Atomistry » Fluorine » PDB 3sb0-3sym » 3sw6
Atomistry »
  Fluorine »
    PDB 3sb0-3sym »
      3sw6 »

Fluorine in PDB 3sw6: Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump

Enzymatic activity of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump

All present enzymatic activity of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump:
4.1.1.23;

Protein crystallography data

The structure of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump, PDB code: 3sw6 was solved by Y.Liu, L.P.Kotra, E.F.Pai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 58.118, 103.370, 73.920, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 18.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump (pdb code 3sw6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump, PDB code: 3sw6:

Fluorine binding site 1 out of 1 in 3sw6

Go back to Fluorine Binding Sites List in 3sw6
Fluorine binding site 1 out of 1 in the Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Azido-Ump within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1000

b:11.8
occ:1.00
 F5 A:5FU1000 0.0 11.8 1.0
C5 A:5FU1000 1.4 9.8 1.0
C4 A:5FU1000 2.4 7.5 1.0
C6 A:5FU1000 2.4 8.7 1.0
O4 A:5FU1000 2.7 9.3 1.0
CE A:LYS72 2.8 10.5 1.0
NZ A:LYS72 2.8 9.8 1.0
CD2 A:LEU123 3.1 8.6 1.0
CD A:LYS72 3.3 10.1 1.0
CD1 A:LEU123 3.4 9.0 1.0
CG A:MET126 3.6 7.7 1.0
N3 A:5FU1000 3.6 7.2 1.0
N1 A:5FU1000 3.6 7.3 1.0
CE A:MET126 3.7 9.6 1.0
CG A:LEU123 3.9 6.2 1.0
C2 A:5FU1000 4.0 8.8 1.0
SD A:MET126 4.2 9.3 1.0
CG A:LYS72 4.3 11.1 1.0
CB A:MET126 4.4 8.1 1.0
O A:HOH273 4.5 15.6 1.0
CA A:MET126 4.7 8.2 1.0
C1' A:5FU1000 4.8 7.2 1.0
O A:HOH249 4.8 9.9 1.0

Reference:

Y.Liu, L.P.Kotra, E.F.Pai. Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6-Azido-Ump To Be Published.
Page generated: Wed Jul 31 22:38:57 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy