4.7 65.1 1.0
CAL B:T131241 4.7 0.0 0.0
CAQ B:T13700 4.7 76.3 0.8
CAW B:T13700 4.8 73.8 0.8
FAH B:T131241 4.8 68.2 0.7
O B:LEU248 4.9 68.4 1.0

Fluorine binding site 6 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 6 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F700

b:62.6
occ:0.80
 FAD B:T13700 0.0 62.6 0.8
CAP B:T13700 1.3 63.9 0.8
CAV B:T13700 2.3 63.9 0.8
CAL B:T13700 2.4 65.3 0.8
OAN B:T13700 2.6 63.1 0.8
CG B:LYS352 2.7 67.2 1.0
CB B:LYS352 3.3 66.3 1.0
O A:THR179 3.4 66.9 1.0
CG2 A:VAL181 3.4 64.2 1.0
CAA B:T13700 3.5 63.4 0.8
CAK B:T13700 3.6 64.7 0.8
CAO B:T13700 3.7 66.4 0.8
CD B:LYS352 3.9 67.9 1.0
ND2 B:ASN258 4.0 64.7 1.0
NZ B:LYS352 4.1 66.2 1.0
N A:VAL181 4.1 64.9 1.0
CAJ B:T13700 4.2 64.8 0.8
CG B:ASN258 4.2 64.5 1.0
CA A:ALA180 4.4 65.5 1.0
C A:ALA180 4.4 65.1 1.0
C A:THR179 4.4 66.6 1.0
CB A:VAL181 4.5 64.1 1.0
CE B:LYS352 4.6 67.4 1.0
OD1 B:ASN258 4.6 63.9 1.0
CB B:ASN258 4.6 64.8 1.0
CA B:LYS352 4.7 66.1 1.0
CA A:VAL181 4.7 64.5 1.0
N A:ALA180 4.8 66.1 1.0
NAM B:T13700 4.8 69.0 0.8
N B:LYS352 4.8 66.1 1.0
FAH B:T13700 4.9 76.6 0.8

Fluorine binding site 7 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 7 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F700

b:76.6
occ:0.80
 FAH B:T13700 0.0 76.6 0.8
CAT B:T13700 1.4 75.5 0.8
CAR B:T13700 2.3 75.9 0.8
CAW B:T13700 2.4 73.8 0.8
FAF B:T13700 2.6 75.2 0.8
SAX B:T13700 3.1 71.6 0.8
OAC B:T13700 3.2 70.8 0.8
NAM B:T13700 3.4 69.0 0.8
CAO B:T13700 3.4 66.4 0.8
CAL B:T13700 3.5 65.3 0.8
FAI B:T131241 3.6 70.0 0.7
CAQ B:T13700 3.6 76.3 0.8
CAU B:T13700 3.7 74.4 0.8
FAG B:T131241 3.9 69.5 0.7
O A:THR179 4.2 66.9 1.0
CAS B:T13700 4.2 75.5 0.8
CAJ B:T13700 4.2 64.8 0.8
CAP B:T13700 4.2 63.9 0.8
OAB B:T13700 4.5 71.6 0.8
CAU B:T131241 4.6 69.8 0.7
FAE B:T13700 4.7 77.9 0.8
CAS B:T131241 4.7 69.5 0.7
FAI B:T13700 4.8 74.3 0.8
CAK B:T13700 4.8 64.7 0.8
CAV B:T13700 4.8 63.9 0.8
FAD B:T13700 4.9 62.6 0.8

Fluorine binding site 8 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 8 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F700

b:75.2
occ:0.80
 FAF B:T13700 0.0 75.2 0.8
CAR B:T13700 1.4 75.9 0.8
CAT B:T13700 2.3 75.5 0.8
CAQ B:T13700 2.4 76.3 0.8
FAH B:T13700 2.6 76.6 0.8
FAE B:T13700 2.8 77.9 0.8
FAI B:T131241 3.5 70.0 0.7
CB B:ALA354 3.5 65.1 1.0
FAG B:T131241 3.6 69.5 0.7
CAW B:T13700 3.6 73.8 0.8
CAS B:T13700 3.7 75.5 0.8
CAU B:T131241 3.8 69.8 0.7
CAS B:T131241 3.9 69.5 0.7
CAU B:T13700 4.2 74.4 0.8
N B:ALA354 4.4 64.8 1.0
C B:THR353 4.4 64.8 1.0
CA B:ALA354 4.5 65.2 1.0
CB B:LYS352 4.5 66.3 1.0
O B:THR353 4.5 64.6 1.0
CAW B:T131241 4.7 69.6 0.7
CAQ B:T131241 4.8 69.1 0.7
O B:LYS352 4.8 65.8 1.0
C B:LYS352 4.8 65.8 1.0
NAM B:T131241 4.8 68.9 0.7
FAG B:T13700 4.8 75.8 0.8
N B:THR353 4.9 65.3 1.0

Fluorine binding site 9 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 9 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F700

b:77.9
occ:0.80
 FAE B:T13700 0.0 77.9 0.8
CAQ B:T13700 1.3 76.3 0.8
CAS B:T13700 2.4 75.5 0.8
CAR B:T13700 2.4 75.9 0.8
FAG B:T13700 2.8 75.8 0.8
FAF B:T13700 2.8 75.2 0.8
CB B:ALA354 3.5 65.1 1.0
CAU B:T13700 3.6 74.4 0.8
CAT B:T13700 3.6 75.5 0.8
FAG B:T131241 3.9 69.5 0.7
CB B:VAL318 3.9 65.5 1.0
CAW B:T13700 4.1 73.8 0.8
CAS B:T131241 4.1 69.5 0.7
O B:ALA317 4.2 65.3 1.0
N B:ALA354 4.3 64.8 1.0
CAQ B:T131241 4.3 69.1 0.7
SG B:CYS241 4.4 69.7 1.0
CB B:CYS241 4.4 66.8 1.0
CG1 B:VAL318 4.4 65.3 1.0
CA B:ALA354 4.5 65.2 1.0
C B:ALA317 4.7 65.4 1.0
CG2 B:VAL318 4.7 66.0 1.0
CA B:VAL318 4.7 65.5 1.0
FAI B:T13700 4.7 74.3 0.8
FAH B:T13700 4.7 76.6 0.8
CAU B:T131241 4.9 69.8 0.7
CB B:ALA316 4.9 65.3 1.0
O B:LYS352 5.0 65.8 1.0
C B:THR353 5.0 64.8 1.0
N B:VAL318 5.0 65.5 1.0

Fluorine binding site 10 out of 22 in 3hke

Go back to Fluorine Binding Sites List in 3hke
Fluorine binding site 10 out of 22 in the Tubulin-T138067: RB3 Stathmin-Like Domain Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Tubulin-T138067: RB3 Stathmin-Like Domain Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F700

b:75.8
occ:0.80
 FAG B:T13700 0.0 75.8 0.8
CAS B:T13700 1.4 75.5 0.8
CAU B:T13700 2.4 74.4 0.8
CAQ B:T13700 2.4 76.3 0.8
FAI B:T13700 2.7 74.3 0.8
FAE B:T13700 2.8 77.9 0.8
CB B:CYS241 3.6 66.8 1.0
CAW B:T13700 3.7 73.8 0.8
CAR B:T13700 3.7 75.9 0.8
CAT B:T13700 4.2 75.5 0.8
FAG B:T131241 4.4 69.5 0.7
CB B:ALA316 4.5 65.3 1.0
CG1 B:VAL318 4.6 65.3 1.0
CD1 B:ILE378 4.7 65.8 1.0
SG B:CYS241 4.7 69.7 1.0
CD2 B:LEU255 4.7 66.1 1.0
CA B:CYS241 4.8 66.5 1.0
FAF B:T13700 4.8 75.2 0.8
OAB B:T13700 4.9 71.6 0.8
CB B:VAL318 4.9 65.5 1.0
O B:VAL238 5.0 65.8 1.0

Reference:

A.Dorleans, B.Gigant, R.B.G.Ravelli, P.Mailliet, V.Mikol, M.Knossow. Variations in the Colchicine-Binding Domain Provide Insight Into the Structural Switch of Tubulin Proc.Natl.Acad.Sci.Usa V. 106 13775 2009.
ISSN: ISSN 0027-8424
PubMed: 19666559
DOI: 10.1073/PNAS.0904223106
Page generated: Wed Jul 31 19:16:06 2024

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