Atomistry » Fluorine » PDB 3nlz-3og7 » 3o8r
Atomistry »
  Fluorine »
    PDB 3nlz-3og7 »
      3o8r »

Fluorine in PDB 3o8r: Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

Enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

All present enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv:
3.4.21.98; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8r was solved by T.C.Appleby, J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.68 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 91.033, 110.827, 141.979, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 26.3

Other elements in 3o8r:

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 2 atoms
Bromine (Br) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv (pdb code 3o8r). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8r:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 3o8r

Go back to Fluorine Binding Sites List in 3o8r
Fluorine binding site 1 out of 3 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F885

b:34.4
occ:1.00
F1 A:BEF885 0.0 34.4 1.0
BE A:BEF885 1.5 36.1 1.0
MG A:MG850 2.1 37.0 1.0
F3 A:BEF885 2.5 36.2 1.0
F2 A:BEF885 2.5 43.0 1.0
O3B A:ADP875 2.7 36.5 1.0
O A:HOH810 2.9 35.1 1.0
O A:HOH647 3.0 36.6 1.0
OE2 A:GLU291 3.2 35.5 1.0
OE1 A:GLU291 3.2 35.0 1.0
O1B A:ADP875 3.3 30.4 1.0
O A:HOH633 3.3 27.7 1.0
PB A:ADP875 3.4 34.4 1.0
O A:HOH811 3.4 35.7 1.0
CD A:GLU291 3.6 34.9 1.0
CE A:LYS210 4.1 36.0 1.0
OG A:SER211 4.3 36.9 1.0
NZ A:LYS210 4.3 32.8 1.0
O2B A:ADP875 4.3 36.9 1.0
CA A:GLY417 4.3 37.5 1.0
NH2 A:ARG467 4.5 40.6 1.0
NH2 A:ARG464 4.6 31.1 1.0
N A:GLY417 4.6 38.8 1.0
O3A A:ADP875 4.7 37.7 1.0
O2A A:ADP875 4.7 36.4 1.0
NH1 A:ARG464 4.8 39.1 1.0
NH1 A:ARG467 4.9 35.8 1.0
O A:GLY417 4.9 38.1 1.0
OE1 A:GLN460 5.0 37.0 1.0

Fluorine binding site 2 out of 3 in 3o8r

Go back to Fluorine Binding Sites List in 3o8r
Fluorine binding site 2 out of 3 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F885

b:43.0
occ:1.00
F2 A:BEF885 0.0 43.0 1.0
BE A:BEF885 1.6 36.1 1.0
F1 A:BEF885 2.5 34.4 1.0
F3 A:BEF885 2.5 36.2 1.0
O3B A:ADP875 2.6 36.5 1.0
NH2 A:ARG464 2.7 31.1 1.0
NH1 A:ARG467 2.7 35.8 1.0
O A:HOH647 3.1 36.6 1.0
NH1 A:ARG464 3.2 39.1 1.0
CZ A:ARG464 3.3 39.1 1.0
NH2 A:ARG467 3.4 40.6 1.0
CZ A:ARG467 3.5 44.6 1.0
CB A:THR206 3.7 36.1 1.0
N A:GLY207 3.8 34.5 1.0
CA A:THR206 3.8 36.8 1.0
CG2 A:THR206 3.9 35.4 1.0
PB A:ADP875 4.1 34.4 1.0
OE1 A:GLN460 4.2 37.0 1.0
C A:THR206 4.3 37.1 1.0
MG A:MG850 4.3 37.0 1.0
O A:HOH633 4.4 27.7 1.0
O A:HOH811 4.6 35.7 1.0
NE A:ARG464 4.6 37.8 1.0
O A:GLY463 4.7 41.1 1.0
N A:GLY417 4.7 38.8 1.0
NE A:ARG467 4.7 40.6 1.0
CA A:GLY207 4.8 42.7 1.0
O1B A:ADP875 4.8 30.4 1.0
CA A:GLY417 4.8 37.5 1.0
O3A A:ADP875 4.9 37.7 1.0
OG1 A:THR206 4.9 32.2 1.0
O2B A:ADP875 5.0 36.9 1.0

Fluorine binding site 3 out of 3 in 3o8r

Go back to Fluorine Binding Sites List in 3o8r
Fluorine binding site 3 out of 3 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F885

b:36.2
occ:1.00
F3 A:BEF885 0.0 36.2 1.0
BE A:BEF885 1.5 36.1 1.0
F1 A:BEF885 2.5 34.4 1.0
F2 A:BEF885 2.5 43.0 1.0
O3B A:ADP875 2.7 36.5 1.0
NZ A:LYS210 2.8 32.8 1.0
O A:HOH633 2.9 27.7 1.0
CA A:THR206 3.2 36.8 1.0
CE A:LYS210 3.4 36.0 1.0
CB A:ALA323 3.4 25.8 1.0
PB A:ADP875 3.6 34.4 1.0
CG2 A:THR206 3.7 35.4 1.0
CB A:THR206 3.7 36.1 1.0
O2B A:ADP875 3.8 36.9 1.0
N A:GLY207 3.8 34.5 1.0
N A:THR206 3.9 29.9 1.0
O A:HOH647 4.0 36.6 1.0
O A:PRO205 4.0 30.3 1.0
C A:THR206 4.1 37.1 1.0
MG A:MG850 4.2 37.0 1.0
C A:PRO205 4.3 31.2 1.0
O A:HOH810 4.3 35.1 1.0
O1B A:ADP875 4.3 30.4 1.0
N A:ALA323 4.4 26.1 1.0
CA A:ALA323 4.5 25.2 1.0
O A:ALA204 4.6 31.2 1.0
OE1 A:GLU291 4.6 35.0 1.0
NH2 A:ARG464 4.7 31.1 1.0
OE1 A:GLN460 4.7 37.0 1.0
NH1 A:ARG467 4.7 35.8 1.0
CD A:LYS210 4.8 36.6 1.0
NE2 A:GLN460 4.9 23.4 1.0
O3A A:ADP875 5.0 37.7 1.0

Reference:

T.C.Appleby, R.Anderson, O.Fedorova, A.M.Pyle, R.Wang, X.Liu, K.M.Brendza, J.R.Somoza. Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv. J.Mol.Biol. V. 405 1139 2011.
ISSN: ISSN 0022-2836
PubMed: 21145896
DOI: 10.1016/J.JMB.2010.11.034
Page generated: Wed Jul 31 21:11:05 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy