Fluorine in PDB 3r2f: Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Enzymatic activity of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
All present enzymatic activity of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide:
3.4.23.46;
Protein crystallography data
The structure of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide, PDB code: 3r2f
was solved by
J.K.Muckelbauer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
2.53
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.306,
130.255,
86.927,
90.00,
96.53,
90.00
|
R / Rfree (%)
|
28 /
33
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
(pdb code 3r2f). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide, PDB code: 3r2f:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 1 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F394
b:21.0
occ:1.00
|
F46
|
A:PB0394
|
0.0
|
21.0
|
1.0
|
C11
|
A:PB0394
|
1.3
|
19.0
|
1.0
|
C8
|
A:PB0394
|
2.3
|
18.9
|
1.0
|
C6
|
A:PB0394
|
2.4
|
20.8
|
1.0
|
O
|
A:HOH418
|
2.7
|
2.8
|
1.0
|
O
|
A:GLN73
|
2.9
|
28.1
|
1.0
|
CD1
|
A:PHE108
|
3.4
|
21.9
|
1.0
|
C12
|
A:PB0394
|
3.6
|
20.4
|
1.0
|
C10
|
A:PB0394
|
3.6
|
18.4
|
1.0
|
CA
|
A:GLY74
|
3.7
|
26.7
|
1.0
|
O
|
A:LYS107
|
3.7
|
28.2
|
1.0
|
CA
|
A:PHE108
|
3.7
|
24.6
|
1.0
|
C
|
A:GLN73
|
4.0
|
28.1
|
1.0
|
CD2
|
A:TYR71
|
4.0
|
20.9
|
1.0
|
C7
|
A:PB0394
|
4.1
|
17.8
|
1.0
|
CB
|
A:TYR71
|
4.2
|
22.5
|
1.0
|
C
|
A:GLY74
|
4.2
|
26.2
|
1.0
|
O
|
A:PHE108
|
4.2
|
24.1
|
1.0
|
CE1
|
A:PHE108
|
4.2
|
22.1
|
1.0
|
CG
|
A:TYR71
|
4.3
|
21.2
|
1.0
|
C18
|
A:PB0394
|
4.3
|
18.5
|
1.0
|
CB
|
A:PHE108
|
4.3
|
24.4
|
1.0
|
N
|
A:GLY74
|
4.3
|
27.4
|
1.0
|
CG
|
A:PHE108
|
4.3
|
23.2
|
1.0
|
O
|
A:GLY74
|
4.5
|
25.9
|
1.0
|
C
|
A:PHE108
|
4.5
|
23.9
|
1.0
|
C
|
A:LYS107
|
4.5
|
27.7
|
1.0
|
N
|
A:PHE108
|
4.6
|
26.3
|
1.0
|
F47
|
A:PB0394
|
4.7
|
20.9
|
1.0
|
N
|
A:LYS75
|
4.8
|
25.9
|
1.0
|
CE2
|
A:TYR71
|
4.8
|
20.7
|
1.0
|
O43
|
A:PB0394
|
4.9
|
16.7
|
1.0
|
C28
|
A:PB0394
|
4.9
|
18.4
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 2 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F394
b:20.9
occ:1.00
|
F47
|
A:PB0394
|
0.0
|
20.9
|
1.0
|
C12
|
A:PB0394
|
1.3
|
20.4
|
1.0
|
C8
|
A:PB0394
|
2.4
|
18.9
|
1.0
|
C7
|
A:PB0394
|
2.4
|
17.8
|
1.0
|
CZ2
|
A:TRP115
|
3.3
|
16.2
|
1.0
|
CD1
|
A:ILE110
|
3.3
|
24.8
|
1.0
|
C25
|
A:PB0394
|
3.4
|
18.2
|
1.0
|
C26
|
A:PB0394
|
3.5
|
15.1
|
1.0
|
C29
|
A:PB0394
|
3.5
|
19.5
|
1.0
|
CH2
|
A:TRP115
|
3.6
|
16.7
|
1.0
|
C11
|
A:PB0394
|
3.6
|
19.0
|
1.0
|
C10
|
A:PB0394
|
3.7
|
18.4
|
1.0
|
C35
|
A:PB0394
|
3.7
|
18.8
|
1.0
|
CD2
|
A:LEU30
|
3.8
|
15.0
|
1.0
|
O
|
A:PHE108
|
4.1
|
24.1
|
1.0
|
C6
|
A:PB0394
|
4.1
|
20.8
|
1.0
|
C16
|
A:PB0394
|
4.2
|
17.4
|
1.0
|
CG1
|
A:ILE110
|
4.3
|
24.5
|
1.0
|
CE2
|
A:TRP115
|
4.4
|
15.8
|
1.0
|
C18
|
A:PB0394
|
4.6
|
18.5
|
1.0
|
C22
|
A:PB0394
|
4.6
|
18.9
|
1.0
|
F46
|
A:PB0394
|
4.7
|
21.0
|
1.0
|
CZ3
|
A:TRP115
|
4.9
|
16.5
|
1.0
|
C28
|
A:PB0394
|
4.9
|
18.4
|
1.0
|
CD1
|
A:LEU30
|
4.9
|
13.9
|
1.0
|
CG
|
A:LEU30
|
5.0
|
14.6
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 3 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F394
b:21.7
occ:1.00
|
F46
|
B:PB0394
|
0.0
|
21.7
|
1.0
|
C11
|
B:PB0394
|
1.3
|
18.8
|
1.0
|
C6
|
B:PB0394
|
2.3
|
17.7
|
1.0
|
C8
|
B:PB0394
|
2.4
|
18.4
|
1.0
|
O
|
B:GLN73
|
2.8
|
28.1
|
1.0
|
CA
|
B:GLY74
|
3.4
|
26.7
|
1.0
|
CD1
|
B:PHE108
|
3.5
|
22.6
|
1.0
|
C10
|
B:PB0394
|
3.6
|
18.5
|
1.0
|
C12
|
B:PB0394
|
3.6
|
17.6
|
1.0
|
C
|
B:GLN73
|
3.8
|
28.1
|
1.0
|
O
|
B:LYS107
|
3.8
|
28.1
|
1.0
|
CA
|
B:PHE108
|
3.8
|
24.6
|
1.0
|
C
|
B:GLY74
|
3.8
|
26.1
|
1.0
|
CD2
|
B:TYR71
|
3.9
|
20.0
|
1.0
|
CB
|
B:TYR71
|
4.0
|
22.2
|
1.0
|
N
|
B:GLY74
|
4.1
|
27.4
|
1.0
|
C7
|
B:PB0394
|
4.1
|
18.2
|
1.0
|
CG
|
B:TYR71
|
4.1
|
20.8
|
1.0
|
O
|
B:GLY74
|
4.1
|
25.9
|
1.0
|
CB
|
B:PHE108
|
4.2
|
24.5
|
1.0
|
CG
|
B:PHE108
|
4.3
|
23.2
|
1.0
|
CE1
|
B:PHE108
|
4.4
|
22.5
|
1.0
|
O
|
B:PHE108
|
4.5
|
24.0
|
1.0
|
N
|
B:LYS75
|
4.5
|
25.9
|
1.0
|
C18
|
B:PB0394
|
4.5
|
15.8
|
1.0
|
C
|
B:LYS107
|
4.6
|
27.6
|
1.0
|
N
|
B:PHE108
|
4.6
|
26.2
|
1.0
|
C
|
B:PHE108
|
4.7
|
23.9
|
1.0
|
CE2
|
B:TYR71
|
4.7
|
19.7
|
1.0
|
F47
|
B:PB0394
|
4.7
|
18.0
|
1.0
|
O43
|
B:PB0394
|
4.8
|
18.7
|
1.0
|
C28
|
B:PB0394
|
4.8
|
18.8
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 4 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F394
b:18.0
occ:1.00
|
F47
|
B:PB0394
|
0.0
|
18.0
|
1.0
|
C12
|
B:PB0394
|
1.3
|
17.6
|
1.0
|
C8
|
B:PB0394
|
2.4
|
18.4
|
1.0
|
C7
|
B:PB0394
|
2.4
|
18.2
|
1.0
|
C25
|
B:PB0394
|
3.4
|
16.4
|
1.0
|
CZ2
|
B:TRP115
|
3.4
|
15.7
|
1.0
|
CH2
|
B:TRP115
|
3.6
|
16.5
|
1.0
|
C11
|
B:PB0394
|
3.6
|
18.8
|
1.0
|
CD2
|
B:LEU30
|
3.6
|
15.1
|
1.0
|
C10
|
B:PB0394
|
3.6
|
18.5
|
1.0
|
C29
|
B:PB0394
|
3.7
|
17.1
|
1.0
|
CD1
|
B:ILE110
|
3.8
|
24.5
|
1.0
|
O
|
B:PHE108
|
4.0
|
24.0
|
1.0
|
C35
|
B:PB0394
|
4.0
|
17.7
|
1.0
|
C6
|
B:PB0394
|
4.1
|
17.7
|
1.0
|
C26
|
B:PB0394
|
4.2
|
16.3
|
1.0
|
C16
|
B:PB0394
|
4.3
|
15.9
|
1.0
|
C18
|
B:PB0394
|
4.4
|
15.8
|
1.0
|
CG1
|
B:ILE110
|
4.5
|
24.1
|
1.0
|
CE2
|
B:TRP115
|
4.6
|
15.6
|
1.0
|
F46
|
B:PB0394
|
4.7
|
21.7
|
1.0
|
C22
|
B:PB0394
|
4.7
|
17.6
|
1.0
|
C28
|
B:PB0394
|
4.9
|
18.8
|
1.0
|
CZ3
|
B:TRP115
|
4.9
|
16.6
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 5 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F394
b:19.2
occ:1.00
|
F46
|
D:PB0394
|
0.0
|
19.2
|
1.0
|
C11
|
D:PB0394
|
1.3
|
18.2
|
1.0
|
C8
|
D:PB0394
|
2.3
|
18.0
|
1.0
|
C6
|
D:PB0394
|
2.4
|
19.5
|
1.0
|
O
|
D:GLN73
|
3.0
|
28.3
|
1.0
|
CD1
|
D:PHE108
|
3.4
|
22.3
|
1.0
|
C12
|
D:PB0394
|
3.6
|
19.8
|
1.0
|
CA
|
D:GLY74
|
3.6
|
26.7
|
1.0
|
C10
|
D:PB0394
|
3.6
|
17.7
|
1.0
|
CA
|
D:PHE108
|
3.8
|
24.6
|
1.0
|
CB
|
D:TYR71
|
3.9
|
22.9
|
1.0
|
O
|
D:LYS107
|
3.9
|
28.2
|
1.0
|
C
|
D:GLY74
|
4.0
|
26.2
|
1.0
|
CD2
|
D:TYR71
|
4.0
|
21.8
|
1.0
|
C
|
D:GLN73
|
4.0
|
28.1
|
1.0
|
CG
|
D:TYR71
|
4.0
|
22.0
|
1.0
|
C7
|
D:PB0394
|
4.1
|
17.6
|
1.0
|
CE1
|
D:PHE108
|
4.2
|
22.4
|
1.0
|
O
|
D:GLY74
|
4.2
|
26.0
|
1.0
|
CG
|
D:PHE108
|
4.3
|
23.6
|
1.0
|
N
|
D:GLY74
|
4.3
|
27.4
|
1.0
|
CB
|
D:PHE108
|
4.3
|
24.4
|
1.0
|
O
|
D:PHE108
|
4.4
|
24.2
|
1.0
|
C18
|
D:PB0394
|
4.5
|
18.9
|
1.0
|
N
|
D:LYS75
|
4.6
|
25.9
|
1.0
|
C
|
D:PHE108
|
4.6
|
24.0
|
1.0
|
N
|
D:PHE108
|
4.7
|
26.3
|
1.0
|
F47
|
D:PB0394
|
4.7
|
22.1
|
1.0
|
C
|
D:LYS107
|
4.7
|
27.6
|
1.0
|
CE2
|
D:TYR71
|
4.7
|
21.2
|
1.0
|
CD1
|
D:TYR71
|
4.8
|
20.9
|
1.0
|
C28
|
D:PB0394
|
4.9
|
19.2
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 6 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F394
b:22.1
occ:1.00
|
F47
|
D:PB0394
|
0.0
|
22.1
|
1.0
|
C12
|
D:PB0394
|
1.3
|
19.8
|
1.0
|
C7
|
D:PB0394
|
2.4
|
17.6
|
1.0
|
C8
|
D:PB0394
|
2.4
|
18.0
|
1.0
|
CZ2
|
D:TRP115
|
3.3
|
16.0
|
1.0
|
CD1
|
D:ILE110
|
3.3
|
24.4
|
1.0
|
CH2
|
D:TRP115
|
3.4
|
16.6
|
1.0
|
C29
|
D:PB0394
|
3.5
|
19.0
|
1.0
|
C11
|
D:PB0394
|
3.6
|
18.2
|
1.0
|
C25
|
D:PB0394
|
3.6
|
22.7
|
1.0
|
C10
|
D:PB0394
|
3.6
|
17.7
|
1.0
|
C16
|
D:PB0394
|
3.9
|
17.1
|
1.0
|
CD2
|
D:LEU30
|
3.9
|
15.6
|
1.0
|
O
|
D:PHE108
|
4.0
|
24.2
|
1.0
|
C35
|
D:PB0394
|
4.1
|
19.6
|
1.0
|
C6
|
D:PB0394
|
4.1
|
19.5
|
1.0
|
C26
|
D:PB0394
|
4.2
|
19.9
|
1.0
|
CG1
|
D:ILE110
|
4.3
|
24.5
|
1.0
|
C22
|
D:PB0394
|
4.5
|
20.9
|
1.0
|
C18
|
D:PB0394
|
4.5
|
18.9
|
1.0
|
CE2
|
D:TRP115
|
4.6
|
16.1
|
1.0
|
F46
|
D:PB0394
|
4.7
|
19.2
|
1.0
|
CZ3
|
D:TRP115
|
4.7
|
16.5
|
1.0
|
C28
|
D:PB0394
|
4.9
|
19.2
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 7 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F394
b:19.3
occ:1.00
|
F46
|
E:PB0394
|
0.0
|
19.3
|
1.0
|
C11
|
E:PB0394
|
1.3
|
18.4
|
1.0
|
C6
|
E:PB0394
|
2.3
|
19.2
|
1.0
|
C8
|
E:PB0394
|
2.4
|
19.1
|
1.0
|
O
|
E:GLN73
|
2.8
|
28.3
|
1.0
|
CA
|
E:GLY74
|
3.4
|
26.6
|
1.0
|
CD1
|
E:PHE108
|
3.5
|
22.9
|
1.0
|
C10
|
E:PB0394
|
3.6
|
20.4
|
1.0
|
C12
|
E:PB0394
|
3.6
|
20.2
|
1.0
|
C
|
E:GLN73
|
3.7
|
28.1
|
1.0
|
O
|
E:LYS107
|
3.7
|
28.0
|
1.0
|
CD2
|
E:TYR71
|
3.8
|
20.6
|
1.0
|
C
|
E:GLY74
|
3.8
|
26.2
|
1.0
|
CA
|
E:PHE108
|
3.9
|
24.6
|
1.0
|
CB
|
E:TYR71
|
4.0
|
22.5
|
1.0
|
N
|
E:GLY74
|
4.0
|
27.4
|
1.0
|
C7
|
E:PB0394
|
4.1
|
20.4
|
1.0
|
O
|
E:GLY74
|
4.1
|
25.9
|
1.0
|
CG
|
E:TYR71
|
4.1
|
21.4
|
1.0
|
CE1
|
E:PHE108
|
4.2
|
22.5
|
1.0
|
CG
|
E:PHE108
|
4.3
|
23.4
|
1.0
|
CB
|
E:PHE108
|
4.3
|
24.2
|
1.0
|
N
|
E:LYS75
|
4.5
|
25.9
|
1.0
|
O
|
E:PHE108
|
4.5
|
24.2
|
1.0
|
C
|
E:LYS107
|
4.5
|
27.6
|
1.0
|
CE2
|
E:TYR71
|
4.6
|
20.2
|
1.0
|
C18
|
E:PB0394
|
4.6
|
18.0
|
1.0
|
N
|
E:PHE108
|
4.6
|
26.3
|
1.0
|
C
|
E:PHE108
|
4.7
|
23.9
|
1.0
|
F47
|
E:PB0394
|
4.8
|
19.2
|
1.0
|
C28
|
E:PB0394
|
4.9
|
18.9
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 3r2f
Go back to
Fluorine Binding Sites List in 3r2f
Fluorine binding site 8 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with Bms-693391 Aka (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1- Pyrrolidinyl)-N-((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-((2R,4R)- 4-Propoxy-2-Pyrrolidinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F394
b:19.2
occ:1.00
|
F47
|
E:PB0394
|
0.0
|
19.2
|
1.0
|
C12
|
E:PB0394
|
1.4
|
20.2
|
1.0
|
C7
|
E:PB0394
|
2.4
|
20.4
|
1.0
|
C8
|
E:PB0394
|
2.4
|
19.1
|
1.0
|
CD2
|
E:LEU30
|
3.4
|
15.1
|
1.0
|
CH2
|
E:TRP115
|
3.4
|
17.1
|
1.0
|
CZ2
|
E:TRP115
|
3.4
|
16.8
|
1.0
|
C11
|
E:PB0394
|
3.7
|
18.4
|
1.0
|
C10
|
E:PB0394
|
3.7
|
20.4
|
1.0
|
O
|
E:PHE108
|
4.0
|
24.2
|
1.0
|
C25
|
E:PB0394
|
4.0
|
19.3
|
1.0
|
C26
|
E:PB0394
|
4.0
|
13.8
|
1.0
|
C29
|
E:PB0394
|
4.1
|
18.0
|
1.0
|
C6
|
E:PB0394
|
4.1
|
19.2
|
1.0
|
C35
|
E:PB0394
|
4.3
|
17.8
|
1.0
|
C16
|
E:PB0394
|
4.4
|
18.5
|
1.0
|
CD1
|
E:ILE110
|
4.4
|
24.7
|
1.0
|
C18
|
E:PB0394
|
4.5
|
18.0
|
1.0
|
CZ3
|
E:TRP115
|
4.6
|
16.8
|
1.0
|
CE2
|
E:TRP115
|
4.6
|
16.1
|
1.0
|
CG
|
E:LEU30
|
4.7
|
15.8
|
1.0
|
CG1
|
E:ILE110
|
4.7
|
24.6
|
1.0
|
F46
|
E:PB0394
|
4.8
|
19.3
|
1.0
|
CD1
|
E:LEU30
|
4.8
|
15.1
|
1.0
|
C28
|
E:PB0394
|
4.9
|
18.9
|
1.0
|
C22
|
E:PB0394
|
5.0
|
18.0
|
1.0
|
|
Reference:
K.M.Boy,
J.M.Guernon,
J.Shi,
J.H.Toyn,
J.E.Meredith,
D.M.Barten,
C.R.Burton,
C.F.Albright,
J.Marcinkeviciene,
A.C.Good,
A.J.Tebben,
J.K.Muckelbauer,
D.M.Camac,
K.A.Lentz,
J.J.Bronson,
R.E.Olson,
J.E.Macor,
L.A.Thompson.
Monosubstituted {Gamma}-Lactam and Conformationally Constrained 1,3-Diaminopropan-2-Ol Transition-State Isostere Inhibitors of {Beta}-Secretase (Bace). Bioorg.Med.Chem.Lett. V. 21 6916 2011.
ISSN: ISSN 0960-894X
PubMed: 21782431
DOI: 10.1016/J.BMCL.2011.06.109
Page generated: Wed Jul 31 22:12:22 2024
|