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Fluorine in PDB 3vob: Staphylococcus Aureus Ftsz with PC190723

Protein crystallography data

The structure of Staphylococcus Aureus Ftsz with PC190723, PDB code: 3vob was solved by J.Yamane, T.Matsui, N.Mogi, H.Yamaguchi, H.Takemoto, M.Yao, I.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.35 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.095, 50.507, 88.288, 90.00, 110.95, 90.00
R / Rfree (%) 19.5 / 24.7

Other elements in 3vob:

The structure of Staphylococcus Aureus Ftsz with PC190723 also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Staphylococcus Aureus Ftsz with PC190723 (pdb code 3vob). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Staphylococcus Aureus Ftsz with PC190723, PDB code: 3vob:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 3vob

Go back to Fluorine Binding Sites List in 3vob
Fluorine binding site 1 out of 2 in the Staphylococcus Aureus Ftsz with PC190723


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Staphylococcus Aureus Ftsz with PC190723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:29.3
occ:1.00
F1 A:9PC403 0.0 29.3 1.0
C13 A:9PC403 1.3 26.5 1.0
C1 A:9PC403 2.4 30.7 1.0
C5 A:9PC403 2.4 28.4 1.0
O1 A:9PC403 2.8 31.6 1.0
C A:9PC403 2.9 31.8 1.0
CD1 A:LEU209 3.1 22.4 1.0
CG A:ASN263 3.1 26.3 1.0
CB A:ASN263 3.2 21.1 1.0
OD1 A:ASN263 3.2 26.4 1.0
N A:9PC403 3.3 26.2 1.0
CD1 A:LEU200 3.4 26.9 1.0
CG A:LEU200 3.6 27.4 1.0
O A:9PC403 3.7 29.6 1.0
C4 A:9PC403 3.7 28.2 1.0
ND2 A:ASN263 3.7 27.4 1.0
CB A:LEU209 3.7 23.6 1.0
CG A:LEU209 3.7 21.5 1.0
C2 A:9PC403 3.8 31.2 1.0
CB A:LEU200 4.0 25.2 1.0
C3 A:9PC403 4.2 29.2 1.0
C6 A:9PC403 4.2 32.5 1.0
CA A:LEU200 4.4 26.7 1.0
CA A:ASN263 4.6 19.0 1.0
S A:9PC403 4.7 35.9 1.0
CA A:LEU209 4.8 23.7 1.0
N A:LEU209 4.9 25.0 1.0
F A:9PC403 4.9 31.7 1.0
CD2 A:LEU261 4.9 18.1 1.0
CG2 A:VAL297 5.0 26.7 1.0
C7 A:9PC403 5.0 34.5 1.0

Fluorine binding site 2 out of 2 in 3vob

Go back to Fluorine Binding Sites List in 3vob
Fluorine binding site 2 out of 2 in the Staphylococcus Aureus Ftsz with PC190723


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Staphylococcus Aureus Ftsz with PC190723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:31.7
occ:1.00
F A:9PC403 0.0 31.7 1.0
C2 A:9PC403 1.3 31.2 1.0
C3 A:9PC403 2.4 29.2 1.0
C1 A:9PC403 2.5 30.7 1.0
C A:9PC403 3.0 31.8 1.0
O A:VAL203 3.3 28.7 1.0
O A:9PC403 3.4 29.6 1.0
CG2 A:VAL297 3.5 26.7 1.0
CB A:VAL203 3.5 27.1 1.0
N A:GLY205 3.5 24.1 1.0
CG1 A:VAL297 3.6 28.2 1.0
C4 A:9PC403 3.7 28.2 1.0
CG1 A:VAL203 3.7 17.1 1.0
N A:9PC403 3.8 26.2 1.0
CA A:GLY205 3.8 25.9 1.0
C13 A:9PC403 3.8 26.5 1.0
C A:VAL203 3.8 26.9 1.0
CB A:VAL297 4.2 29.5 1.0
CA A:VAL203 4.2 25.7 1.0
C5 A:9PC403 4.2 28.4 1.0
C A:SER204 4.2 22.8 1.0
CA A:CA401 4.4 40.5 1.0
O A:LEU200 4.4 27.3 1.0
N A:SER204 4.5 25.2 1.0
CG2 A:VAL203 4.7 23.1 1.0
O A:ASP199 4.7 26.6 1.0
CA A:LEU200 4.7 26.7 1.0
CA A:SER204 4.7 21.3 1.0
OD1 A:ASN208 4.7 22.6 1.0
N A:VAL203 4.8 23.6 1.0
F1 A:9PC403 4.9 29.3 1.0
O A:SER204 4.9 25.4 1.0

Reference:

T.Matsui, J.Yamane, N.Mogi, H.Yamaguchi, H.Takemoto, M.Yao, I.Tanaka. Structural Reorganization of the Bacterial Cell-Division Protein Ftsz From Staphylococcus Aureus Acta Crystallogr.,Sect.D V. 68 1175 2012.
ISSN: ISSN 0907-4449
PubMed: 22948918
DOI: 10.1107/S0907444912022640
Page generated: Sun Dec 13 11:57:07 2020

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