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Fluorine in PDB 3hmi: The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide

Enzymatic activity of The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide

All present enzymatic activity of The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide:
2.7.10.2;

Protein crystallography data

The structure of The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide, PDB code: 3hmi was solved by E.Ugochukwu, E.Salah, A.Barr, P.Mahajan, B.Shrestha, P.Savitsky, A.Chaikuad, C.Allerston, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, S.Knapp, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.72 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 165.920, 39.800, 43.130, 90.00, 95.69, 90.00
R / Rfree (%) 18.8 / 23.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide (pdb code 3hmi). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide, PDB code: 3hmi:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 3hmi

Go back to Fluorine Binding Sites List in 3hmi
Fluorine binding site 1 out of 2 in the The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:15.6
occ:1.00
FAF A:DKI1 0.0 15.6 1.0
CAU A:DKI1 1.3 14.6 1.0
CAZ A:DKI1 2.3 14.7 1.0
CAI A:DKI1 2.4 16.4 1.0
NAQ A:DKI1 2.6 12.8 1.0
CAS A:DKI1 3.3 15.2 1.0
CG1 A:VAL302 3.4 10.0 1.0
CE2 A:PHE428 3.4 9.0 1.0
SAE A:DKI1 3.4 15.1 1.0
CD2 A:LEU294 3.6 10.6 1.0
CAV A:DKI1 3.6 14.1 1.0
CD2 A:PHE428 3.7 8.6 1.0
CAH A:DKI1 3.7 18.3 1.0
CG2 A:VAL302 3.7 8.9 1.0
CB A:VAL302 3.9 8.0 1.0
CB A:TYR299 3.9 7.4 1.0
CG A:TYR299 4.0 6.8 1.0
CAJ A:DKI1 4.1 17.3 1.0
CD2 A:TYR299 4.2 6.6 1.0
NBA A:DKI1 4.2 15.5 1.0
CD1 A:TYR299 4.6 2.0 1.0
CZ A:PHE428 4.6 9.2 1.0
FAG A:DKI1 4.7 15.1 1.0
NAP A:DKI1 4.8 12.8 1.0
CG A:LEU294 4.9 7.4 1.0
CE2 A:TYR299 4.9 6.7 1.0
CG A:PHE428 5.0 9.0 1.0

Fluorine binding site 2 out of 2 in 3hmi

Go back to Fluorine Binding Sites List in 3hmi
Fluorine binding site 2 out of 2 in the The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1H-1,2,4- Triazole-1-Carbothioamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:15.1
occ:1.00
FAG A:DKI1 0.0 15.1 1.0
CAV A:DKI1 1.3 14.1 1.0
CAZ A:DKI1 2.4 14.7 1.0
CAJ A:DKI1 2.4 17.3 1.0
NAQ A:DKI1 2.8 12.8 1.0
CE1 A:TYR299 3.4 6.7 1.0
CD2 A:LEU416 3.4 11.4 1.0
CAS A:DKI1 3.4 15.2 1.0
CZ A:TYR299 3.5 4.4 1.0
CB A:ALA426 3.5 8.3 1.0
CA A:ASN414 3.5 6.4 1.0
CAU A:DKI1 3.6 14.6 1.0
OH A:TYR299 3.6 4.5 1.0
CAH A:DKI1 3.6 18.3 1.0
O A:ARG413 3.7 8.6 1.0
CD1 A:LEU416 3.7 9.4 1.0
C A:ASN414 3.8 7.2 1.0
O A:ASN414 3.9 7.4 1.0
OD1 A:ASN414 4.0 9.6 1.0
CD1 A:TYR299 4.0 2.0 1.0
CAI A:DKI1 4.1 16.4 1.0
CG A:LEU416 4.2 9.5 1.0
CE2 A:TYR299 4.2 6.7 1.0
CB A:ASN414 4.3 7.5 1.0
SAE A:DKI1 4.3 15.1 1.0
N A:ASN414 4.5 7.9 1.0
C A:ARG413 4.5 8.7 1.0
N A:CYS415 4.5 6.6 1.0
NBA A:DKI1 4.5 15.5 1.0
CG A:ASN414 4.6 6.3 1.0
NAP A:DKI1 4.6 12.8 1.0
FAF A:DKI1 4.7 15.6 1.0
CG A:TYR299 4.7 6.8 1.0
CD2 A:TYR299 4.8 6.6 1.0
CA A:ALA426 4.8 7.7 1.0

Reference:

E.Ugochukwu, E.Salah, A.Barr, P.Mahajan, B.Shrestha, P.Savitsky, A.Chaikuad, C.Allerston, F.Von Delft, S.Knapp. The Crystal Structure of Human ABL2 in Complex with 5-Amino-3-{[4-(Aminosulfonyl)Phenyl]Amino}-N-(2, 6-Difluorophenyl)-1H-1,2,4-Triazole-1-Carbothioamide To Be Published.
Page generated: Wed Jul 31 19:21:39 2024

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