Fluorine in PDB 3nlz: Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
All present enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine:
1.14.13.39;
Protein crystallography data
The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine, PDB code: 3nlz
was solved by
H.Li,
S.L.Delker,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.64 /
1.92
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.910,
110.433,
163.991,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.4 /
21
|
Other elements in 3nlz:
The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
(pdb code 3nlz). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine, PDB code: 3nlz:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 1 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:25.6
occ:0.60
|
F5
|
A:3XD800
|
0.0
|
25.6
|
0.6
|
C4
|
A:3XD800
|
1.3
|
25.4
|
0.6
|
F6
|
A:3XD800
|
2.1
|
24.2
|
0.6
|
C3
|
A:3XD800
|
2.3
|
34.1
|
0.4
|
C11
|
A:3XD800
|
2.3
|
25.4
|
0.6
|
C3
|
A:3XD800
|
2.3
|
21.5
|
0.6
|
C12
|
A:3XD800
|
2.7
|
27.0
|
0.6
|
N2
|
A:3XD800
|
2.8
|
32.7
|
0.4
|
N2
|
A:3XD800
|
2.9
|
23.4
|
0.6
|
C2
|
A:3XD800
|
2.9
|
21.9
|
0.6
|
C2
|
A:3XD800
|
2.9
|
30.0
|
0.4
|
C4
|
A:3XD800
|
3.1
|
36.4
|
0.4
|
CG2
|
A:VAL567
|
3.1
|
26.7
|
1.0
|
F6
|
A:3XD800
|
3.3
|
38.0
|
0.4
|
C11
|
A:3XD800
|
3.4
|
35.9
|
0.4
|
C16
|
A:3XD800
|
3.6
|
27.4
|
0.6
|
OE1
|
A:GLN478
|
3.7
|
36.9
|
1.0
|
CD
|
A:GLN478
|
3.7
|
36.3
|
1.0
|
C16
|
A:3XD800
|
3.8
|
35.0
|
0.4
|
CB
|
A:PRO565
|
3.9
|
26.4
|
1.0
|
CG
|
A:GLN478
|
4.0
|
33.1
|
1.0
|
C12
|
A:3XD800
|
4.0
|
36.4
|
0.4
|
N
|
A:ALA566
|
4.1
|
27.3
|
1.0
|
C13
|
A:3XD800
|
4.1
|
27.2
|
0.6
|
C
|
A:PRO565
|
4.2
|
27.0
|
1.0
|
N
|
A:VAL567
|
4.2
|
27.0
|
1.0
|
NE2
|
A:GLN478
|
4.2
|
37.0
|
1.0
|
F5
|
A:3XD800
|
4.3
|
38.6
|
0.4
|
CA
|
A:PRO565
|
4.4
|
27.6
|
1.0
|
C1
|
A:3XD800
|
4.4
|
24.1
|
0.6
|
OE2
|
A:GLU592
|
4.4
|
31.8
|
0.5
|
C1
|
A:3XD800
|
4.4
|
28.0
|
0.4
|
CB
|
A:VAL567
|
4.4
|
26.3
|
1.0
|
C
|
A:ALA566
|
4.5
|
28.3
|
1.0
|
CA
|
A:VAL567
|
4.5
|
27.0
|
1.0
|
O
|
A:HOH1010
|
4.6
|
45.9
|
1.0
|
C15
|
A:3XD800
|
4.7
|
35.6
|
0.4
|
C15
|
A:3XD800
|
4.7
|
25.9
|
0.6
|
CA
|
A:ALA566
|
4.8
|
27.2
|
1.0
|
O
|
A:PRO565
|
4.8
|
26.1
|
1.0
|
C14
|
A:3XD800
|
4.9
|
26.4
|
0.6
|
C13
|
A:3XD800
|
4.9
|
35.5
|
0.4
|
OE1
|
A:GLU592
|
4.9
|
31.3
|
0.5
|
OE1
|
A:GLU592
|
4.9
|
26.7
|
0.5
|
|
Fluorine binding site 2 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 2 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:38.6
occ:0.40
|
F5
|
A:3XD800
|
0.0
|
38.6
|
0.4
|
C4
|
A:3XD800
|
1.3
|
36.4
|
0.4
|
F6
|
A:3XD800
|
2.1
|
38.0
|
0.4
|
CBA
|
A:HEM750
|
2.1
|
31.4
|
1.0
|
C3
|
A:3XD800
|
2.2
|
21.5
|
0.6
|
C11
|
A:3XD800
|
2.3
|
35.9
|
0.4
|
C3
|
A:3XD800
|
2.3
|
34.1
|
0.4
|
C12
|
A:3XD800
|
2.9
|
36.4
|
0.4
|
C2A
|
A:HEM750
|
2.9
|
27.9
|
1.0
|
N2
|
A:3XD800
|
2.9
|
32.7
|
0.4
|
C1A
|
A:HEM750
|
2.9
|
26.4
|
1.0
|
CAA
|
A:HEM750
|
3.1
|
30.1
|
1.0
|
CHA
|
A:HEM750
|
3.2
|
25.9
|
1.0
|
CGA
|
A:HEM750
|
3.2
|
32.5
|
1.0
|
C16
|
A:3XD800
|
3.3
|
27.4
|
0.6
|
C11
|
A:3XD800
|
3.3
|
25.4
|
0.6
|
C4
|
A:3XD800
|
3.3
|
25.4
|
0.6
|
N2
|
A:3XD800
|
3.3
|
23.4
|
0.6
|
C16
|
A:3XD800
|
3.3
|
35.0
|
0.4
|
O2A
|
A:HEM750
|
3.4
|
33.3
|
1.0
|
OE1
|
A:GLU592
|
3.5
|
26.7
|
0.5
|
C3A
|
A:HEM750
|
3.5
|
27.6
|
1.0
|
NA
|
A:HEM750
|
3.6
|
27.4
|
1.0
|
OE1
|
A:GLU592
|
3.6
|
31.3
|
0.5
|
O
|
A:HOH1010
|
3.6
|
45.9
|
1.0
|
C4A
|
A:HEM750
|
3.9
|
27.3
|
1.0
|
C4D
|
A:HEM750
|
4.0
|
25.6
|
1.0
|
F6
|
A:3XD800
|
4.0
|
24.2
|
0.6
|
C15
|
A:3XD800
|
4.0
|
25.9
|
0.6
|
C12
|
A:3XD800
|
4.1
|
27.0
|
0.6
|
C13
|
A:3XD800
|
4.2
|
35.5
|
0.4
|
F5
|
A:3XD800
|
4.3
|
25.6
|
0.6
|
C2
|
A:3XD800
|
4.3
|
30.0
|
0.4
|
O1A
|
A:HEM750
|
4.3
|
31.9
|
1.0
|
CMA
|
A:HEM750
|
4.4
|
27.7
|
1.0
|
C2
|
A:3XD800
|
4.5
|
21.9
|
0.6
|
CD
|
A:GLU592
|
4.5
|
24.4
|
0.5
|
C15
|
A:3XD800
|
4.5
|
35.6
|
0.4
|
CD
|
A:GLU592
|
4.5
|
30.2
|
0.5
|
ND
|
A:HEM750
|
4.6
|
25.9
|
1.0
|
OE2
|
A:GLU592
|
4.6
|
31.8
|
0.5
|
C14
|
A:3XD800
|
4.7
|
26.4
|
0.6
|
C13
|
A:3XD800
|
4.7
|
27.2
|
0.6
|
CBD
|
A:HEM750
|
4.8
|
26.5
|
1.0
|
C14
|
A:3XD800
|
4.8
|
35.5
|
0.4
|
FE
|
A:HEM750
|
4.9
|
25.8
|
1.0
|
C3D
|
A:HEM750
|
4.9
|
26.2
|
1.0
|
CHB
|
A:HEM750
|
5.0
|
25.7
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 3 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:24.2
occ:0.60
|
F6
|
A:3XD800
|
0.0
|
24.2
|
0.6
|
C4
|
A:3XD800
|
1.3
|
25.4
|
0.6
|
C3
|
A:3XD800
|
2.0
|
34.1
|
0.4
|
F5
|
A:3XD800
|
2.1
|
25.6
|
0.6
|
C3
|
A:3XD800
|
2.3
|
21.5
|
0.6
|
C11
|
A:3XD800
|
2.4
|
25.4
|
0.6
|
N2
|
A:3XD800
|
2.6
|
23.4
|
0.6
|
OE2
|
A:GLU592
|
2.8
|
31.8
|
0.5
|
C16
|
A:3XD800
|
2.9
|
27.4
|
0.6
|
N2
|
A:3XD800
|
3.0
|
32.7
|
0.4
|
OE1
|
A:GLU592
|
3.1
|
31.3
|
0.5
|
C2
|
A:3XD800
|
3.1
|
30.0
|
0.4
|
CD
|
A:GLU592
|
3.1
|
30.2
|
0.5
|
OE1
|
A:GLU592
|
3.1
|
26.7
|
0.5
|
C4
|
A:3XD800
|
3.2
|
36.4
|
0.4
|
C12
|
A:3XD800
|
3.2
|
36.4
|
0.4
|
C11
|
A:3XD800
|
3.3
|
35.9
|
0.4
|
C2
|
A:3XD800
|
3.4
|
21.9
|
0.6
|
CB
|
A:PRO565
|
3.5
|
26.4
|
1.0
|
CE2
|
A:TYR588
|
3.5
|
29.6
|
1.0
|
C12
|
A:3XD800
|
3.5
|
27.0
|
0.6
|
O
|
A:HOH1011
|
3.8
|
17.8
|
1.0
|
F5
|
A:3XD800
|
4.0
|
38.6
|
0.4
|
OH
|
A:TYR588
|
4.1
|
31.8
|
1.0
|
F6
|
A:3XD800
|
4.1
|
38.0
|
0.4
|
CZ
|
A:TYR588
|
4.1
|
29.8
|
1.0
|
C13
|
A:3XD800
|
4.1
|
35.5
|
0.4
|
OE1
|
A:GLN478
|
4.2
|
36.9
|
1.0
|
CD
|
A:GLU592
|
4.2
|
24.4
|
0.5
|
C15
|
A:3XD800
|
4.2
|
25.9
|
0.6
|
C1
|
A:3XD800
|
4.3
|
28.0
|
0.4
|
CD2
|
A:TYR588
|
4.3
|
27.8
|
1.0
|
C16
|
A:3XD800
|
4.3
|
35.0
|
0.4
|
CG
|
A:GLU592
|
4.3
|
31.2
|
0.5
|
CA
|
A:PRO565
|
4.5
|
27.6
|
1.0
|
CD
|
A:GLN478
|
4.5
|
36.3
|
1.0
|
C1
|
A:3XD800
|
4.6
|
24.1
|
0.6
|
CG
|
A:PRO565
|
4.6
|
27.1
|
1.0
|
NE2
|
A:GLN478
|
4.7
|
37.0
|
1.0
|
