Fluorine in PDB 3hvn: Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis

The structure of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis, PDB code: 3hvn was solved by L.Xu, B.Huang, H.Du, C.X.Zhang, J.Xu, X.Li, Z.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.41 / 2.85
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	95.720, 95.720, 117.046, 90.00, 90.00, 120.00
R / Rfree (%)	27.9 / 29.4

The binding sites of Fluorine atom in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis (pdb code 3hvn). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis, PDB code: 3hvn:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis within 5.0Å range: probe atom residue distance (Å) B Occ A:F505 b:0.3 occ:1.00 F7 A:CFH505 0.0 0.3 1.0 C1 A:CFH505 1.3 0.2 1.0 F6 A:CFH505 2.2 0.8 1.0 F5 A:CFH505 2.2 0.4 1.0 C2 A:CFH505 2.3 0.2 1.0 O4 A:CFH505 2.6 0.7 1.0 C3 A:CFH505 3.6 0.1 1.0 F8 A:CFH505 4.0 0.4 1.0 F10 A:CFH505 4.0 0.6 1.0 CG2 A:VAL331 4.5 76.9 1.0 CG1 A:ILE341 4.6 0.4 1.0 F9 A:CFH505 4.6 0.6 1.0 CD1 A:ILE341 4.7 0.1 1.0

Fluorine binding site 2 out of 6 in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis within 5.0Å range: probe atom residue distance (Å) B Occ A:F505 b:0.4 occ:1.00 F5 A:CFH505 0.0 0.4 1.0 C1 A:CFH505 1.3 0.2 1.0 F6 A:CFH505 2.2 0.8 1.0 F7 A:CFH505 2.2 0.3 1.0 C2 A:CFH505 2.3 0.2 1.0 F8 A:CFH505 2.6 0.4 1.0 C3 A:CFH505 2.7 0.1 1.0 F10 A:CFH505 2.9 0.6 1.0 O4 A:CFH505 2.9 0.7 1.0 CG1 A:ILE341 3.3 0.4 1.0 F9 A:CFH505 4.0 0.6 1.0 CD1 A:ILE341 4.0 0.1 1.0 CB A:ILE341 4.6 0.5 1.0 O A:ILE341 4.7 0.5 1.0 CA A:ILE341 4.7 0.2 1.0

Fluorine binding site 3 out of 6 in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis within 5.0Å range: probe atom residue distance (Å) B Occ A:F505 b:0.8 occ:1.00 F6 A:CFH505 0.0 0.8 1.0 C1 A:CFH505 1.3 0.2 1.0 F7 A:CFH505 2.2 0.3 1.0 F5 A:CFH505 2.2 0.4 1.0 C2 A:CFH505 2.3 0.2 1.0 F10 A:CFH505 2.6 0.6 1.0 C3 A:CFH505 3.0 0.1 1.0 O4 A:CFH505 3.5 0.7 1.0 F8 A:CFH505 3.7 0.4 1.0 F9 A:CFH505 4.1 0.6 1.0

Fluorine binding site 4 out of 6 in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis within 5.0Å range: probe atom residue distance (Å) B Occ A:F505 b:0.6 occ:1.00 F10 A:CFH505 0.0 0.6 1.0 C3 A:CFH505 1.3 0.1 1.0 F9 A:CFH505 2.2 0.6 1.0 F8 A:CFH505 2.2 0.4 1.0 C2 A:CFH505 2.3 0.2 1.0 F6 A:CFH505 2.6 0.8 1.0 C1 A:CFH505 2.7 0.2 1.0 F5 A:CFH505 2.9 0.4 1.0 O4 A:CFH505 3.6 0.7 1.0 F7 A:CFH505 4.0 0.3 1.0 O A:GLU344 4.2 0.0 1.0 CB A:ASP323 4.5 0.7 1.0 OD2 A:ASP323 4.8 0.9 1.0 CA A:GLY345 4.9 0.7 1.0 C A:GLU344 4.9 0.5 1.0

Fluorine binding site 5 out of 6 in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis within 5.0Å range: probe atom residue distance (Å) B Occ A:F505 b:0.4 occ:1.00 F8 A:CFH505 0.0 0.4 1.0 C3 A:CFH505 1.3 0.1 1.0 F9 A:CFH505 2.2 0.6 1.0 F10 A:CFH505 2.2 0.6 1.0 C2 A:CFH505 2.3 0.2 1.0 F5 A:CFH505 2.6 0.4 1.0 O4 A:CFH505 2.7 0.7 1.0 C1 A:CFH505 3.0 0.2 1.0 F6 A:CFH505 3.7 0.8 1.0 F7 A:CFH505 4.0 0.3 1.0 NH2 A:ARG272 4.2 0.6 1.0 CA A:GLY345 4.4 0.7 1.0 O A:ILE341 4.5 0.5 1.0 CG1 A:ILE341 4.5 0.4 1.0 CD1 A:ILE319 4.6 99.7 1.0 CG1 A:ILE319 4.7 84.5 1.0 OD2 A:ASP323 4.7 0.9 1.0 O A:GLU344 4.9 0.0 1.0 N A:GLY345 5.0 0.6 1.0

Fluorine binding site 6 out of 6 in the Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis within 5.0Å range: probe atom residue distance (Å) B Occ A:F505 b:0.6 occ:1.00 F9 A:CFH505 0.0 0.6 1.0 C3 A:CFH505 1.3 0.1 1.0 F8 A:CFH505 2.2 0.4 1.0 F10 A:CFH505 2.2 0.6 1.0 C2 A:CFH505 2.3 0.2 1.0 OD2 A:ASP323 2.8 0.9 1.0 O4 A:CFH505 2.9 0.7 1.0 CB A:ASP323 3.1 0.7 1.0 CG A:ASP323 3.1 0.7 1.0 C1 A:CFH505 3.6 0.2 1.0 F5 A:CFH505 4.0 0.4 1.0 F6 A:CFH505 4.1 0.8 1.0 OD1 A:ASP323 4.1 0.4 1.0 CD1 A:ILE319 4.1 99.7 1.0 CA A:ASP323 4.6 0.4 1.0 F7 A:CFH505 4.6 0.3 1.0 NH2 A:ARG272 4.7 0.6 1.0 CG1 A:ILE319 4.8 84.5 1.0

L.Xu, B.Huang, H.Du, X.C.Zhang, J.Xu, X.Li, Z.Rao. Crystal Structure of Cytotoxin Protein Suilysin From Streptococcus Suis. Protein Cell V. 1 96 2010.
ISSN: ESSN 1674-8018
PubMed: 21204001
DOI: 10.1007/S13238-010-0012-3