Chemical elements
  Fluorine
    Isotopes
    Energy
    Production
    Application
    PDB 16pk-1c8m
    PDB 1c9d-1eau
    PDB 1ec0-1grn
    PDB 1gs4-1j97
    PDB 1jdj-1mu8
    PDB 1mue-1oyt
    PDB 1oz1-1rby
    PDB 1rbz-1tu6
    PDB 1tuy-1w9i
    PDB 1w9j-1yw2
    PDB 1yw9-2ax8
    PDB 2ax9-2dqt
    PDB 2dqu-2ftk
    PDB 2fvd-2hhn
    PDB 2hiw-2izs
    PDB 2j51-2onh
    PDB 2oo8-2pow
    PDB 2pq9-2qzl
    PDB 2qzo-2vev
    PDB 2vew-2wf7
    PDB 2wf8-2xhd
    PDB 2xkk-3ar9
    PDB 3az8-3cej
    PDB 3cem-3dh3
    PDB 3dhf-3el7
    PDB 3el8-3fln
    PDB 3flq-3gc7
    PDB 3gc8-3h7w
    PDB 3h82-3i81
    PDB 3i8d-3jx1
    PDB 3jx2-3ktk
    PDB 3ktu-3lj6
    PDB 3lk9-3mqf
    PDB 3ms4-3nz7
    PDB 3o1g-3p4a
      3o1g
      3o28
      3o29
      3o2a
      3o50
      3o51
      3o6g
      3o6h
      3o8a
      3o8d
      3o8r
      3obg
      3odv
      3ofs
      3og7
      3ohm
      3olf
      3omk
      3omm
      3oof
      3ook
      3oot
      3opd
      3oq6
      3orb
      3orn
      3os8
      3os9
      3osa
      3ouh
      3ovx
      3ovz
      3ow2
      3oxz
      3oy3
      3oya
      3oyb
      3oyc
      3oyd
      3oye
      3oyf
      3oyg
      3oyh
      3oyj
      3oyl
      3oyn
      3p0p
      3p2r
      3p3i
      3p4a
    PDB 3p4b-3ti1
    PDB 3tik-4acx
    PDB 4afe-4fk3
    PDB 4fod-7gch

Fluorine in the structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex With Magnesium and Raltegravir At 2.65 Resolution (pdb 3oya)






The binding sites of Fluorine atom in the structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex With Magnesium and Raltegravir At 2.65 Resolution (pdb code 3oya). This binding sites where shown with 5.0 Angstroms radius around Fluorine atom.
The 3oya structure was solved by S.HARE, P.CHEREPANOV, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)38.0-2.6
Space groupP41212
a (A)159.755
b (A)159.755
c (A)124.139
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)20.5
Rfree (%)22.8


Fluorine Binding Sites:

Fluorine binding site 1 out of 1 in 3oya


Fluorine binding site 1 out of 1 in 3oya
Click to enlarge
stereopicture of Fluorine binding site 1 out of 1 in 3oya
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Fluorine in the PDB 3oya. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Fluorine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro214, A: Gln215, C: Dg4, D: Dc16, A: Rlt398, C: Hoh253, C: Hoh328,

conact list:


AtomAtomDistance (A)
FO A:Pro2144.70
FCB A:Pro2144.73
FC A:Pro2144.36
FN A:Gln2153.90
FOE1 A:Gln2154.08
FCB A:Gln2154.26
FCD A:Gln2154.07
FCG A:Gln2153.52
FCA A:Gln2153.90
FN3 C:Dg44.23
FN2 C:Dg44.10
FC2 C:Dg43.57
FC6 C:Dg43.20
FN1 C:Dg43.00
FC5 C:Dg43.90
FN7 C:Dg44.83
FC4 C:Dg44.29
FO6 C:Dg43.46
FN3 D:Dc163.42
FC2 D:Dc164.14
FC6 D:Dc164.72
FN1 D:Dc164.73
FC5 D:Dc164.11
FO2 D:Dc164.74
FC4 D:Dc163.37
FN4 D:Dc163.34
FCAL A:Rlt3983.63
FCAJ A:Rlt3982.37
FCAK A:Rlt3982.37
FCAY A:Rlt3984.11
FFAI A:Rlt3980.00
FCAX A:Rlt3981.35
FCAM A:Rlt3983.64
FO C:Hoh2534.81
FO C:Hoh3284.72

interactive model:




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