C13
|
A:3XD800
|
4.7
|
27.2
|
0.6
|
OE2
|
A:GLU592
|
4.8
|
19.9
|
0.5
|
C14
|
A:3XD800
|
4.9
|
35.5
|
0.4
|
C14
|
A:3XD800
|
5.0
|
26.4
|
0.6
|
C
|
A:PRO565
|
5.0
|
27.0
|
1.0
|
C15
|
A:3XD800
|
5.0
|
35.6
|
0.4
|
|
Fluorine binding site 4 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 4 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:38.0
occ:0.40
|
F6
|
A:3XD800
|
0.0
|
38.0
|
0.4
|
C4
|
A:3XD800
|
1.3
|
36.4
|
0.4
|
F5
|
A:3XD800
|
2.1
|
38.6
|
0.4
|
C3
|
A:3XD800
|
2.1
|
21.5
|
0.6
|
C11
|
A:3XD800
|
2.3
|
35.9
|
0.4
|
C3
|
A:3XD800
|
2.4
|
34.1
|
0.4
|
N2
|
A:3XD800
|
2.6
|
32.7
|
0.4
|
C16
|
A:3XD800
|
2.7
|
35.0
|
0.4
|
C4
|
A:3XD800
|
2.9
|
25.4
|
0.6
|
C11
|
A:3XD800
|
2.9
|
25.4
|
0.6
|
O
|
A:HOH1010
|
2.9
|
45.9
|
1.0
|
CG2
|
A:VAL567
|
3.0
|
26.7
|
1.0
|
C12
|
A:3XD800
|
3.1
|
27.0
|
0.6
|
F5
|
A:3XD800
|
3.3
|
25.6
|
0.6
|
N2
|
A:3XD800
|
3.3
|
23.4
|
0.6
|
C12
|
A:3XD800
|
3.6
|
36.4
|
0.4
|
C16
|
A:3XD800
|
3.7
|
27.4
|
0.6
|
C2
|
A:3XD800
|
3.9
|
21.9
|
0.6
|
CHA
|
A:HEM750
|
3.9
|
25.9
|
1.0
|
C2
|
A:3XD800
|
3.9
|
30.0
|
0.4
|
C13
|
A:3XD800
|
3.9
|
27.2
|
0.6
|
CBA
|
A:HEM750
|
4.0
|
31.4
|
1.0
|
C4D
|
A:HEM750
|
4.0
|
25.6
|
1.0
|
CBD
|
A:HEM750
|
4.0
|
26.5
|
1.0
|
C15
|
A:3XD800
|
4.1
|
35.6
|
0.4
|
F6
|
A:3XD800
|
4.1
|
24.2
|
0.6
|
C1A
|
A:HEM750
|
4.1
|
26.4
|
1.0
|
ND
|
A:HEM750
|
4.3
|
25.9
|
1.0
|
C15
|
A:3XD800
|
4.4
|
25.9
|
0.6
|
CB
|
A:VAL567
|
4.4
|
26.3
|
1.0
|
O2A
|
A:HEM750
|
4.5
|
33.3
|
1.0
|
C14
|
A:3XD800
|
4.5
|
26.4
|
0.6
|
C3D
|
A:HEM750
|
4.5
|
26.2
|
1.0
|
NA
|
A:HEM750
|
4.6
|
27.4
|
1.0
|
C2A
|
A:HEM750
|
4.6
|
27.9
|
1.0
|
O2D
|
A:HEM750
|
4.7
|
30.4
|
1.0
|
C13
|
A:3XD800
|
4.7
|
35.5
|
0.4
|
CGA
|
A:HEM750
|
4.8
|
32.5
|
1.0
|
CE1
|
A:PHE584
|
4.8
|
25.6
|
1.0
|
C14
|
A:3XD800
|
4.9
|
35.5
|
0.4
|
CAA
|
A:HEM750
|
4.9
|
30.1
|
1.0
|
CGD
|
A:HEM750
|
4.9
|
30.3
|
1.0
|
CAD
|
A:HEM750
|
5.0
|
27.7
|
1.0
|
OE1
|
A:GLU592
|
5.0
|
26.7
|
0.5
|
C1D
|
A:HEM750
|
5.0
|
24.4
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 5 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:25.9
occ:0.60
|
F5
|
B:3XD800
|
0.0
|
25.9
|
0.6
|
C4
|
B:3XD800
|
1.3
|
25.3
|
0.6
|
C3
|
B:3XD800
|
2.1
|
30.3
|
0.4
|
F6
|
B:3XD800
|
2.1
|
26.1
|
0.6
|
C11
|
B:3XD800
|
2.3
|
23.6
|
0.6
|
C3
|
B:3XD800
|
2.3
|
22.8
|
0.6
|
C12
|
B:3XD800
|
2.6
|
24.1
|
0.6
|
N2
|
B:3XD800
|
2.9
|
23.4
|
0.6
|
N2
|
B:3XD800
|
3.0
|
29.1
|
0.4
|
C2
|
B:3XD800
|
3.0
|
29.0
|
0.4
|
C2
|
B:3XD800
|
3.1
|
24.0
|
0.6
|
C4
|
B:3XD800
|
3.3
|
31.7
|
0.4
|
CG2
|
B:VAL567
|
3.3
|
25.7
|
1.0
|
C11
|
B:3XD800
|
3.5
|
31.9
|
0.4
|
C16
|
B:3XD800
|
3.6
|
25.9
|
0.6
|
OE1
|
B:GLN478
|
3.6
|
34.2
|
1.0
|
CD
|
B:GLN478
|
3.6
|
32.9
|
1.0
|
F6
|
B:3XD800
|
3.8
|
32.4
|
0.4
|
CB
|
B:PRO565
|
3.9
|
23.8
|
1.0
|
CG
|
B:GLN478
|
3.9
|
27.9
|
1.0
|
C16
|
B:3XD800
|
3.9
|
31.9
|
0.4
|
N
|
B:ALA566
|
4.0
|
24.1
|
1.0
|
C13
|
B:3XD800
|
4.0
|
24.7
|
0.6
|
C12
|
B:3XD800
|
4.1
|
31.9
|
0.4
|
C
|
B:PRO565
|
4.1
|
24.7
|
1.0
|
NE2
|
B:GLN478
|
4.2
|
31.9
|
1.0
|
CA
|
B:PRO565
|
4.2
|
23.9
|
1.0
|
N
|
B:VAL567
|
4.3
|
23.4
|
1.0
|
F5
|
B:3XD800
|
4.3
|
33.6
|
0.4
|
OE2
|
B:GLU592
|
4.4
|
25.0
|
0.5
|
C
|
B:ALA566
|
4.5
|
24.8
|
1.0
|
C1
|
B:3XD800
|
4.5
|
24.7
|
0.6
|
C1
|
B:3XD800
|
4.6
|
28.5
|
0.4
|
O
|
B:HOH1200
|
4.6
|
39.3
|
1.0
|
CB
|
B:VAL567
|
4.6
|
22.8
|
1.0
|
CA
|
B:VAL567
|
4.6
|
23.7
|
1.0
|
C15
|
B:3XD800
|
4.7
|
24.7
|
0.6
|
CA
|
B:ALA566
|
4.8
|
24.6
|
1.0
|
O
|
B:PRO565
|
4.8
|
24.4
|
1.0
|
C15
|
B:3XD800
|
4.8
|
31.9
|
0.4
|
OE1
|
B:GLU592
|
4.8
|
24.1
|
0.5
|
C14
|
B:3XD800
|
4.9
|
25.2
|
0.6
|
C13
|
B:3XD800
|
4.9
|
31.5
|
0.4
|
OE1
|
B:GLU592
|
5.0
|
27.6
|
0.5
|
|
Fluorine binding site 6 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 6 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:33.6
occ:0.40
|
F5
|
B:3XD800
|
0.0
|
33.6
|
0.4
|
C4
|
B:3XD800
|
1.3
|
31.7
|
0.4
|
F6
|
B:3XD800
|
2.1
|
32.4
|
0.4
|
CBA
|
B:HEM750
|
2.2
|
31.5
|
1.0
|
C3
|
B:3XD800
|
2.2
|
22.8
|
0.6
|
C11
|
B:3XD800
|
2.3
|
31.9
|
0.4
|
C3
|
B:3XD800
|
2.3
|
30.3
|
0.4
|
C12
|
B:3XD800
|
2.7
|
31.9
|
0.4
|
N2
|
B:3XD800
|
2.8
|
29.1
|
0.4
|
C16
|
B:3XD800
|
2.9
|
25.9
|
0.6
|
C2A
|
B:HEM750
|
3.0
|
25.9
|
1.0
|
C11
|
B:3XD800
|
3.1
|
23.6
|
0.6
|
C4
|
B:3XD800
|
3.2
|
25.3
|
0.6
|
C1A
|
B:HEM750
|
3.2
|
23.7
|
1.0
|
OE1
|
B:GLU592
|
3.2
|
24.1
|
0.5
|
N2
|
B:3XD800
|
3.2
|
23.4
|
0.6
|
CGA
|
B:HEM750
|
3.2
|
30.4
|
1.0
|
OE1
|
B:GLU592
|
3.2
|
27.6
|
0.5
|
CAA
|
B:HEM750
|
3.3
|
27.5
|
1.0
|
O2A
|
B:HEM750
|
3.4
|
31.4
|
1.0
|
C3A
|
B:HEM750
|
3.4
|
25.0
|
1.0
|
C16
|
B:3XD800
|
3.5
|
31.9
|
0.4
|
CHA
|
B:HEM750
|
3.6
|
21.9
|
1.0
|
F6
|
B:3XD800
|
3.7
|
26.1
|
0.6
|
NA
|
B:HEM750
|
3.7
|
24.1
|
1.0
|
C15
|
B:3XD800
|
3.8
|
24.7
|
0.6
|
C4A
|
B:HEM750
|
3.9
|
24.3
|
1.0
|
CD
|
B:GLU592
|
4.0
|
22.8
|
0.5
|
C13
|
B:3XD800
|
4.0
|
31.5
|
0.4
|
O
|
B:HOH1200
|
4.1
|
39.3
|
1.0
|
C12
|
B:3XD800
|
4.2
|
24.1
|
0.6
|
C2
|
B:3XD800
|
4.2
|
29.0
|
0.4
|
CD
|
B:GLU592
|
4.2
|
24.1
|
0.5
|
CMA
|
B:HEM750
|
4.2
|
25.7
|
1.0
|
F5
|
B:3XD800
|
4.3
|
25.9
|
0.6
|
O1A
|
B:HEM750
|
4.3
|
35.5
|
1.0
|
OE2
|
B:GLU592
|
4.4
|
25.0
|
0.5
|
C4D
|
B:HEM750
|
4.4
|
22.9
|
1.0
|
C2
|
B:3XD800
|
4.5
|
24.0
|
0.6
|
OE2
|
B:GLU592
|
4.5
|
18.7
|
0.5
|
C15
|
B:3XD800
|
4.6
|
31.9
|
0.4
|
C14
|
B:3XD800
|
4.7
|
25.2
|
0.6
|
C14
|
B:3XD800
|
4.8
|
31.6
|
0.4
|
C13
|
B:3XD800
|
4.8
|
24.7
|
0.6
|
CHB
|
B:HEM750
|
4.9
|
23.2
|
1.0
|
ND
|
B:HEM750
|
4.9
|
22.4
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 7 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:26.1
occ:0.60
|
F6
|
B:3XD800
|
0.0
|
26.1
|
0.6
|
C4
|
B:3XD800
|
1.3
|
25.3
|
0.6
|
F5
|
B:3XD800
|
2.1
|
25.9
|
0.6
|
C3
|
B:3XD800
|
2.2
|
30.3
|
0.4
|
C11
|
B:3XD800
|
2.3
|
23.6
|
0.6
|
C3
|
B:3XD800
|
2.3
|
22.8
|
0.6
|
N2
|
B:3XD800
|
2.8
|
23.4
|
0.6
|
OE1
|
B:GLU592
|
2.9
|
24.1
|
0.5
|
C16
|
B:3XD800
|
2.9
|
25.9
|
0.6
|
OE2
|
B:GLU592
|
3.0
|
25.0
|
0.5
|
N2
|
B:3XD800
|
3.0
|
29.1
|
0.4
|
C12
|
B:3XD800
|
3.2
|
31.9
|
0.4
|
OE1
|
B:GLU592
|
3.2
|
27.6
|
0.5
|
CD
|
B:GLU592
|
3.2
|
24.1
|
0.5
|
C4
|
B:3XD800
|
3.2
|
31.7
|
0.4
|
C2
|
B:3XD800
|
3.3
|
29.0
|
0.4
|
C11
|
B:3XD800
|
3.3
|
31.9
|
0.4
|
CB
|
B:PRO565
|
3.4
|
23.8
|
1.0
|
C12
|
B:3XD800
|
3.5
|
24.1
|
0.6
|
CE2
|
B:TYR588
|
3.5
|
25.5
|
1.0
|
C2
|
B:3XD800
|
3.7
|
24.0
|
0.6
|
F5
|
B:3XD800
|
3.7
|
33.6
|
0.4
|
O
|
B:HOH1009
|
3.9
|
18.7
|
1.0
|
CD
|
B:GLU592
|
4.0
|
22.8
|
0.5
|
CZ
|
B:TYR588
|
4.0
|
24.9
|
1.0
|
OH
|
B:TYR588
|
4.0
|
27.7
|
1.0
|
C13
|
B:3XD800
|
4.1
|
31.5
|
0.4
|
C15
|
B:3XD800
|
4.2
|
24.7
|
0.6
|
CD2
|
B:TYR588
|
4.2
|
25.6
|
1.0
|
OE1
|
B:GLN478
|
4.3
|
34.2
|
1.0
|
C16
|
B:3XD800
|
4.3
|
31.9
|
0.4
|
CA
|
B:PRO565
|
4.3
|
23.9
|
1.0
|
CG
|
B:GLU592
|
4.3
|
26.0
|
0.5
|
F6
|
B:3XD800
|
4.4
|
32.4
|
0.4
|
CG
|
B:PRO565
|
4.6
|
22.1
|
1.0
|
C1
|
B:3XD800
|
4.6
|
28.5
|
0.4
|
OE2
|
B:GLU592
|
4.6
|
18.7
|
0.5
|
CD
|
B:GLN478
|
4.6
|
32.9
|
1.0
|
C13
|
B:3XD800
|
4.6
|
24.7
|
0.6
|
NE2
|
B:GLN478
|
4.8
|
31.9
|
1.0
|
C
|
B:PRO565
|
4.9
|
24.7
|
1.0
|
C1
|
B:3XD800
|
4.9
|
24.7
|
0.6
|
C14
|
B:3XD800
|
4.9
|
31.6
|
0.4
|
C14
|
B:3XD800
|
4.9
|
25.2
|
0.6
|
|
Fluorine binding site 8 out
of 8 in 3nlz
Go back to
Fluorine Binding Sites List in 3nlz
Fluorine binding site 8 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-(2,2-Difluoro-2-Phenylethylamino)Ethoxy) Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:32.4
occ:0.40
|
F6
|
B:3XD800
|
0.0
|
32.4
|
0.4
|
C4
|
B:3XD800
|
1.3
|
31.7
|
0.4
|
F5
|
B:3XD800
|
2.1
|
33.6
|
0.4
|
C11
|
B:3XD800
|
2.3
|
31.9
|
0.4
|
C3
|
B:3XD800
|
2.4
|
30.3
|
0.4
|
C3
|
B:3XD800
|
2.4
|
22.8
|
0.6
|
C16
|
B:3XD800
|
2.7
|
31.9
|
0.4
|
N2
|
B:3XD800
|
2.9
|
29.1
|
0.4
|
O
|
B:HOH1200
|
3.0
|
39.3
|
1.0
|
C11
|
B:3XD800
|
3.1
|
23.6
|
0.6
|
C4
|
B:3XD800
|
3.2
|
25.3
|
0.6
|
CG2
|
B:VAL567
|
3.4
|
25.7
|
1.0
|
C12
|
B:3XD800
|
3.4
|
24.1
|
0.6
|
CHA
|
B:HEM750
|
3.5
|
21.9
|
1.0
|
C16
|
B:3XD800
|
3.5
|
25.9
|
0.6
|
N2
|
B:3XD800
|
3.5
|
23.4
|
0.6
|
C12
|
B:3XD800
|
3.6
|
31.9
|
0.4
|
C4D
|
B:HEM750
|
3.6
|
22.9
|
1.0
|
CBA
|
B:HEM750
|
3.7
|
31.5
|
1.0
|
C1A
|
B:HEM750
|
3.7
|
23.7
|
1.0
|
F5
|
B:3XD800
|
3.8
|
25.9
|
0.6
|
CBD
|
B:HEM750
|
4.0
|
24.6
|
1.0
|
ND
|
B:HEM750
|
4.0
|
22.4
|
1.0
|
C15
|
B:3XD800
|
4.1
|
31.9
|
0.4
|
C13
|
B:3XD800
|
4.1
|
24.7
|
0.6
|
C15
|
B:3XD800
|
4.2
|
24.7
|
0.6
|
C2
|
B:3XD800
|
4.2
|
29.0
|
0.4
|
C3D
|
B:HEM750
|
4.2
|
23.9
|
1.0
|
C2
|
B:3XD800
|
4.3
|
24.0
|
0.6
|
NA
|
B:HEM750
|
4.3
|
24.1
|
1.0
|
O2A
|
B:HEM750
|
4.3
|
31.4
|
1.0
|
C2A
|
B:HEM750
|
4.3
|
25.9
|
1.0
|
F6
|
B:3XD800
|
4.4
|
26.1
|
0.6
|
C14
|
B:3XD800
|
4.5
|
25.2
|
0.6
|
CGA
|
B:HEM750
|
4.5
|
30.4
|
1.0
|
CAA
|
B:HEM750
|
4.6
|
27.5
|
1.0
|
CB
|
B:VAL567
|
4.7
|
22.8
|
1.0
|
C13
|
B:3XD800
|
4.7
|
31.5
|
0.4
|
C1D
|
B:HEM750
|
4.8
|
22.1
|
1.0
|
CAD
|
B:HEM750
|
4.8
|
24.7
|
1.0
|
O2D
|
B:HEM750
|
4.8
|
30.3
|
1.0
|
FE
|
B:HEM750
|
4.9
|
23.9
|
1.0
|
C2D
|
B:HEM750
|
4.9
|
21.8
|
1.0
|
CE1
|
B:PHE584
|
4.9
|
23.3
|
1.0
|
C14
|
B:3XD800
|
4.9
|
31.6
|
0.4
|
CGD
|
B:HEM750
|
5.0
|
28.3
|
1.0
|
C3A
|
B:HEM750
|
5.0
|
25.0
|
1.0
|
C4A
|
B:HEM750
|
5.0
|
24.3
|
1.0
|
|
Reference:
F.Xue,
H.Li,
S.L.Delker,
J.Fang,
P.Martasek,
L.J.Roman,
T.L.Poulos,
R.B.Silverman.
Potent, Highly Selective, and Orally Bioavailable Gem-Difluorinated Monocationic Inhibitors of Neuronal Nitric Oxide Synthase. J.Am.Chem.Soc. V. 132 14229 2010.
ISSN: ISSN 0002-7863
PubMed: 20843082
DOI: 10.1021/JA106175Q
Page generated: Wed Jul 31 21:01:49 2024
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