Atomistry » Fluorine » PDB 3ptm-3qri » 3puw
Atomistry »
  Fluorine »
    PDB 3ptm-3qri »
      3puw »

Fluorine in PDB 3puw: Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4

Enzymatic activity of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4

All present enzymatic activity of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4:
3.6.3.19;

Protein crystallography data

The structure of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4, PDB code: 3puw was solved by M.L.Oldham, J.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 81.881, 97.344, 112.336, 85.76, 79.42, 72.45
R / Rfree (%) 22 / 25.5

Other elements in 3puw:

The structure of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Aluminium (Al) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 (pdb code 3puw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4, PDB code: 3puw:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 1 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3001

b:21.9
occ:1.00
 F1 A:ALF3001 0.0 21.9 1.0
AL A:ALF3001 1.8 20.8 1.0
O3B A:ADP2501 2.5 25.0 1.0
F4 A:ALF3001 2.5 21.9 1.0
F3 A:ALF3001 2.5 21.2 1.0
OG A:SER38 2.6 26.3 1.0
OG B:SER135 2.8 24.6 1.0
N A:GLY39 3.1 26.9 1.0
CA B:GLY137 3.1 22.1 1.0
N B:GLY137 3.1 21.9 1.0
CA A:SER38 3.3 26.1 1.0
CB A:SER38 3.3 26.2 1.0
O A:HOH384 3.3 13.4 1.0
C A:SER38 3.6 27.1 1.0
F2 A:ALF3001 3.6 19.9 1.0
CB B:SER135 3.7 25.1 1.0
C B:GLY137 3.9 22.6 1.0
N B:GLN138 3.9 23.5 1.0
PB A:ADP2501 4.0 27.1 1.0
CA A:GLY39 4.0 28.4 1.0
O B:ASN163 4.2 26.9 1.0
C B:GLY136 4.4 21.3 1.0
N B:GLY136 4.6 22.6 1.0
O A:SER38 4.7 27.8 1.0
N A:SER38 4.7 26.4 1.0
C B:SER135 4.7 23.3 1.0
NE2 A:HIS192 4.7 24.4 1.0
O3A A:ADP2501 4.8 27.7 1.0
O1B A:ADP2501 4.8 27.7 1.0
O2B A:ADP2501 4.8 26.4 1.0
MG A:MG1501 4.8 26.1 1.0
CA B:SER135 4.8 24.6 1.0
O B:GLY137 5.0 22.7 1.0

Fluorine binding site 2 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 2 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3001

b:19.9
occ:1.00
 F2 A:ALF3001 0.0 19.9 1.0
AL A:ALF3001 1.8 20.8 1.0
MG A:MG1501 2.0 26.1 1.0
O A:HOH383 2.3 23.8 1.0
O A:HOH384 2.4 13.4 1.0
F4 A:ALF3001 2.5 21.9 1.0
F3 A:ALF3001 2.5 21.2 1.0
OE2 A:GLU159 2.6 25.5 1.0
O2B A:ADP2501 2.9 26.4 1.0
O3B A:ADP2501 2.9 25.0 1.0
OE1 A:GLN82 3.0 26.4 1.0
PB A:ADP2501 3.3 27.1 1.0
NE2 A:GLN82 3.4 24.7 1.0
O A:HOH382 3.5 20.0 1.0
CD A:GLN82 3.5 24.9 1.0
F1 A:ALF3001 3.6 21.9 1.0
CD A:GLU159 3.8 24.3 1.0
OG A:SER43 4.1 25.0 1.0
NE2 A:HIS192 4.1 24.4 1.0
NZ A:LYS42 4.1 23.4 1.0
O1B A:ADP2501 4.1 27.7 1.0
CE A:LYS42 4.1 23.7 1.0
OE1 A:GLU159 4.4 23.7 1.0
O3A A:ADP2501 4.7 27.7 1.0
OD1 A:ASP158 4.7 24.5 1.0
N B:GLY137 4.8 21.9 1.0
CE1 A:HIS192 4.9 24.8 1.0
CG A:GLU159 4.9 24.4 1.0
CD2 A:HIS192 4.9 25.2 1.0
CG A:GLN82 5.0 24.4 1.0

Fluorine binding site 3 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 3 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3001

b:21.2
occ:1.00
 F3 A:ALF3001 0.0 21.2 1.0
AL A:ALF3001 1.8 20.8 1.0
F2 A:ALF3001 2.5 19.9 1.0
F1 A:ALF3001 2.5 21.9 1.0
O3B A:ADP2501 2.7 25.0 1.0
NZ A:LYS42 2.8 23.4 1.0
NE2 A:HIS192 2.8 24.4 1.0
O A:HOH384 2.9 13.4 1.0
CE1 A:HIS192 3.3 24.8 1.0
CA A:SER38 3.3 26.1 1.0
CE A:LYS42 3.5 23.7 1.0
PB A:ADP2501 3.6 27.1 1.0
F4 A:ALF3001 3.6 21.9 1.0
N A:GLY39 3.7 26.9 1.0
O1B A:ADP2501 3.8 27.7 1.0
OE2 A:GLU159 3.9 25.5 1.0
CB A:SER38 4.0 26.2 1.0
C A:SER38 4.0 27.1 1.0
N A:SER38 4.0 26.4 1.0
CD2 A:HIS192 4.1 25.2 1.0
O2B A:ADP2501 4.1 26.4 1.0
OG A:SER38 4.2 26.3 1.0
MG A:MG1501 4.2 26.1 1.0
O A:PRO37 4.2 26.7 1.0
O A:HOH383 4.3 23.8 1.0
O B:ASN163 4.3 26.9 1.0
C A:PRO37 4.4 26.4 1.0
ND1 A:HIS192 4.6 25.8 1.0
O A:GLY36 4.8 25.0 1.0
CA A:GLY39 4.9 28.4 1.0
CD A:GLU159 4.9 24.3 1.0
O3A A:ADP2501 5.0 27.7 1.0
CG A:HIS192 5.0 26.1 1.0

Fluorine binding site 4 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 4 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3001

b:21.9
occ:1.00
 F4 A:ALF3001 0.0 21.9 1.0
AL A:ALF3001 1.8 20.8 1.0
F2 A:ALF3001 2.5 19.9 1.0
F1 A:ALF3001 2.5 21.9 1.0
N B:GLY137 2.7 21.9 1.0
O3B A:ADP2501 2.8 25.0 1.0
N B:GLY136 2.8 22.6 1.0
O A:HOH382 2.9 20.0 1.0
O A:HOH384 2.9 13.4 1.0
NE2 A:GLN82 3.0 24.7 1.0
MG A:MG1501 3.0 26.1 1.0
OG B:SER135 3.1 24.6 1.0
CB B:SER135 3.2 25.1 1.0
CA B:GLY136 3.3 21.4 1.0
C B:GLY136 3.4 21.3 1.0
C B:SER135 3.5 23.3 1.0
F3 A:ALF3001 3.6 21.2 1.0
CA B:GLY137 3.7 22.1 1.0
O2B A:ADP2501 3.8 26.4 1.0
PB A:ADP2501 3.8 27.1 1.0
OE1 A:GLN82 3.8 26.4 1.0
CD A:GLN82 3.8 24.9 1.0
CA B:SER135 3.8 24.6 1.0
O B:SER135 4.4 23.1 1.0
O1A A:ADP2501 4.4 26.4 1.0
O3A A:ADP2501 4.5 27.7 1.0
OE2 A:GLU159 4.6 25.5 1.0
O A:HOH383 4.6 23.8 1.0
O B:GLY136 4.7 20.9 1.0
N B:GLN138 4.8 23.5 1.0
C B:GLY137 4.8 22.6 1.0
O B:HOH390 4.9 20.7 1.0
N A:GLY39 4.9 26.9 1.0
O B:ASN163 5.0 26.9 1.0
OG A:SER43 5.0 25.0 1.0

Fluorine binding site 5 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 5 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F3002

b:28.8
occ:1.00
 F1 B:ALF3002 0.0 28.8 1.0
AL B:ALF3002 1.8 27.9 1.0
OG B:SER38 2.5 36.3 1.0
F3 B:ALF3002 2.5 29.9 1.0
F4 B:ALF3002 2.6 29.0 1.0
O3B B:ADP2502 2.7 32.0 1.0
OG A:SER135 2.8 34.3 1.0
N B:GLY39 2.9 37.6 1.0
CA A:GLY137 3.2 30.4 1.0
CA B:SER38 3.2 37.1 1.0
CB B:SER38 3.2 36.9 1.0
N A:GLY137 3.2 30.4 1.0
C B:SER38 3.3 38.4 1.0
O B:HOH384 3.4 31.1 1.0
F2 B:ALF3002 3.6 28.9 1.0
CB A:SER135 3.7 34.9 1.0
C A:GLY137 3.9 31.0 1.0
N A:GLN138 3.9 31.6 1.0
CA B:GLY39 3.9 39.0 1.0
O A:ASN163 4.2 31.1 1.0
PB B:ADP2502 4.2 34.1 1.0
O B:SER38 4.4 40.3 1.0
C A:GLY136 4.5 29.6 1.0
N B:SER38 4.6 38.4 1.0
N A:GLY136 4.7 31.2 1.0
NE2 B:HIS192 4.7 34.5 1.0
C A:SER135 4.8 32.1 1.0
O3A B:ADP2502 4.8 35.3 1.0
MG B:MG1502 4.8 22.9 1.0
O A:GLY137 4.9 31.0 1.0
CA A:SER135 4.9 33.9 1.0
NH1 A:ARG141 4.9 33.4 1.0
NZ B:LYS42 5.0 36.0 1.0
CG A:GLN138 5.0 35.7 1.0

Fluorine binding site 6 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 6 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F3002

b:28.9
occ:1.00
 F2 B:ALF3002 0.0 28.9 1.0
AL B:ALF3002 1.8 27.9 1.0
MG B:MG1502 1.9 22.9 1.0
O B:HOH384 2.4 31.1 1.0
F4 B:ALF3002 2.5 29.0 1.0
OE2 B:GLU159 2.5 28.6 1.0
O B:HOH383 2.6 36.3 1.0
F3 B:ALF3002 2.6 29.9 1.0
O3B B:ADP2502 2.7 32.0 1.0
O2B B:ADP2502 3.1 32.1 1.0
OE1 B:GLN82 3.3 28.2 1.0
NE2 B:GLN82 3.3 27.7 1.0
PB B:ADP2502 3.3 34.1 1.0
O B:HOH382 3.5 29.8 1.0
F1 B:ALF3002 3.6 28.8 1.0
CD B:GLN82 3.6 27.5 1.0
CD B:GLU159 3.7 28.6 1.0
CE B:LYS42 4.0 34.9 1.0
NZ B:LYS42 4.1 36.0 1.0
OG B:SER43 4.1 30.0 1.0
NE2 B:HIS192 4.1 34.5 1.0
O1B B:ADP2502 4.2 34.8 1.0
OE1 B:GLU159 4.4 28.7 1.0
O3A B:ADP2502 4.7 35.3 1.0
CG B:GLU159 4.7 28.5 1.0
N A:GLY137 4.8 30.4 1.0
CD2 B:HIS192 4.8 32.9 1.0
O A:ASN163 5.0 31.1 1.0

Fluorine binding site 7 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 7 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F3002

b:29.9
occ:1.00
 F3 B:ALF3002 0.0 29.9 1.0
AL B:ALF3002 1.8 27.9 1.0
F1 B:ALF3002 2.5 28.8 1.0
F2 B:ALF3002 2.6 28.9 1.0
NE2 B:HIS192 2.6 34.5 1.0
O3B B:ADP2502 2.7 32.0 1.0
NZ B:LYS42 2.9 36.0 1.0
O B:HOH384 2.9 31.1 1.0
CA B:SER38 3.2 37.1 1.0
CE1 B:HIS192 3.3 35.0 1.0
CE B:LYS42 3.5 34.9 1.0
F4 B:ALF3002 3.6 29.0 1.0
N B:GLY39 3.6 37.6 1.0
OE2 B:GLU159 3.7 28.6 1.0
CD2 B:HIS192 3.8 32.9 1.0
PB B:ADP2502 3.9 34.1 1.0
CB B:SER38 3.9 36.9 1.0
C B:SER38 3.9 38.4 1.0
N B:SER38 4.0 38.4 1.0
OG B:SER38 4.0 36.3 1.0
O B:PRO37 4.1 38.6 1.0
O A:ASN163 4.1 31.1 1.0
O1B B:ADP2502 4.2 34.8 1.0
MG B:MG1502 4.3 22.9 1.0
C B:PRO37 4.4 38.9 1.0
ND1 B:HIS192 4.5 35.0 1.0
O2B B:ADP2502 4.5 32.1 1.0
O B:HOH383 4.6 36.3 1.0
O B:GLY36 4.8 36.8 1.0
CA B:GLY39 4.8 39.0 1.0
CG B:HIS192 4.8 34.5 1.0
CD B:GLU159 4.9 28.6 1.0
CA A:GLY137 5.0 30.4 1.0
OG A:SER135 5.0 34.3 1.0

Fluorine binding site 8 out of 8 in 3puw

Go back to Fluorine Binding Sites List in 3puw
Fluorine binding site 8 out of 8 in the Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of An Outward-Facing Mbp-Maltose Transporter Complex Bound to Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F3002

b:29.0
occ:1.00
 F4 B:ALF3002 0.0 29.0 1.0
AL B:ALF3002 1.8 27.9 1.0
F2 B:ALF3002 2.5 28.9 1.0
F1 B:ALF3002 2.6 28.8 1.0
O3B B:ADP2502 2.7 32.0 1.0
N A:GLY137 2.8 30.4 1.0
N A:GLY136 2.8 31.2 1.0
O B:HOH384 2.8 31.1 1.0
OG A:SER135 2.9 34.3 1.0
MG B:MG1502 2.9 22.9 1.0
O B:HOH382 3.0 29.8 1.0
CB A:SER135 3.1 34.9 1.0
NE2 B:GLN82 3.1 27.7 1.0
CA A:GLY136 3.4 29.6 1.0
C A:SER135 3.5 32.1 1.0
F3 B:ALF3002 3.6 29.9 1.0
C A:GLY136 3.6 29.6 1.0
CA A:SER135 3.7 33.9 1.0
CA A:GLY137 3.8 30.4 1.0
PB B:ADP2502 3.8 34.1 1.0
OE1 B:GLN82 3.9 28.2 1.0
O2B B:ADP2502 3.9 32.1 1.0
CD B:GLN82 3.9 27.5 1.0
O3A B:ADP2502 4.4 35.3 1.0
O A:SER135 4.4 32.0 1.0
O1A B:ADP2502 4.4 33.5 1.0
OE2 B:GLU159 4.5 28.6 1.0
O B:HOH383 4.6 36.3 1.0
N A:GLN138 4.7 31.6 1.0
N B:GLY39 4.7 37.6 1.0
O A:GLY136 4.8 28.9 1.0
C A:GLY137 4.8 31.0 1.0
OG B:SER38 4.9 36.3 1.0
O A:ASN163 5.0 31.1 1.0

Reference:

M.L.Oldham, J.Chen. Snapshots of the Maltose Transporter During Atp Hydrolysis. Proc.Natl.Acad.Sci.Usa V. 108 15152 2011.
ISSN: ISSN 0027-8424
PubMed: 21825153
DOI: 10.1073/PNAS.1108858108
Page generated: Sun Dec 13 11:53:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy