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Fluorine in PDB 3v8t: Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477

Enzymatic activity of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477

All present enzymatic activity of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477, PDB code: 3v8t was solved by L.R.Mclean, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.28 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.702, 69.684, 68.224, 90.00, 107.78, 90.00
R / Rfree (%) 22 / 24.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477 (pdb code 3v8t). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477, PDB code: 3v8t:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 3v8t

Go back to Fluorine Binding Sites List in 3v8t
Fluorine binding site 1 out of 4 in the Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F701

b:0.1
occ:1.00
FAZ A:477701 0.0 0.1 1.0
CAV A:477701 1.4 28.8 1.0
FAY A:477701 2.3 54.4 1.0
CAP A:477701 2.4 29.7 1.0
CAQ A:477701 2.8 17.5 1.0
CZ A:PHE435 2.9 19.5 1.0
CE1 A:PHE435 3.0 20.5 1.0
CE2 A:PHE435 3.1 21.5 1.0
OG A:SER499 3.2 33.3 1.0
CD1 A:PHE435 3.3 19.7 1.0
CD2 A:PHE435 3.4 18.7 1.0
CG A:PHE435 3.5 17.0 1.0
OD2 A:ASP500 3.8 48.6 1.0
SAO A:477701 4.0 22.4 1.0
CAM A:477701 4.1 17.8 1.0
CD A:LYS391 4.4 41.8 1.0
CG A:ASP500 4.6 42.1 1.0
CB A:PHE435 4.6 15.8 1.0
CB A:SER499 4.6 23.6 1.0
OD1 A:ASP500 4.7 44.0 1.0
CAN A:477701 4.8 16.9 1.0
CD1 A:LEU489 4.9 17.6 1.0
CG1 A:VAL419 4.9 15.8 1.0

Fluorine binding site 2 out of 4 in 3v8t

Go back to Fluorine Binding Sites List in 3v8t
Fluorine binding site 2 out of 4 in the Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F701

b:54.4
occ:1.00
FAY A:477701 0.0 54.4 1.0
CAV A:477701 1.4 28.8 1.0
FAZ A:477701 2.3 0.1 1.0
CAP A:477701 2.4 29.7 1.0
CD A:LYS391 3.1 41.8 1.0
SAO A:477701 3.3 22.4 1.0
CAQ A:477701 3.5 17.5 1.0
CG A:LYS391 3.5 33.8 1.0
CB A:LYS391 3.7 21.7 1.0
CE1 A:PHE435 3.7 20.5 1.0
CG2 A:VAL377 3.9 26.2 1.0
CE A:LYS391 3.9 51.3 1.0
CD1 A:PHE435 4.0 19.7 1.0
CZ A:PHE435 4.3 19.5 1.0
NZ A:LYS391 4.3 60.4 1.0
OD2 A:ASP500 4.4 48.6 1.0
CAM A:477701 4.5 17.8 1.0
CAN A:477701 4.6 16.9 1.0
CG A:PHE435 4.7 17.0 1.0
CG1 A:VAL377 4.9 26.1 1.0
CA A:LYS391 4.9 19.3 1.0
CE2 A:PHE435 4.9 21.5 1.0
OG A:SER499 5.0 33.3 1.0

Fluorine binding site 3 out of 4 in 3v8t

Go back to Fluorine Binding Sites List in 3v8t
Fluorine binding site 3 out of 4 in the Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F701

b:0.2
occ:1.00
FAZ B:477701 0.0 0.2 1.0
CAV B:477701 1.4 35.3 1.0
FAY B:477701 2.3 48.8 1.0
CAP B:477701 2.4 23.1 1.0
CAQ B:477701 2.8 18.6 1.0
CZ B:PHE435 2.9 22.4 1.0
CE1 B:PHE435 3.0 23.2 1.0
CE2 B:PHE435 3.1 24.4 1.0
OG B:SER499 3.2 32.8 1.0
CD1 B:PHE435 3.4 22.5 1.0
CD2 B:PHE435 3.4 21.8 1.0
CG B:PHE435 3.5 19.7 1.0
OD2 B:ASP500 3.9 51.7 1.0
SAO B:477701 4.0 23.1 1.0
CAM B:477701 4.1 17.4 1.0
CD B:LYS391 4.3 49.6 1.0
CB B:PHE435 4.6 18.5 1.0
O B:HOH936 4.6 52.9 1.0
CG B:ASP500 4.6 44.7 1.0
CB B:SER499 4.6 24.6 1.0
OD1 B:ASP500 4.7 46.4 1.0
CAN B:477701 4.8 16.5 1.0
CG1 B:VAL419 4.8 16.7 1.0
CD1 B:LEU489 4.9 17.6 1.0
NZ B:LYS391 5.0 70.6 1.0

Fluorine binding site 4 out of 4 in 3v8t

Go back to Fluorine Binding Sites List in 3v8t
Fluorine binding site 4 out of 4 in the Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 477 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F701

b:48.8
occ:1.00
FAY B:477701 0.0 48.8 1.0
CAV B:477701 1.4 35.3 1.0
FAZ B:477701 2.3 0.2 1.0
CAP B:477701 2.4 23.1 1.0
CD B:LYS391 2.9 49.6 1.0
SAO B:477701 3.3 23.1 1.0
CB B:LYS391 3.4 26.4 1.0
CAQ B:477701 3.4 18.6 1.0
CG B:LYS391 3.4 39.3 1.0
CE1 B:PHE435 3.4 23.2 1.0
CD1 B:PHE435 3.6 22.5 1.0
CE B:LYS391 3.9 61.2 1.0
CZ B:PHE435 4.0 22.4 1.0
CG2 B:VAL377 4.1 30.6 1.0
NZ B:LYS391 4.3 70.6 1.0
CG B:PHE435 4.4 19.7 1.0
CAM B:477701 4.5 17.4 1.0
CAN B:477701 4.6 16.5 1.0
CA B:LYS391 4.6 24.1 1.0
OD2 B:ASP500 4.6 51.7 1.0
CE2 B:PHE435 4.7 24.4 1.0
CG1 B:VAL377 4.8 30.6 1.0
CD2 B:PHE435 4.9 21.8 1.0

Reference:

L.R.Mclean, Y.Zhang, N.Zaidi, X.Bi, R.Wang, R.Dharanipragada, J.G.Jurcak, T.A.Gillespy, Z.Zhao, K.Y.Musick, Y.M.Choi, M.Barrague, J.Peppard, M.Smicker, M.Duguid, A.Parkar, J.Fordham, D.Kominos. X-Ray Crystallographic Structure-Based Design of Selective Thienopyrazole Inhibitors For Interleukin-2-Inducible Tyrosine Kinase. Bioorg.Med.Chem.Lett. V. 22 3296 2012.
ISSN: ISSN 0960-894X
PubMed: 22464456
DOI: 10.1016/J.BMCL.2012.03.016
Page generated: Wed Jul 31 23:14:25 2024

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