Atomistry » Fluorine » PDB 3vrs-3wyk » 3w2n
Atomistry »
  Fluorine »
    PDB 3vrs-3wyk »
      3w2n »

Fluorine in PDB 3w2n: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185, PDB code: 3w2n was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.06 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.123, 71.886, 128.940, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 19.4

Other elements in 3w2n:

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 (pdb code 3w2n). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185, PDB code: 3w2n:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 3w2n

Go back to Fluorine Binding Sites List in 3w2n
Fluorine binding site 1 out of 6 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:12.4
occ:1.00
 FAF A:ROD401 0.0 12.4 1.0
CAW A:ROD401 1.3 13.7 1.0
FAE A:ROD401 2.2 14.0 1.0
FAG A:ROD401 2.2 14.2 1.0
CAR A:ROD401 2.3 12.1 1.0
CAQ A:ROD401 2.9 11.6 1.0
OAD A:ROD401 2.9 9.0 1.0
CAL A:ROD401 3.1 10.3 1.0
CAP A:ROD401 3.1 9.5 1.0
N A:LEU71 3.2 9.7 1.0
CAM A:ROD401 3.3 9.8 1.0
OAA A:ROD401 3.3 9.6 1.0
CA A:GLY70 3.4 9.3 1.0
CAK A:ROD401 3.4 12.6 1.0
C A:GLY70 3.5 9.7 1.0
O A:HOH675 3.5 33.0 1.0
N A:GLY70 3.7 9.5 1.0
CAS A:ROD401 3.9 8.8 1.0
CAT A:ROD401 3.9 8.9 1.0
CB A:LEU71 4.0 10.7 1.0
CA A:LEU71 4.1 10.0 1.0
CAJ A:ROD401 4.3 13.3 1.0
O A:HOH693 4.3 14.8 1.0
O A:GLY70 4.4 10.2 1.0
CAI A:ROD401 4.6 12.8 1.0
O A:HOH694 4.7 27.1 1.0
C A:MET69 4.9 9.9 1.0
CAH A:ROD401 5.0 12.9 1.0

Fluorine binding site 2 out of 6 in 3w2n

Go back to Fluorine Binding Sites List in 3w2n
Fluorine binding site 2 out of 6 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:14.2
occ:1.00
 FAG A:ROD401 0.0 14.2 1.0
CAW A:ROD401 1.4 13.7 1.0
FAF A:ROD401 2.2 12.4 1.0
FAE A:ROD401 2.2 14.0 1.0
CAR A:ROD401 2.4 12.1 1.0
CAK A:ROD401 2.7 12.6 1.0
CA A:GLY70 3.6 9.3 1.0
O A:HOH693 3.6 14.8 1.0
C A:GLY70 3.7 9.7 1.0
CAQ A:ROD401 3.7 11.6 1.0
NH2 A:ARG50 4.0 15.4 1.0
O A:GLY70 4.0 10.2 1.0
CAI A:ROD401 4.0 12.8 1.0
N A:LEU71 4.1 9.7 1.0
CB A:LEU71 4.5 10.7 1.0
CAL A:ROD401 4.5 10.3 1.0
N A:GLY70 4.5 9.5 1.0
CG A:PRO131 4.6 23.1 1.0
CAJ A:ROD401 4.8 13.3 1.0
CZ A:ARG50 4.8 16.1 1.0
O A:HOH700 4.8 31.5 1.0
CAH A:ROD401 4.9 12.9 1.0
CD A:PRO131 4.9 23.1 1.0
OAD A:ROD401 5.0 9.0 1.0
CA A:LEU71 5.0 10.0 1.0

Fluorine binding site 3 out of 6 in 3w2n

Go back to Fluorine Binding Sites List in 3w2n
Fluorine binding site 3 out of 6 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:14.0
occ:1.00
 FAE A:ROD401 0.0 14.0 1.0
CAW A:ROD401 1.4 13.7 1.0
FAF A:ROD401 2.2 12.4 1.0
FAG A:ROD401 2.2 14.2 1.0
CAR A:ROD401 2.4 12.1 1.0
CAQ A:ROD401 3.1 11.6 1.0
O A:HOH694 3.1 27.1 1.0
CAL A:ROD401 3.3 10.3 1.0
CAK A:ROD401 3.4 12.6 1.0
O A:HOH675 3.6 33.0 1.0
O A:HOH696 3.6 33.2 1.0
O A:HOH693 3.8 14.8 1.0
CG A:PRO131 4.3 23.1 1.0
CAM A:ROD401 4.3 9.8 1.0
CAJ A:ROD401 4.4 13.3 1.0
OAD A:ROD401 4.4 9.0 1.0
O1 A:GOL405 4.5 23.4 1.0
CD A:PRO131 4.6 23.1 1.0
CAI A:ROD401 4.7 12.8 1.0
CAP A:ROD401 4.8 9.5 1.0
CA A:GLY70 4.9 9.3 1.0
CAT A:ROD401 4.9 8.9 1.0

Fluorine binding site 4 out of 6 in 3w2n

Go back to Fluorine Binding Sites List in 3w2n
Fluorine binding site 4 out of 6 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:16.0
occ:1.00
 FAF B:ROD401 0.0 16.0 1.0
CAW B:ROD401 1.3 14.8 1.0
FAE B:ROD401 2.1 15.7 1.0
FAG B:ROD401 2.1 13.4 1.0
CAR B:ROD401 2.3 13.0 1.0
CAQ B:ROD401 3.1 12.4 1.0
CAK B:ROD401 3.3 11.7 1.0
CAL B:ROD401 3.3 10.5 1.0
O B:HOH692 3.4 35.0 1.0
O B:HOH687 3.7 32.0 1.0
O B:HOH693 3.9 30.6 1.0
O B:HOH694 4.0 35.6 1.0
O B:HOH689 4.0 19.6 1.0
CAM B:ROD401 4.3 9.7 1.0
CAJ B:ROD401 4.3 11.9 1.0
CAI B:ROD401 4.5 12.4 1.0
O3 B:GOL402 4.5 24.9 1.0
OAA B:ROD401 4.5 10.6 1.0
CAP B:ROD401 4.8 11.2 1.0
CA B:GLY70 4.8 11.4 1.0
CAT B:ROD401 4.9 9.1 1.0
CAH B:ROD401 4.9 12.6 1.0

Fluorine binding site 5 out of 6 in 3w2n

Go back to Fluorine Binding Sites List in 3w2n
Fluorine binding site 5 out of 6 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:13.4
occ:1.00
 FAG B:ROD401 0.0 13.4 1.0
CAW B:ROD401 1.3 14.8 1.0
FAF B:ROD401 2.1 16.0 1.0
FAE B:ROD401 2.2 15.7 1.0
CAR B:ROD401 2.3 13.0 1.0
CAQ B:ROD401 3.0 12.4 1.0
CAL B:ROD401 3.0 10.5 1.0
OAA B:ROD401 3.2 10.6 1.0
CAP B:ROD401 3.2 11.2 1.0
N B:LEU71 3.2 11.0 1.0
CAM B:ROD401 3.2 9.7 1.0
OAD B:ROD401 3.3 12.3 1.0
CA B:GLY70 3.4 11.4 1.0
CAK B:ROD401 3.4 11.7 1.0
C B:GLY70 3.4 11.2 1.0
N B:GLY70 3.7 10.5 1.0
CB B:LEU71 3.7 12.3 1.0
O B:HOH693 3.8 30.6 1.0
O B:HOH687 3.8 32.0 1.0
CAS B:ROD401 3.9 9.4 1.0
CAT B:ROD401 3.9 9.1 1.0
CA B:LEU71 4.0 11.4 1.0
CAJ B:ROD401 4.3 11.9 1.0
O B:GLY70 4.3 13.7 1.0
O B:HOH689 4.6 19.6 1.0
CAI B:ROD401 4.6 12.4 1.0
CD1 B:LEU71 4.8 13.9 1.0
CG B:LEU71 4.9 13.3 1.0
C B:MET69 4.9 10.1 1.0
CAH B:ROD401 5.0 12.6 1.0

Fluorine binding site 6 out of 6 in 3w2n

Go back to Fluorine Binding Sites List in 3w2n
Fluorine binding site 6 out of 6 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:15.7
occ:1.00
 FAE B:ROD401 0.0 15.7 1.0
CAW B:ROD401 1.3 14.8 1.0
FAF B:ROD401 2.1 16.0 1.0
FAG B:ROD401 2.2 13.4 1.0
CAR B:ROD401 2.3 13.0 1.0
CAK B:ROD401 2.6 11.7 1.0
CA B:GLY70 3.6 11.4 1.0
C B:GLY70 3.7 11.2 1.0
O B:HOH689 3.7 19.6 1.0
CAQ B:ROD401 3.7 12.4 1.0
CAI B:ROD401 4.0 12.4 1.0
O B:GLY70 4.0 13.7 1.0
NH2 B:ARG50 4.1 16.1 1.0
N B:LEU71 4.1 11.0 1.0
O B:HOH693 4.3 30.6 1.0
CB B:LEU71 4.3 12.3 1.0
CAL B:ROD401 4.4 10.5 1.0
N B:GLY70 4.5 10.5 1.0
CAJ B:ROD401 4.8 11.9 1.0
CA B:LEU71 4.9 11.4 1.0
CAH B:ROD401 4.9 12.6 1.0
CZ B:ARG50 5.0 18.1 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-3-185 To Be Published.
Page generated: Wed Jul 31 23:27:32 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy