Fluorine in PDB 3svq: Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
All present enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine:
1.14.13.39;
Protein crystallography data
The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine, PDB code: 3svq
was solved by
H.Li,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.82 /
2.18
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.751,
111.134,
164.708,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.9 /
26.2
|
Other elements in 3svq:
The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
(pdb code 3svq). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine, PDB code: 3svq:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 1 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:86.3
occ:1.00
|
F15
|
A:JK4800
|
0.0
|
86.3
|
1.0
|
C14
|
A:JK4800
|
1.3
|
83.1
|
1.0
|
F16
|
A:JK4800
|
2.1
|
84.8
|
1.0
|
C21
|
A:JK4800
|
2.3
|
79.9
|
1.0
|
C13
|
A:JK4800
|
2.3
|
83.6
|
1.0
|
OE1
|
A:GLU592
|
2.5
|
45.0
|
1.0
|
N12
|
A:JK4800
|
2.6
|
85.8
|
1.0
|
CBA
|
A:HEM750
|
2.7
|
55.1
|
1.0
|
C26
|
A:JK4800
|
2.8
|
75.1
|
1.0
|
CGA
|
A:HEM750
|
3.4
|
58.3
|
1.0
|
O2A
|
A:HEM750
|
3.5
|
59.6
|
1.0
|
C22
|
A:JK4800
|
3.5
|
77.7
|
1.0
|
CD
|
A:GLU592
|
3.6
|
45.9
|
1.0
|
C2A
|
A:HEM750
|
3.6
|
45.4
|
1.0
|
O
|
A:HOH82
|
3.7
|
44.2
|
1.0
|
C11
|
A:JK4800
|
3.8
|
88.3
|
1.0
|
C1A
|
A:HEM750
|
3.8
|
45.6
|
1.0
|
CAA
|
A:HEM750
|
3.8
|
51.3
|
1.0
|
C3A
|
A:HEM750
|
3.9
|
46.2
|
1.0
|
F22
|
A:JK4800
|
4.0
|
77.3
|
1.0
|
C25
|
A:JK4800
|
4.1
|
73.4
|
1.0
|
OE2
|
A:GLU592
|
4.2
|
42.1
|
1.0
|
CHA
|
A:HEM750
|
4.3
|
46.9
|
1.0
|
C4A
|
A:HEM750
|
4.3
|
45.9
|
1.0
|
NA
|
A:HEM750
|
4.3
|
45.8
|
1.0
|
O1A
|
A:HEM750
|
4.4
|
57.6
|
1.0
|
CMA
|
A:HEM750
|
4.5
|
47.5
|
1.0
|
C23
|
A:JK4800
|
4.6
|
76.7
|
1.0
|
CG
|
A:GLU592
|
4.6
|
42.4
|
1.0
|
C10
|
A:JK4800
|
4.7
|
90.5
|
1.0
|
O09
|
A:JK4800
|
4.8
|
92.9
|
1.0
|
C24
|
A:JK4800
|
4.9
|
76.3
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 2 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:84.8
occ:1.00
|
F16
|
A:JK4800
|
0.0
|
84.8
|
1.0
|
C14
|
A:JK4800
|
1.3
|
83.1
|
1.0
|
F15
|
A:JK4800
|
2.1
|
86.3
|
1.0
|
C13
|
A:JK4800
|
2.3
|
83.6
|
1.0
|
C21
|
A:JK4800
|
2.4
|
79.9
|
1.0
|
F22
|
A:JK4800
|
2.6
|
77.3
|
1.0
|
C22
|
A:JK4800
|
2.8
|
77.7
|
1.0
|
N12
|
A:JK4800
|
2.8
|
85.8
|
1.0
|
CG2
|
A:VAL567
|
3.3
|
36.5
|
1.0
|
C11
|
A:JK4800
|
3.3
|
88.3
|
1.0
|
C26
|
A:JK4800
|
3.6
|
75.1
|
1.0
|
CBA
|
A:HEM750
|
3.8
|
55.1
|
1.0
|
CHA
|
A:HEM750
|
4.0
|
46.9
|
1.0
|
C23
|
A:JK4800
|
4.1
|
76.7
|
1.0
|
C1A
|
A:HEM750
|
4.1
|
45.6
|
1.0
|
C4D
|
A:HEM750
|
4.3
|
48.3
|
1.0
|
OE1
|
A:GLU592
|
4.4
|
45.0
|
1.0
|
O2A
|
A:HEM750
|
4.4
|
59.6
|
1.0
|
NA
|
A:HEM750
|
4.6
|
45.8
|
1.0
|
C2A
|
A:HEM750
|
4.6
|
45.4
|
1.0
|
C10
|
A:JK4800
|
4.6
|
90.5
|
1.0
|
CGA
|
A:HEM750
|
4.7
|
58.3
|
1.0
|
ND
|
A:HEM750
|
4.7
|
43.9
|
1.0
|
CBD
|
A:HEM750
|
4.7
|
55.7
|
1.0
|
CB
|
A:VAL567
|
4.7
|
43.6
|
1.0
|
C25
|
A:JK4800
|
4.8
|
73.4
|
1.0
|
O09
|
A:JK4800
|
4.8
|
92.9
|
1.0
|
F23
|
A:JK4800
|
4.8
|
79.9
|
1.0
|
C3D
|
A:HEM750
|
4.8
|
47.5
|
1.0
|
C24
|
A:JK4800
|
4.9
|
76.3
|
1.0
|
CAA
|
A:HEM750
|
4.9
|
51.3
|
1.0
|
FE
|
A:HEM750
|
5.0
|
43.7
|
1.0
|
O
|
A:HOH82
|
5.0
|
44.2
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 3 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:77.3
occ:1.00
|
F22
|
A:JK4800
|
0.0
|
77.3
|
1.0
|
C22
|
A:JK4800
|
1.3
|
77.7
|
1.0
|
C23
|
A:JK4800
|
2.2
|
76.7
|
1.0
|
C21
|
A:JK4800
|
2.4
|
79.9
|
1.0
|
F23
|
A:JK4800
|
2.4
|
79.9
|
1.0
|
F16
|
A:JK4800
|
2.6
|
84.8
|
1.0
|
C14
|
A:JK4800
|
2.9
|
83.1
|
1.0
|
CG2
|
A:VAL567
|
3.0
|
36.5
|
1.0
|
C13
|
A:JK4800
|
3.5
|
83.6
|
1.0
|
C24
|
A:JK4800
|
3.5
|
76.3
|
1.0
|
C26
|
A:JK4800
|
3.6
|
75.1
|
1.0
|
CE1
|
A:PHE584
|
3.9
|
43.6
|
1.0
|
F15
|
A:JK4800
|
4.0
|
86.3
|
1.0
|
CB
|
A:VAL567
|
4.1
|
43.6
|
1.0
|
C25
|
A:JK4800
|
4.1
|
73.4
|
1.0
|
FE
|
A:HEM750
|
4.5
|
43.7
|
1.0
|
CD1
|
A:PHE584
|
4.5
|
40.5
|
1.0
|
N
|
A:VAL567
|
4.5
|
43.0
|
1.0
|
O
|
A:PRO565
|
4.5
|
42.2
|
1.0
|
NC
|
A:HEM750
|
4.5
|
41.1
|
1.0
|
ND
|
A:HEM750
|
4.7
|
43.9
|
1.0
|
N12
|
A:JK4800
|
4.7
|
85.8
|
1.0
|
CB
|
A:PRO565
|
4.8
|
40.6
|
1.0
|
C
|
A:PRO565
|
4.8
|
41.5
|
1.0
|
C1C
|
A:HEM750
|
4.8
|
42.6
|
1.0
|
CA
|
A:VAL567
|
4.9
|
43.5
|
1.0
|
CZ
|
A:PHE584
|
4.9
|
37.0
|
1.0
|
NB
|
A:HEM750
|
4.9
|
42.8
|
1.0
|
N
|
A:ALA566
|
4.9
|
42.9
|
1.0
|
C4C
|
A:HEM750
|
5.0
|
40.7
|
1.0
|
O
|
A:PHE584
|
5.0
|
40.1
|
1.0
|
C4D
|
A:HEM750
|
5.0
|
48.3
|
1.0
|
C1D
|
A:HEM750
|
5.0
|
46.1
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 4 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F800
b:79.9
occ:1.00
|
F23
|
A:JK4800
|
0.0
|
79.9
|
1.0
|
C23
|
A:JK4800
|
1.4
|
76.7
|
1.0
|
C22
|
A:JK4800
|
2.3
|
77.7
|
1.0
|
F22
|
A:JK4800
|
2.4
|
77.3
|
1.0
|
C24
|
A:JK4800
|
2.5
|
76.3
|
1.0
|
N
|
A:GLY586
|
3.1
|
42.0
|
1.0
|
CHC
|
A:HEM750
|
3.3
|
43.6
|
1.0
|
C1C
|
A:HEM750
|
3.3
|
42.6
|
1.0
|
C21
|
A:JK4800
|
3.6
|
79.9
|
1.0
|
C
|
A:SER585
|
3.7
|
40.5
|
1.0
|
C25
|
A:JK4800
|
3.7
|
73.4
|
1.0
|
O
|
A:PRO565
|
3.7
|
42.2
|
1.0
|
C4B
|
A:HEM750
|
3.8
|
43.3
|
1.0
|
NC
|
A:HEM750
|
3.8
|
41.1
|
1.0
|
CA
|
A:GLY586
|
3.8
|
42.1
|
1.0
|
CA
|
A:SER585
|
3.9
|
39.8
|
1.0
|
C2C
|
A:HEM750
|
4.0
|
43.4
|
1.0
|
NB
|
A:HEM750
|
4.1
|
42.8
|
1.0
|
C26
|
A:JK4800
|
4.1
|
75.1
|
1.0
|
CD1
|
A:PHE584
|
4.3
|
40.5
|
1.0
|
FE
|
A:HEM750
|
4.4
|
43.7
|
1.0
|
CE1
|
A:PHE584
|
4.4
|
43.6
|
1.0
|
O
|
A:SER585
|
4.5
|
40.1
|
1.0
|
C4C
|
A:HEM750
|
4.5
|
40.7
|
1.0
|
CMC
|
A:HEM750
|
4.5
|
39.2
|
1.0
|
N
|
A:SER585
|
4.5
|
38.5
|
1.0
|
C3C
|
A:HEM750
|
4.6
|
40.0
|
1.0
|
C
|
A:PRO565
|
4.6
|
41.5
|
1.0
|
CG
|
A:PRO565
|
4.6
|
39.8
|
1.0
|
C
|
A:GLY586
|
4.6
|
43.6
|
1.0
|
C3B
|
A:HEM750
|
4.6
|
43.3
|
1.0
|
O
|
A:PHE584
|
4.7
|
40.1
|
1.0
|
CB
|
A:PRO565
|
4.7
|
40.6
|
1.0
|
C14
|
A:JK4800
|
4.7
|
83.1
|
1.0
|
N
|
A:TRP587
|
4.7
|
42.8
|
1.0
|
F16
|
A:JK4800
|
4.8
|
84.8
|
1.0
|
C
|
A:PHE584
|
4.9
|
39.1
|
1.0
|
C1B
|
A:HEM750
|
4.9
|
44.6
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 5 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:78.8
occ:1.00
|
F15
|
B:JK4800
|
0.0
|
78.8
|
1.0
|
C14
|
B:JK4800
|
1.3
|
73.2
|
1.0
|
F16
|
B:JK4800
|
2.1
|
73.2
|
1.0
|
C21
|
B:JK4800
|
2.3
|
68.3
|
1.0
|
C13
|
B:JK4800
|
2.3
|
71.4
|
1.0
|
CBA
|
B:HEM750
|
2.5
|
52.2
|
1.0
|
OE1
|
B:GLU592
|
2.7
|
46.0
|
1.0
|
C26
|
B:JK4800
|
2.7
|
64.7
|
1.0
|
N12
|
B:JK4800
|
2.8
|
72.3
|
1.0
|
O2A
|
B:HEM750
|
3.0
|
59.3
|
1.0
|
CGA
|
B:HEM750
|
3.2
|
55.3
|
1.0
|
C2A
|
B:HEM750
|
3.3
|
44.6
|
1.0
|
O
|
B:HOH19
|
3.4
|
48.9
|
1.0
|
CAA
|
B:HEM750
|
3.5
|
51.1
|
1.0
|
C22
|
B:JK4800
|
3.6
|
67.8
|
1.0
|
C1A
|
B:HEM750
|
3.7
|
47.0
|
1.0
|
C3A
|
B:HEM750
|
3.7
|
45.1
|
1.0
|
CD
|
B:GLU592
|
3.8
|
46.3
|
1.0
|
C25
|
B:JK4800
|
4.1
|
61.6
|
1.0
|
CHA
|
B:HEM750
|
4.2
|
45.2
|
1.0
|
F22
|
B:JK4800
|
4.2
|
72.6
|
1.0
|
C11
|
B:JK4800
|
4.2
|
73.4
|
1.0
|
C4A
|
B:HEM750
|
4.3
|
45.1
|
1.0
|
CMA
|
B:HEM750
|
4.3
|
43.8
|
1.0
|
NA
|
B:HEM750
|
4.3
|
45.5
|
1.0
|
O1A
|
B:HEM750
|
4.4
|
57.3
|
1.0
|
OE2
|
B:GLU592
|
4.4
|
40.9
|
1.0
|
C23
|
B:JK4800
|
4.7
|
64.8
|
1.0
|
CG
|
B:GLU592
|
4.7
|
43.0
|
1.0
|
C24
|
B:JK4800
|
4.9
|
64.5
|
1.0
|
C4D
|
B:HEM750
|
4.9
|
46.2
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 6 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:73.2
occ:1.00
|
F16
|
B:JK4800
|
0.0
|
73.2
|
1.0
|
C14
|
B:JK4800
|
1.3
|
73.2
|
1.0
|
F15
|
B:JK4800
|
2.1
|
78.8
|
1.0
|
C13
|
B:JK4800
|
2.4
|
71.4
|
1.0
|
C21
|
B:JK4800
|
2.4
|
68.3
|
1.0
|
F22
|
B:JK4800
|
2.8
|
72.6
|
1.0
|
N12
|
B:JK4800
|
2.8
|
72.3
|
1.0
|
C22
|
B:JK4800
|
2.9
|
67.8
|
1.0
|
CG2
|
B:VAL567
|
3.5
|
38.3
|
1.0
|
C26
|
B:JK4800
|
3.6
|
64.7
|
1.0
|
CHA
|
B:HEM750
|
3.8
|
45.2
|
1.0
|
C1A
|
B:HEM750
|
3.9
|
47.0
|
1.0
|
O2A
|
B:HEM750
|
3.9
|
59.3
|
1.0
|
C4D
|
B:HEM750
|
4.0
|
46.2
|
1.0
|
CBA
|
B:HEM750
|
4.0
|
52.2
|
1.0
|
C11
|
B:JK4800
|
4.0
|
73.4
|
1.0
|
C23
|
B:JK4800
|
4.2
|
64.8
|
1.0
|
C2A
|
B:HEM750
|
4.3
|
44.6
|
1.0
|
ND
|
B:HEM750
|
4.4
|
41.8
|
1.0
|
CBD
|
B:HEM750
|
4.4
|
51.1
|
1.0
|
CGA
|
B:HEM750
|
4.5
|
55.3
|
1.0
|
NA
|
B:HEM750
|
4.5
|
45.5
|
1.0
|
C3D
|
B:HEM750
|
4.5
|
46.3
|
1.0
|
CAA
|
B:HEM750
|
4.5
|
51.1
|
1.0
|
OE1
|
B:GLU592
|
4.6
|
46.0
|
1.0
|
C25
|
B:JK4800
|
4.8
|
61.6
|
1.0
|
FE
|
B:HEM750
|
4.9
|
43.0
|
1.0
|
F23
|
B:JK4800
|
4.9
|
64.1
|
1.0
|
CB
|
B:VAL567
|
4.9
|
40.9
|
1.0
|
C3A
|
B:HEM750
|
4.9
|
45.1
|
1.0
|
O
|
B:HOH19
|
4.9
|
48.9
|
1.0
|
C24
|
B:JK4800
|
5.0
|
64.5
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 7 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:72.6
occ:1.00
|
F22
|
B:JK4800
|
0.0
|
72.6
|
1.0
|
C22
|
B:JK4800
|
1.3
|
67.8
|
1.0
|
C23
|
B:JK4800
|
2.2
|
64.8
|
1.0
|
F23
|
B:JK4800
|
2.4
|
64.1
|
1.0
|
C21
|
B:JK4800
|
2.4
|
68.3
|
1.0
|
F16
|
B:JK4800
|
2.8
|
73.2
|
1.0
|
C14
|
B:JK4800
|
3.0
|
73.2
|
1.0
|
CG2
|
B:VAL567
|
3.3
|
38.3
|
1.0
|
C24
|
B:JK4800
|
3.5
|
64.5
|
1.0
|
C13
|
B:JK4800
|
3.6
|
71.4
|
1.0
|
C26
|
B:JK4800
|
3.6
|
64.7
|
1.0
|
CE1
|
B:PHE584
|
3.7
|
39.8
|
1.0
|
C25
|
B:JK4800
|
4.1
|
61.6
|
1.0
|
CB
|
B:VAL567
|
4.2
|
40.9
|
1.0
|
F15
|
B:JK4800
|
4.2
|
78.8
|
1.0
|
CD1
|
B:PHE584
|
4.2
|
35.7
|
1.0
|
FE
|
B:HEM750
|
4.5
|
43.0
|
1.0
|
NC
|
B:HEM750
|
4.5
|
45.4
|
1.0
|
N
|
B:VAL567
|
4.5
|
40.3
|
1.0
|
CZ
|
B:PHE584
|
4.6
|
41.3
|
1.0
|
ND
|
B:HEM750
|
4.6
|
41.8
|
1.0
|
O
|
B:PRO565
|
4.7
|
38.1
|
1.0
|
N12
|
B:JK4800
|
4.7
|
72.3
|
1.0
|
C4C
|
B:HEM750
|
4.8
|
43.4
|
1.0
|
C1C
|
B:HEM750
|
4.9
|
44.0
|
1.0
|
C1D
|
B:HEM750
|
4.9
|
42.8
|
1.0
|
C
|
B:PRO565
|
5.0
|
39.8
|
1.0
|
C4D
|
B:HEM750
|
5.0
|
46.2
|
1.0
|
CB
|
B:PRO565
|
5.0
|
39.1
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 3svq
Go back to
Fluorine Binding Sites List in 3svq
Fluorine binding site 8 out
of 8 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((3R,4R)-4-(2-((2,2-Difluoro-2-(2,3-Difluorophenyl)Ethyl) Amino)Ethoxy)Pyrrolidin-3-Yl)Methyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F800
b:64.1
occ:1.00
|
F23
|
B:JK4800
|
0.0
|
64.1
|
1.0
|
C23
|
B:JK4800
|
1.3
|
64.8
|
1.0
|
C22
|
B:JK4800
|
2.2
|
67.8
|
1.0
|
F22
|
B:JK4800
|
2.4
|
72.6
|
1.0
|
C24
|
B:JK4800
|
2.4
|
64.5
|
1.0
|
N
|
B:GLY586
|
3.2
|
38.5
|
1.0
|
C21
|
B:JK4800
|
3.5
|
68.3
|
1.0
|
C1C
|
B:HEM750
|
3.6
|
44.0
|
1.0
|
CHC
|
B:HEM750
|
3.6
|
43.9
|
1.0
|
C25
|
B:JK4800
|
3.7
|
61.6
|
1.0
|
C
|
B:SER585
|
3.7
|
37.9
|
1.0
|
O
|
B:PRO565
|
3.8
|
38.1
|
1.0
|
C4B
|
B:HEM750
|
3.8
|
45.3
|
1.0
|
CA
|
B:SER585
|
3.9
|
37.5
|
1.0
|
CA
|
B:GLY586
|
3.9
|
39.6
|
1.0
|
NC
|
B:HEM750
|
4.0
|
45.4
|
1.0
|
C26
|
B:JK4800
|
4.0
|
64.7
|
1.0
|
C2C
|
B:HEM750
|
4.1
|
45.2
|
1.0
|
NB
|
B:HEM750
|
4.3
|
44.0
|
1.0
|
CD1
|
B:PHE584
|
4.3
|
35.7
|
1.0
|
CE1
|
B:PHE584
|
4.4
|
39.8
|
1.0
|
C3B
|
B:HEM750
|
4.4
|
45.0
|
1.0
|
FE
|
B:HEM750
|
4.5
|
43.0
|
1.0
|
C4C
|
B:HEM750
|
4.5
|
43.4
|
1.0
|
CG
|
B:PRO565
|
4.6
|
40.4
|
1.0
|
O
|
B:SER585
|
4.6
|
37.2
|
1.0
|
N
|
B:SER585
|
4.6
|
36.3
|
1.0
|
CMC
|
B:HEM750
|
4.6
|
47.9
|
1.0
|
C3C
|
B:HEM750
|
4.6
|
42.9
|
1.0
|
C
|
B:PRO565
|
4.6
|
39.8
|
1.0
|
C
|
B:GLY586
|
4.7
|
40.7
|
1.0
|
CB
|
B:PRO565
|
4.7
|
39.1
|
1.0
|
O
|
B:PHE584
|
4.8
|
34.0
|
1.0
|
C14
|
B:JK4800
|
4.8
|
73.2
|
1.0
|
N
|
B:TRP587
|
4.8
|
40.3
|
1.0
|
F16
|
B:JK4800
|
4.9
|
73.2
|
1.0
|
CAB
|
B:HEM750
|
4.9
|
47.9
|
1.0
|
C
|
B:PHE584
|
5.0
|
36.9
|
1.0
|
C1B
|
B:HEM750
|
5.0
|
44.0
|
1.0
|
|
Reference:
F.Xue,
J.M.Kraus,
K.J.Labby,
H.Ji,
J.Mataka,
G.Xia,
H.Li,
S.L.Delker,
L.J.Roman,
P.Martasek,
T.L.Poulos,
R.B.Silverman.
Improved Synthesis of Chiral Pyrrolidine Inhibitors and Their Binding Properties to Neuronal Nitric Oxide Synthase. J.Med.Chem. V. 54 6399 2011.
ISSN: ISSN 0022-2623
PubMed: 21809851
DOI: 10.1021/JM200411J
Page generated: Wed Jul 31 22:38:38 2024
|