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Fluorine in PDB 3uqw: Crystal Structure of BACE1 with Its Inhibitor

Enzymatic activity of Crystal Structure of BACE1 with Its Inhibitor

All present enzymatic activity of Crystal Structure of BACE1 with Its Inhibitor:
3.4.23.46;

Protein crystallography data

The structure of Crystal Structure of BACE1 with Its Inhibitor, PDB code: 3uqw was solved by T.T.Chen, W.Y.Chen, Y.C.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.75 / 2.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 107.315, 131.544, 78.541, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 21.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of BACE1 with Its Inhibitor (pdb code 3uqw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of BACE1 with Its Inhibitor, PDB code: 3uqw:

Fluorine binding site 1 out of 1 in 3uqw

Go back to Fluorine Binding Sites List in 3uqw
Fluorine binding site 1 out of 1 in the Crystal Structure of BACE1 with Its Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of BACE1 with Its Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F394

b:35.5
occ:1.00
FAK A:ZPY394 0.0 35.5 1.0
CBJ A:ZPY394 1.4 36.1 1.0
CAR A:ZPY394 2.4 32.5 1.0
CAQ A:ZPY394 2.5 28.3 1.0
CB A:ALA335 3.4 27.4 1.0
O A:HOH479 3.5 34.6 1.0
CE1 A:TYR14 3.6 25.7 1.0
CAT A:ZPY394 3.6 32.4 1.0
CAS A:ZPY394 3.8 31.3 1.0
NH2 A:ARG307 3.9 50.2 1.0
CD1 A:TYR14 4.0 21.1 1.0
NH1 A:ARG307 4.1 44.6 1.0
OE1 A:GLU339 4.2 33.6 1.0
CBO A:ZPY394 4.2 30.0 1.0
CZ A:ARG307 4.3 54.7 1.0
N A:GLY13 4.6 28.9 1.0
O A:GLY11 4.6 67.4 1.0
CZ A:TYR14 4.7 29.6 1.0
CA A:GLY13 4.8 30.8 1.0
OG1 A:THR232 4.8 30.3 1.0
CA A:THR232 4.8 22.7 1.0
CG2 A:THR232 4.9 26.7 1.0
CA A:ALA335 4.9 24.6 1.0
OH A:TYR14 5.0 27.6 1.0

Reference:

Y.C.Xu, W.Y.Chen, T.T.Chen. Flexibility of the Flap in the Active Site of BACE1 As Revealed By Crystal Structures and Md Simulations To Be Published.
Page generated: Wed Jul 31 23:07:41 2024

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