Fluorine in PDB 3skg: Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Enzymatic activity of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
All present enzymatic activity of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide:
3.4.23.46;
Protein crystallography data
The structure of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide, PDB code: 3skg
was solved by
J.K.Muckelbauer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.63 /
2.88
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.240,
130.451,
86.872,
90.00,
96.65,
90.00
|
R / Rfree (%)
|
25.5 /
34.8
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
(pdb code 3skg). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide, PDB code: 3skg:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 1 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F394
b:17.6
occ:1.00
|
F47
|
A:PB8394
|
0.0
|
17.6
|
1.0
|
C17
|
A:PB8394
|
1.4
|
11.1
|
1.0
|
C12
|
A:PB8394
|
2.3
|
10.1
|
1.0
|
C10
|
A:PB8394
|
2.4
|
8.6
|
1.0
|
C30
|
A:PB8394
|
3.1
|
9.1
|
1.0
|
CD1
|
A:ILE110
|
3.2
|
16.6
|
1.0
|
CZ2
|
A:TRP115
|
3.2
|
16.7
|
1.0
|
C18
|
A:PB8394
|
3.5
|
12.7
|
1.0
|
C37
|
A:PB8394
|
3.5
|
3.9
|
1.0
|
CH2
|
A:TRP115
|
3.6
|
14.4
|
1.0
|
C16
|
A:PB8394
|
3.6
|
9.2
|
1.0
|
O
|
A:PHE108
|
3.7
|
21.9
|
1.0
|
C11
|
A:PB8394
|
4.0
|
10.9
|
1.0
|
CG1
|
A:ILE110
|
4.0
|
14.3
|
1.0
|
CD2
|
A:LEU30
|
4.2
|
8.0
|
1.0
|
CE2
|
A:TRP115
|
4.3
|
14.7
|
1.0
|
C24
|
A:PB8394
|
4.3
|
10.9
|
1.0
|
C33
|
A:PB8394
|
4.4
|
7.7
|
1.0
|
F48
|
A:PB8394
|
4.6
|
19.3
|
1.0
|
CD1
|
A:LEU30
|
4.7
|
5.7
|
1.0
|
C29
|
A:PB8394
|
4.7
|
4.6
|
1.0
|
CZ3
|
A:TRP115
|
4.8
|
14.4
|
1.0
|
C
|
A:PHE108
|
4.8
|
19.9
|
1.0
|
CE1
|
A:PHE108
|
4.9
|
15.5
|
1.0
|
NE1
|
A:TRP115
|
4.9
|
10.2
|
1.0
|
C32
|
A:PB8394
|
4.9
|
10.7
|
1.0
|
C25
|
A:PB8394
|
4.9
|
12.7
|
1.0
|
CB
|
A:ILE110
|
5.0
|
16.5
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 2 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F394
b:19.3
occ:1.00
|
F48
|
A:PB8394
|
0.0
|
19.3
|
1.0
|
C18
|
A:PB8394
|
1.3
|
12.7
|
1.0
|
C12
|
A:PB8394
|
2.3
|
10.1
|
1.0
|
C11
|
A:PB8394
|
2.3
|
10.9
|
1.0
|
O
|
A:GLN73
|
3.1
|
34.5
|
1.0
|
CD2
|
A:TYR71
|
3.2
|
16.8
|
1.0
|
CD1
|
A:PHE108
|
3.3
|
13.2
|
1.0
|
CB
|
A:TYR71
|
3.3
|
20.6
|
1.0
|
CG
|
A:TYR71
|
3.5
|
19.4
|
1.0
|
C17
|
A:PB8394
|
3.5
|
11.1
|
1.0
|
C16
|
A:PB8394
|
3.6
|
9.2
|
1.0
|
CE1
|
A:PHE108
|
3.9
|
15.5
|
1.0
|
CA
|
A:GLY74
|
4.0
|
31.4
|
1.0
|
C
|
A:GLY74
|
4.0
|
30.3
|
1.0
|
C10
|
A:PB8394
|
4.1
|
8.6
|
1.0
|
CA
|
A:PHE108
|
4.1
|
20.2
|
1.0
|
O
|
A:GLY74
|
4.1
|
28.9
|
1.0
|
C
|
A:GLN73
|
4.2
|
34.0
|
1.0
|
CE2
|
A:TYR71
|
4.3
|
16.8
|
1.0
|
CG
|
A:PHE108
|
4.3
|
15.5
|
1.0
|
O
|
A:LYS107
|
4.4
|
28.9
|
1.0
|
O
|
A:PHE108
|
4.5
|
21.9
|
1.0
|
O
|
A:HOH414
|
4.5
|
6.2
|
1.0
|
CB
|
A:PHE108
|
4.5
|
19.7
|
1.0
|
N
|
A:GLY74
|
4.6
|
32.7
|
1.0
|
N
|
A:LYS75
|
4.6
|
27.8
|
1.0
|
F47
|
A:PB8394
|
4.6
|
17.6
|
1.0
|
O45
|
A:PB8394
|
4.6
|
10.4
|
1.0
|
CD1
|
A:TYR71
|
4.7
|
21.9
|
1.0
|
CA
|
A:TYR71
|
4.7
|
22.8
|
1.0
|
C25
|
A:PB8394
|
4.8
|
12.7
|
1.0
|
C
|
A:PHE108
|
4.8
|
19.9
|
1.0
|
C32
|
A:PB8394
|
4.9
|
10.7
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 3 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F394
b:4.8
occ:1.00
|
F47
|
B:PB8394
|
0.0
|
4.8
|
1.0
|
C17
|
B:PB8394
|
1.3
|
5.4
|
1.0
|
C10
|
B:PB8394
|
2.3
|
8.8
|
1.0
|
C12
|
B:PB8394
|
2.4
|
5.7
|
1.0
|
CZ2
|
B:TRP115
|
3.0
|
12.2
|
1.0
|
CH2
|
B:TRP115
|
3.3
|
12.3
|
1.0
|
C29
|
B:PB8394
|
3.6
|
3.3
|
1.0
|
C16
|
B:PB8394
|
3.7
|
7.1
|
1.0
|
C18
|
B:PB8394
|
3.7
|
9.0
|
1.0
|
CD1
|
B:ILE110
|
3.7
|
17.4
|
1.0
|
O
|
B:PHE108
|
4.0
|
12.5
|
1.0
|
CG1
|
B:ILE110
|
4.1
|
16.6
|
1.0
|
C11
|
B:PB8394
|
4.2
|
6.9
|
1.0
|
C33
|
B:PB8394
|
4.2
|
11.9
|
1.0
|
C37
|
B:PB8394
|
4.3
|
9.9
|
1.0
|
CE2
|
B:TRP115
|
4.3
|
11.8
|
1.0
|
C30
|
B:PB8394
|
4.4
|
9.8
|
1.0
|
CD2
|
B:LEU30
|
4.4
|
7.8
|
1.0
|
C24
|
B:PB8394
|
4.5
|
10.4
|
1.0
|
CZ3
|
B:TRP115
|
4.6
|
11.6
|
1.0
|
C25
|
B:PB8394
|
4.7
|
11.6
|
1.0
|
F48
|
B:PB8394
|
4.8
|
15.8
|
1.0
|
C32
|
B:PB8394
|
4.8
|
10.0
|
1.0
|
NE1
|
B:TRP115
|
5.0
|
12.7
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 4 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F394
b:15.8
occ:1.00
|
F48
|
B:PB8394
|
0.0
|
15.8
|
1.0
|
C18
|
B:PB8394
|
1.3
|
9.0
|
1.0
|
C12
|
B:PB8394
|
2.4
|
5.7
|
1.0
|
C11
|
B:PB8394
|
2.4
|
6.9
|
1.0
|
O
|
B:GLN73
|
2.8
|
27.9
|
1.0
|
C16
|
B:PB8394
|
3.6
|
7.1
|
1.0
|
C17
|
B:PB8394
|
3.6
|
5.4
|
1.0
|
CD1
|
B:PHE108
|
3.7
|
12.9
|
1.0
|
CD2
|
B:TYR71
|
3.7
|
17.4
|
1.0
|
CA
|
B:GLY74
|
3.8
|
28.6
|
1.0
|
C
|
B:GLN73
|
4.0
|
29.2
|
1.0
|
O
|
B:LYS107
|
4.0
|
21.4
|
1.0
|
CB
|
B:TYR71
|
4.0
|
17.1
|
1.0
|
C
|
B:GLY74
|
4.0
|
28.1
|
1.0
|
C10
|
B:PB8394
|
4.1
|
8.8
|
1.0
|
CA
|
B:PHE108
|
4.1
|
14.1
|
1.0
|
CG
|
B:TYR71
|
4.2
|
16.6
|
1.0
|
O
|
B:GLY74
|
4.3
|
28.4
|
1.0
|
CB
|
B:PHE108
|
4.4
|
13.4
|
1.0
|
N
|
B:GLY74
|
4.4
|
28.9
|
1.0
|
N
|
B:LYS75
|
4.5
|
27.1
|
1.0
|
CG
|
B:PHE108
|
4.5
|
12.6
|
1.0
|
CE1
|
B:PHE108
|
4.5
|
10.0
|
1.0
|
CE2
|
B:TYR71
|
4.7
|
13.4
|
1.0
|
O45
|
B:PB8394
|
4.7
|
11.7
|
1.0
|
C25
|
B:PB8394
|
4.7
|
11.6
|
1.0
|
F47
|
B:PB8394
|
4.8
|
4.8
|
1.0
|
O
|
B:PHE108
|
4.8
|
12.5
|
1.0
|
C32
|
B:PB8394
|
4.9
|
10.0
|
1.0
|
C
|
B:LYS107
|
4.9
|
19.7
|
1.0
|
C
|
B:PHE108
|
5.0
|
13.4
|
1.0
|
N
|
B:PHE108
|
5.0
|
18.4
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 5 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F394
b:9.0
occ:1.00
|
F47
|
D:PB8394
|
0.0
|
9.0
|
1.0
|
C17
|
D:PB8394
|
1.4
|
8.7
|
1.0
|
C10
|
D:PB8394
|
2.4
|
3.8
|
1.0
|
C12
|
D:PB8394
|
2.5
|
8.5
|
1.0
|
CD1
|
D:ILE110
|
2.9
|
28.8
|
1.0
|
CH2
|
D:TRP115
|
3.1
|
21.7
|
1.0
|
CZ2
|
D:TRP115
|
3.2
|
22.6
|
1.0
|
CD2
|
D:LEU30
|
3.4
|
18.3
|
1.0
|
C33
|
D:PB8394
|
3.5
|
17.7
|
1.0
|
C16
|
D:PB8394
|
3.6
|
5.6
|
1.0
|
C18
|
D:PB8394
|
3.7
|
8.1
|
1.0
|
O
|
D:PHE108
|
4.0
|
26.2
|
1.0
|
CG1
|
D:ILE110
|
4.2
|
28.8
|
1.0
|
C11
|
D:PB8394
|
4.2
|
5.7
|
1.0
|
CZ3
|
D:TRP115
|
4.3
|
21.2
|
1.0
|
C29
|
D:PB8394
|
4.3
|
18.8
|
1.0
|
C37
|
D:PB8394
|
4.3
|
19.3
|
1.0
|
CE2
|
D:TRP115
|
4.5
|
20.4
|
1.0
|
C30
|
D:PB8394
|
4.6
|
21.9
|
1.0
|
C24
|
D:PB8394
|
4.7
|
19.4
|
1.0
|
CG
|
D:LEU30
|
4.7
|
18.7
|
1.0
|
C27
|
D:PB8394
|
4.7
|
19.5
|
1.0
|
F48
|
D:PB8394
|
4.8
|
15.5
|
1.0
|
C32
|
D:PB8394
|
4.8
|
10.5
|
1.0
|
CD1
|
D:LEU30
|
5.0
|
15.9
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 6 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F394
b:15.5
occ:1.00
|
F48
|
D:PB8394
|
0.0
|
15.5
|
1.0
|
C18
|
D:PB8394
|
1.3
|
8.1
|
1.0
|
C12
|
D:PB8394
|
2.3
|
8.5
|
1.0
|
C11
|
D:PB8394
|
2.4
|
5.7
|
1.0
|
CD1
|
D:PHE108
|
3.0
|
26.6
|
1.0
|
O
|
D:GLN73
|
3.2
|
43.3
|
1.0
|
CD2
|
D:TYR71
|
3.6
|
20.8
|
1.0
|
CE1
|
D:PHE108
|
3.6
|
26.1
|
1.0
|
C16
|
D:PB8394
|
3.6
|
5.6
|
1.0
|
C17
|
D:PB8394
|
3.7
|
8.7
|
1.0
|
O
|
D:LYS107
|
3.7
|
33.9
|
1.0
|
CA
|
D:PHE108
|
3.7
|
27.4
|
1.0
|
CG
|
D:TYR71
|
3.9
|
23.9
|
1.0
|
CG
|
D:PHE108
|
4.0
|
26.3
|
1.0
|
CB
|
D:TYR71
|
4.0
|
26.5
|
1.0
|
O
|
D:GLY74
|
4.0
|
37.6
|
1.0
|
O
|
D:PHE108
|
4.1
|
26.2
|
1.0
|
CA
|
D:GLY74
|
4.1
|
38.6
|
1.0
|
C
|
D:GLY74
|
4.1
|
38.3
|
1.0
|
C10
|
D:PB8394
|
4.1
|
3.8
|
1.0
|
CB
|
D:PHE108
|
4.2
|
26.3
|
1.0
|
CE2
|
D:TYR71
|
4.3
|
20.4
|
1.0
|
C
|
D:GLN73
|
4.3
|
40.6
|
1.0
|
C25
|
D:PB8394
|
4.4
|
19.1
|
1.0
|
C
|
D:PHE108
|
4.4
|
26.4
|
1.0
|
C
|
D:LYS107
|
4.6
|
32.7
|
1.0
|
N
|
D:PHE108
|
4.6
|
30.9
|
1.0
|
N
|
D:GLY74
|
4.8
|
39.6
|
1.0
|
CD1
|
D:TYR71
|
4.8
|
22.1
|
1.0
|
F47
|
D:PB8394
|
4.8
|
9.0
|
1.0
|
N
|
D:LYS75
|
4.9
|
35.8
|
1.0
|
CZ
|
D:PHE108
|
4.9
|
27.4
|
1.0
|
C24
|
D:PB8394
|
4.9
|
19.4
|
1.0
|
C32
|
D:PB8394
|
5.0
|
10.5
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 7 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F394
b:6.3
occ:1.00
|
F47
|
E:PB8394
|
0.0
|
6.3
|
1.0
|
C17
|
E:PB8394
|
1.4
|
10.8
|
1.0
|
C10
|
E:PB8394
|
2.4
|
14.5
|
1.0
|
C12
|
E:PB8394
|
2.5
|
7.9
|
1.0
|
CD2
|
E:LEU30
|
3.1
|
12.4
|
1.0
|
CH2
|
E:TRP115
|
3.2
|
26.8
|
1.0
|
CZ2
|
E:TRP115
|
3.4
|
27.8
|
1.0
|
C30
|
E:PB8394
|
3.6
|
11.8
|
1.0
|
C16
|
E:PB8394
|
3.7
|
12.7
|
1.0
|
C18
|
E:PB8394
|
3.7
|
7.0
|
1.0
|
C33
|
E:PB8394
|
4.0
|
15.5
|
1.0
|
O
|
E:PHE108
|
4.1
|
26.9
|
1.0
|
CD1
|
E:ILE110
|
4.2
|
29.6
|
1.0
|
C11
|
E:PB8394
|
4.2
|
7.9
|
1.0
|
C37
|
E:PB8394
|
4.3
|
15.8
|
1.0
|
CZ3
|
E:TRP115
|
4.4
|
27.2
|
1.0
|
C24
|
E:PB8394
|
4.4
|
14.1
|
1.0
|
CG
|
E:LEU30
|
4.4
|
17.0
|
1.0
|
C29
|
E:PB8394
|
4.4
|
17.3
|
1.0
|
CD1
|
E:LEU30
|
4.6
|
18.4
|
1.0
|
C25
|
E:PB8394
|
4.6
|
12.9
|
1.0
|
CE2
|
E:TRP115
|
4.7
|
25.4
|
1.0
|
F48
|
E:PB8394
|
4.8
|
12.4
|
1.0
|
CG1
|
E:ILE110
|
4.8
|
29.8
|
1.0
|
C27
|
E:PB8394
|
4.8
|
15.0
|
1.0
|
C32
|
E:PB8394
|
4.8
|
12.3
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 3skg
Go back to
Fluorine Binding Sites List in 3skg
Fluorine binding site 8 out
of 8 in the Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Beta-Site App-Cleaving Enzyme 1 (Bace-Wt) Complex with (2S)-2-((3R)-3-Acetamido-3-Isobutyl-2-Oxo-1-Pyrrolidinyl)-N- ((1S,2R)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,4-Tetrahydro-3- Isoquinolinyl)Ethyl)-4-Phenylbutanamide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F394
b:12.4
occ:1.00
|
F48
|
E:PB8394
|
0.0
|
12.4
|
1.0
|
C18
|
E:PB8394
|
1.3
|
7.0
|
1.0
|
C11
|
E:PB8394
|
2.2
|
7.9
|
1.0
|
C12
|
E:PB8394
|
2.3
|
7.9
|
1.0
|
O
|
E:GLN73
|
2.9
|
38.5
|
1.0
|
C16
|
E:PB8394
|
3.5
|
12.7
|
1.0
|
C17
|
E:PB8394
|
3.6
|
10.8
|
1.0
|
O
|
E:LYS107
|
3.7
|
34.2
|
1.0
|
CD1
|
E:PHE108
|
3.7
|
16.4
|
1.0
|
CB
|
E:TYR71
|
3.8
|
25.7
|
1.0
|
CA
|
E:GLY74
|
3.8
|
34.4
|
1.0
|
CD2
|
E:TYR71
|
3.9
|
26.1
|
1.0
|
CA
|
E:PHE108
|
3.9
|
24.8
|
1.0
|
C
|
E:GLN73
|
3.9
|
37.6
|
1.0
|
C10
|
E:PB8394
|
3.9
|
14.5
|
1.0
|
C
|
E:GLY74
|
4.0
|
33.2
|
1.0
|
CG
|
E:TYR71
|
4.0
|
26.7
|
1.0
|
O
|
E:GLY74
|
4.1
|
31.4
|
1.0
|
N
|
E:GLY74
|
4.4
|
35.8
|
1.0
|
CE1
|
E:PHE108
|
4.4
|
16.3
|
1.0
|
C
|
E:LYS107
|
4.5
|
32.8
|
1.0
|
C25
|
E:PB8394
|
4.5
|
12.9
|
1.0
|
CG
|
E:PHE108
|
4.5
|
18.1
|
1.0
|
CB
|
E:PHE108
|
4.5
|
22.2
|
1.0
|
N
|
E:PHE108
|
4.6
|
29.5
|
1.0
|
N
|
E:LYS75
|
4.6
|
33.0
|
1.0
|
O
|
E:PHE108
|
4.6
|
26.9
|
1.0
|
CE2
|
E:TYR71
|
4.8
|
24.4
|
1.0
|
F47
|
E:PB8394
|
4.8
|
6.3
|
1.0
|
C
|
E:PHE108
|
4.8
|
25.1
|
1.0
|
C32
|
E:PB8394
|
4.8
|
12.3
|
1.0
|
CD1
|
E:TYR71
|
4.9
|
28.8
|
1.0
|
|
Reference:
L.A.Thompson,
J.Shi,
C.P.Decicco,
A.J.Tebben,
R.E.Olson,
K.M.Boy,
J.M.Guernon,
A.C.Good,
A.Liauw,
C.Zheng,
R.A.Copeland,
A.P.Combs,
G.L.Trainor,
D.M.Camac,
J.K.Muckelbauer,
K.A.Lentz,
J.E.Grace,
C.R.Burton,
J.H.Toyn,
D.M.Barten,
J.Marcinkeviciene,
J.E.Meredith,
C.F.Albright,
J.E.Macor.
Synthesis and in Vivo Evaluation of Cyclic Diaminopropane Bace-1 Inhibitors. Bioorg.Med.Chem.Lett. V. 21 6909 2011.
ISSN: ISSN 0960-894X
PubMed: 21974952
DOI: 10.1016/J.BMCL.2011.06.116
Page generated: Wed Jul 31 22:33:26 2024
|