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Fluorine in PDB 3scq: Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride

Enzymatic activity of Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride

All present enzymatic activity of Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride, PDB code: 3scq was solved by S.Pengthaisong, S.G.Withers, B.Kuaprasert, J.R.Ketudat Cairns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.01 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.117, 100.905, 126.828, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.6

Other elements in 3scq:

The structure of Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride (pdb code 3scq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride, PDB code: 3scq:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 3scq

Go back to Fluorine Binding Sites List in 3scq
Fluorine binding site 1 out of 2 in the Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F477

b:8.7
occ:1.00
F1 A:GLF477 0.0 8.7 1.0
C1 A:GLF477 1.4 8.3 1.0
O5 A:GLF477 2.3 7.4 1.0
C2 A:GLF477 2.4 8.9 1.0
O2 A:GLF477 2.7 8.5 1.0
OH A:TYR315 2.8 6.5 1.0
C5 A:GLF477 2.9 6.5 1.0
O A:HOH508 3.0 21.1 1.0
C3 A:GLF477 3.0 7.6 1.0
CB A:ALA386 3.4 5.2 1.0
C4 A:GLF477 3.5 7.0 1.0
CE1 A:TYR315 3.7 5.5 1.0
CZ A:TYR315 3.7 5.5 1.0
ND2 A:ASN313 3.7 6.3 1.0
CE3 A:TRP433 4.0 4.0 1.0
CD2 A:TRP433 4.0 4.4 1.0
OE2 A:GLU176 4.1 12.7 1.0
C6 A:GLF477 4.2 6.1 1.0
CG A:TRP433 4.2 4.3 1.0
CG A:ASN313 4.3 7.6 1.0
O3 A:GLF477 4.3 7.1 1.0
O A:HOH528 4.4 19.8 1.0
CB A:TRP433 4.5 4.8 1.0
OE1 A:GLU176 4.6 15.5 1.0
CZ3 A:TRP433 4.6 4.0 1.0
CE2 A:TRP433 4.6 4.8 1.0
CD A:GLU176 4.6 12.4 1.0
O4 A:GLF477 4.6 4.6 1.0
CB A:ASN313 4.7 7.3 1.0
CD1 A:TRP433 4.9 4.5 1.0
OD1 A:ASN313 4.9 6.4 1.0
CA A:ALA386 5.0 5.4 1.0
O6 A:GLF477 5.0 7.3 1.0
CE2 A:TYR315 5.0 5.5 1.0

Fluorine binding site 2 out of 2 in 3scq

Go back to Fluorine Binding Sites List in 3scq
Fluorine binding site 2 out of 2 in the Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Rice BGLU1 E386A Mutant Complexed with Alpha- Glucosyl Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1002

b:9.9
occ:1.00
F1 B:GLF1002 0.0 9.9 1.0
C1 B:GLF1002 1.4 8.9 1.0
O5 B:GLF1002 2.3 8.8 1.0
C2 B:GLF1002 2.4 9.8 1.0
O2 B:GLF1002 2.7 9.2 1.0
OH B:TYR315 2.9 6.7 1.0
C5 B:GLF1002 2.9 9.3 1.0
O B:HOH548 2.9 16.6 1.0
C3 B:GLF1002 2.9 9.3 1.0
CB B:ALA386 3.5 5.2 1.0
C4 B:GLF1002 3.5 9.5 1.0
ND2 B:ASN313 3.7 6.5 1.0
CE1 B:TYR315 3.7 5.5 1.0
CZ B:TYR315 3.8 5.5 1.0
CE3 B:TRP433 4.0 4.2 1.0
CD2 B:TRP433 4.1 4.4 1.0
OE2 B:GLU176 4.1 12.8 1.0
C6 B:GLF1002 4.2 8.6 1.0
O3 B:GLF1002 4.2 8.9 1.0
CG B:ASN313 4.3 7.6 1.0
CG B:TRP433 4.3 4.4 1.0
OE1 B:GLU176 4.5 15.3 1.0
O B:HOH593 4.5 23.0 1.0
CZ3 B:TRP433 4.6 4.1 1.0
CB B:TRP433 4.6 4.9 1.0
CD B:GLU176 4.6 12.3 1.0
O4 B:GLF1002 4.7 8.6 1.0
CE2 B:TRP433 4.7 4.7 1.0
CB B:ASN313 4.7 7.1 1.0
OD1 B:ASN313 4.9 6.3 1.0
CD1 B:TRP433 4.9 4.5 1.0

Reference:

S.Pengthaisong, S.G.Withers, B.Kuaprasert, J.R.Ketudat Cairns. Structural Investigation of the Basis For Cellooligosaccharide Synthesis By Rice BGLU1 Glycosynthases To Be Published.
Page generated: Sun Dec 13 11:55:06 2020

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