Atomistry » Fluorine » PDB 3qrj-3rgf » 3qrs
Atomistry »
  Fluorine »
    PDB 3qrj-3rgf »
      3qrs »

Fluorine in PDB 3qrs: Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor

Enzymatic activity of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor

All present enzymatic activity of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor:
3.4.23.16;

Protein crystallography data

The structure of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor, PDB code: 3qrs was solved by I.Lindemann, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.92 / 1.59
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.900, 86.170, 46.500, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.3

Other elements in 3qrs:

The structure of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor (pdb code 3qrs). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor, PDB code: 3qrs:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 3qrs

Go back to Fluorine Binding Sites List in 3qrs
Fluorine binding site 1 out of 3 in the Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F100

b:21.7
occ:1.00
F5 B:NK8100 0.0 21.7 1.0
C4 B:NK8100 1.3 18.1 1.0
F7 B:NK8100 2.1 22.1 1.0
F6 B:NK8100 2.2 14.4 1.0
C3 B:NK8100 2.3 9.3 1.0
C2 B:NK8100 2.7 8.3 1.0
NH1 B:ARG8 3.3 18.4 1.0
NH2 B:ARG8 3.3 14.8 1.0
CZ B:ARG8 3.4 12.8 1.0
C8 B:NK8100 3.6 8.7 1.0
O B:HOH183 3.7 31.2 1.0
O A:HOH157 4.0 16.5 1.0
CG1 B:VAL82 4.0 8.8 0.7
C1 B:NK8100 4.1 8.5 1.0
NE B:ARG8 4.2 10.1 1.0
CG1 B:VAL82 4.2 8.9 0.3
O A:HOH102 4.5 11.5 1.0
CG2 B:VAL82 4.5 9.6 0.7
CB B:PRO81 4.6 10.8 1.0
C9 B:NK8100 4.7 9.0 1.0
CB B:VAL82 4.9 8.5 0.3
CD B:ARG8 4.9 10.5 1.0
C10 B:NK8100 4.9 8.3 1.0
CG B:PRO81 4.9 14.7 1.0
CB B:VAL82 5.0 8.5 0.7

Fluorine binding site 2 out of 3 in 3qrs

Go back to Fluorine Binding Sites List in 3qrs
Fluorine binding site 2 out of 3 in the Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F100

b:14.4
occ:1.00
F6 B:NK8100 0.0 14.4 1.0
C4 B:NK8100 1.3 18.1 1.0
F7 B:NK8100 2.1 22.1 1.0
F5 B:NK8100 2.2 21.7 1.0
C3 B:NK8100 2.3 9.3 1.0
C8 B:NK8100 3.0 8.7 1.0
O A:HOH102 3.1 11.5 1.0
NH2 B:ARG8 3.3 14.8 1.0
C2 B:NK8100 3.3 8.3 1.0
O B:HOH183 3.8 31.2 1.0
O B:HOH125 3.8 14.2 1.0
OD2 A:ASP29 3.9 14.1 1.0
CZ B:ARG8 4.0 12.8 1.0
O A:HOH157 4.1 16.5 1.0
N34 B:NK8100 4.1 10.6 1.0
C9 B:NK8100 4.3 9.0 1.0
C36 B:NK8100 4.3 9.2 1.0
C1 B:NK8100 4.5 8.5 1.0
NH1 B:ARG8 4.5 18.4 1.0
CG A:ASP29 4.6 10.1 1.0
NE B:ARG8 4.7 10.1 1.0
O A:GLY48 4.7 12.3 1.0
C33 B:NK8100 4.7 11.0 1.0
C32 B:NK8100 4.9 8.1 1.0
O A:HOH133 4.9 20.6 1.0
OD1 A:ASP29 4.9 7.5 1.0
C10 B:NK8100 4.9 8.3 1.0

Fluorine binding site 3 out of 3 in 3qrs

Go back to Fluorine Binding Sites List in 3qrs
Fluorine binding site 3 out of 3 in the Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Hiv-1 Protease (Mutant Q7K L33I L63I) in Complex with A Three-Armed Pyrrolidine-Based Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F100

b:22.1
occ:1.00
F7 B:NK8100 0.0 22.1 1.0
C4 B:NK8100 1.3 18.1 1.0
F6 B:NK8100 2.1 14.4 1.0
F5 B:NK8100 2.1 21.7 1.0
C3 B:NK8100 2.3 9.3 1.0
C8 B:NK8100 2.8 8.7 1.0
C2 B:NK8100 3.5 8.3 1.0
CB B:PRO81 3.6 10.8 1.0
O B:HOH183 3.7 31.2 1.0
C9 B:NK8100 4.1 9.0 1.0
CG B:PRO81 4.1 14.7 1.0
O B:HOH125 4.2 14.2 1.0
O A:GLY48 4.2 12.3 1.0
NH2 B:ARG8 4.5 14.8 1.0
C1 B:NK8100 4.6 8.5 1.0
C10 B:NK8100 4.9 8.3 1.0
CA B:PRO81 5.0 12.4 1.0

Reference:

I.Lindemann, N.Klee, A.Heine, W.E.Diederich, G.Klebe. Design of A Series of Novel Three-Armed Pyrrolidine-Based Inhibitors For Hiv-1 Protease To Be Published.
Page generated: Wed Jul 31 22:08:53 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy