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Fluorine in PDB 3zs9: S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment

Enzymatic activity of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment

All present enzymatic activity of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment:
3.6.3.16;

Protein crystallography data

The structure of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment, PDB code: 3zs9 was solved by M.Mariappan, A.Mateja, M.Dobosz, E.Bove, R.S.Hegde, R.J.Keenan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.537 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.558, 77.317, 165.831, 90.00, 90.00, 90.00
R / Rfree (%) 18.22 / 23.8

Other elements in 3zs9:

The structure of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Aluminium (Al) 2 atoms
Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment (pdb code 3zs9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment, PDB code: 3zs9:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 3zs9

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Fluorine binding site 1 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:30.3
occ:1.00
 F1 A:ALF402 0.0 30.3 1.0
AL A:ALF402 1.8 19.7 1.0
F3 A:ALF402 2.5 20.1 1.0
F4 A:ALF402 2.5 42.0 1.0
O2B A:ADP401 2.6 12.5 1.0
O A:HOH2035 2.7 10.7 1.0
N B:GLY27 2.8 17.8 1.0
CA B:GLY27 3.0 11.8 1.0
NZ B:LYS26 3.0 12.3 1.0
CG B:LYS26 3.1 12.4 1.0
O B:GLY27 3.5 16.7 1.0
F2 A:ALF402 3.5 32.8 1.0
O B:HOH2016 3.5 19.4 1.0
C B:GLY27 3.7 14.4 1.0
N A:GLY28 3.7 14.6 1.0
CE B:LYS26 3.7 12.1 1.0
C B:LYS26 3.9 17.5 1.0
CD B:LYS26 4.0 13.3 1.0
O A:HOH2036 4.1 19.6 1.0
CA A:GLY28 4.2 13.4 1.0
PB A:ADP401 4.2 14.4 1.0
CB B:LYS26 4.3 15.0 1.0
CA B:LYS26 4.4 16.4 1.0
O B:HOH2014 4.5 19.1 1.0
C A:GLY27 4.6 16.9 1.0
CA A:GLY27 4.6 15.6 1.0
O A:HOH1403 4.7 12.5 1.0
O B:LYS26 4.8 16.6 1.0
O3B A:ADP401 4.9 16.1 1.0
O3A A:ADP401 4.9 17.1 1.0
OD2 A:ASP57 4.9 16.6 1.0
MG A:MG403 4.9 18.1 1.0
N B:GLY28 4.9 19.3 1.0
CG A:PRO169 4.9 14.7 1.0
O1B A:ADP401 5.0 22.2 1.0

Fluorine binding site 2 out of 8 in 3zs9

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Fluorine binding site 2 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:32.8
occ:1.00
 F2 A:ALF402 0.0 32.8 1.0
AL A:ALF402 1.8 19.7 1.0
MG A:MG403 2.0 18.1 1.0
F4 A:ALF402 2.5 42.0 1.0
O2B A:ADP401 2.5 12.5 1.0
O A:HOH1401 2.6 10.1 1.0
F3 A:ALF402 2.6 20.1 1.0
O3B A:ADP401 2.7 16.1 1.0
O A:HOH2035 2.9 10.7 1.0
O A:HOH1402 2.9 24.1 1.0
PB A:ADP401 3.1 14.4 1.0
OD2 A:ASP57 3.2 16.6 1.0
O A:HOH1403 3.4 12.5 1.0
F1 A:ALF402 3.5 30.3 1.0
CE A:LYS31 3.6 18.9 1.0
O1B A:ADP401 3.7 22.2 1.0
NZ A:LYS31 3.8 17.1 1.0
OG1 A:THR32 4.0 16.1 1.0
O A:HOH2036 4.1 19.6 1.0
O A:THR167 4.3 14.6 1.0
CG A:ASP57 4.3 16.8 1.0
O3A A:ADP401 4.4 17.1 1.0
CB A:LYS31 4.6 13.5 1.0
CD A:PRO169 4.6 16.2 1.0
CB A:ASP57 4.8 7.0 1.0
NZ B:LYS26 4.8 12.3 1.0
OD1 A:ASN61 4.8 25.6 1.0
CG A:PRO169 4.9 14.7 1.0
CD A:LYS31 4.9 19.0 1.0
N A:THR32 5.0 16.5 1.0

Fluorine binding site 3 out of 8 in 3zs9

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Fluorine binding site 3 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:20.1
occ:1.00
 F3 A:ALF402 0.0 20.1 1.0
AL A:ALF402 1.8 19.7 1.0
O2B A:ADP401 2.4 12.5 1.0
F1 A:ALF402 2.5 30.3 1.0
F2 A:ALF402 2.6 32.8 1.0
O A:HOH2035 2.7 10.7 1.0
NZ A:LYS31 2.9 17.1 1.0
N A:GLY28 3.0 14.6 1.0
CA A:GLY27 3.2 15.6 1.0
CG A:PRO169 3.4 14.7 1.0
PB A:ADP401 3.4 14.4 1.0
O1B A:ADP401 3.5 22.2 1.0
F4 A:ALF402 3.5 42.0 1.0
CE A:LYS31 3.6 18.9 1.0
C A:GLY27 3.6 16.9 1.0
CD A:PRO169 4.0 16.2 1.0
CA B:GLY27 4.0 11.8 1.0
CA A:GLY28 4.1 13.4 1.0
O3B A:ADP401 4.1 16.1 1.0
N A:GLY27 4.3 15.9 1.0
O A:LYS26 4.4 18.2 1.0
CB A:PRO169 4.4 18.5 1.0
MG A:MG403 4.4 18.1 1.0
N B:GLY27 4.5 17.8 1.0
N A:PRO169 4.6 17.4 1.0
C B:GLY27 4.6 14.4 1.0
OD2 A:ASP57 4.6 16.6 1.0
O3A A:ADP401 4.7 17.1 1.0
C A:LYS26 4.8 10.7 1.0
CA A:PRO169 4.8 17.6 1.0
NZ B:LYS26 4.8 12.3 1.0
O B:HOH2016 4.8 19.4 1.0
O B:GLY27 4.8 16.7 1.0
O A:HOH1401 4.8 10.1 1.0
O A:GLY27 4.9 17.1 1.0

Fluorine binding site 4 out of 8 in 3zs9

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Fluorine binding site 4 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:42.0
occ:1.00
 F4 A:ALF402 0.0 42.0 1.0
AL A:ALF402 1.8 19.7 1.0
F2 A:ALF402 2.5 32.8 1.0
F1 A:ALF402 2.5 30.3 1.0
O A:HOH1403 2.5 12.5 1.0
O A:HOH2036 2.5 19.6 1.0
O2B A:ADP401 2.7 12.5 1.0
MG A:MG403 2.9 18.1 1.0
OD1 A:ASN61 2.9 25.6 1.0
O A:HOH2035 3.0 10.7 1.0
NZ B:LYS26 3.0 12.3 1.0
O A:HOH1402 3.1 24.1 1.0
CE B:LYS26 3.3 12.1 1.0
F3 A:ALF402 3.5 20.1 1.0
OD2 A:ASP57 3.6 16.6 1.0
O3B A:ADP401 3.6 16.1 1.0
PB A:ADP401 3.9 14.4 1.0
CG B:LYS26 4.0 12.4 1.0
O2A A:ADP401 4.0 16.9 1.0
CG A:ASN61 4.1 20.9 1.0
O B:HOH2016 4.1 19.4 1.0
CD B:LYS26 4.3 13.3 1.0
O3A A:ADP401 4.4 17.1 1.0
OE1 B:GLU251 4.6 23.5 1.0
O A:HOH1401 4.6 10.1 1.0
OG1 A:THR32 4.7 16.1 1.0
CB A:ASN61 4.7 12.6 1.0
O A:ALA59 4.8 19.0 1.0
CG A:ASP57 4.9 16.8 1.0
N B:GLY27 5.0 17.8 1.0

Fluorine binding site 5 out of 8 in 3zs9

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Fluorine binding site 5 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:28.3
occ:1.00
 F1 B:ALF402 0.0 28.3 1.0
AL B:ALF402 1.8 24.7 1.0
F4 B:ALF402 2.5 31.7 1.0
F3 B:ALF402 2.5 27.2 1.0
O2B B:ADP401 2.6 13.4 1.0
NZ A:LYS26 2.8 16.0 1.0
O B:HOH2029 2.8 18.6 1.0
N A:GLY27 2.8 15.9 1.0
CG A:LYS26 3.0 11.4 1.0
CA A:GLY27 3.2 15.6 1.0
F2 B:ALF402 3.5 26.2 1.0
CE A:LYS26 3.6 16.9 1.0
O A:GLY27 3.6 17.1 1.0
O A:HOH2017 3.6 15.0 1.0
N B:GLY28 3.7 19.3 1.0
C A:GLY27 3.8 16.9 1.0
CD A:LYS26 3.9 13.3 1.0
C A:LYS26 4.0 10.7 1.0
O A:HOH2085 4.1 23.0 1.0
CA B:GLY28 4.1 12.0 1.0
PB B:ADP401 4.2 14.8 1.0
CB A:LYS26 4.2 10.9 1.0
O A:HOH2016 4.4 29.5 1.0
CA A:LYS26 4.4 15.2 1.0
C B:GLY27 4.6 14.4 1.0
O B:HOH1403 4.7 13.6 1.0
CA B:GLY27 4.7 11.8 1.0
O3B B:ADP401 4.8 12.7 1.0
O3A B:ADP401 4.8 18.1 1.0
MG B:MG403 4.9 17.8 1.0
O A:LYS26 5.0 18.2 1.0
O1B B:ADP401 5.0 15.8 1.0

Fluorine binding site 6 out of 8 in 3zs9

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Fluorine binding site 6 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:26.2
occ:1.00
 F2 B:ALF402 0.0 26.2 1.0
AL B:ALF402 1.8 24.7 1.0
MG B:MG403 2.0 17.8 1.0
F4 B:ALF402 2.4 31.7 1.0
O B:HOH1401 2.5 18.1 1.0
F3 B:ALF402 2.6 27.2 1.0
O2B B:ADP401 2.6 13.4 1.0
O3B B:ADP401 2.7 12.7 1.0
O B:HOH2029 2.8 18.6 1.0
O B:HOH1402 3.0 20.4 1.0
PB B:ADP401 3.1 14.8 1.0
OD2 B:ASP57 3.3 19.1 1.0
O B:HOH1403 3.4 13.6 1.0
F1 B:ALF402 3.5 28.3 1.0
NZ B:LYS31 3.7 16.8 1.0
O1B B:ADP401 3.7 15.8 1.0
CE B:LYS31 3.7 18.9 1.0
OG1 B:THR32 4.0 13.3 1.0
O A:HOH2085 4.1 23.0 1.0
O3A B:ADP401 4.4 18.1 1.0
CG B:ASP57 4.4 20.7 1.0
O B:THR167 4.6 22.9 1.0
CD B:PRO169 4.6 17.4 1.0
CG B:PRO169 4.7 19.1 1.0
CB B:LYS31 4.7 16.6 1.0
NZ A:LYS26 4.8 16.0 1.0
CB B:ASP57 4.9 16.2 1.0
O2A B:ADP401 5.0 19.7 1.0

Fluorine binding site 7 out of 8 in 3zs9

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Fluorine binding site 7 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:27.2
occ:1.00
 F3 B:ALF402 0.0 27.2 1.0
AL B:ALF402 1.8 24.7 1.0
F1 B:ALF402 2.5 28.3 1.0
O2B B:ADP401 2.5 13.4 1.0
F2 B:ALF402 2.6 26.2 1.0
O B:HOH2029 2.7 18.6 1.0
NZ B:LYS31 2.8 16.8 1.0
N B:GLY28 3.1 19.3 1.0
CG B:PRO169 3.3 19.1 1.0
CA B:GLY27 3.3 11.8 1.0
PB B:ADP401 3.5 14.8 1.0
F4 B:ALF402 3.5 31.7 1.0
O1B B:ADP401 3.6 15.8 1.0
CE B:LYS31 3.6 18.9 1.0
C B:GLY27 3.7 14.4 1.0
CD B:PRO169 4.0 17.4 1.0
CA A:GLY27 4.1 15.6 1.0
CA B:GLY28 4.1 12.0 1.0
O3B B:ADP401 4.2 12.7 1.0
CB B:PRO169 4.3 15.6 1.0
N B:GLY27 4.4 17.8 1.0
MG B:MG403 4.4 17.8 1.0
N A:GLY27 4.5 15.9 1.0
O B:LYS26 4.5 16.6 1.0
OD2 B:ASP57 4.7 19.1 1.0
NZ A:LYS26 4.7 16.0 1.0
N B:PRO169 4.7 16.1 1.0
O B:HOH1401 4.7 18.1 1.0
O3A B:ADP401 4.8 18.1 1.0
C A:GLY27 4.8 16.9 1.0
CA B:PRO169 4.8 15.5 1.0
O A:HOH2017 4.8 15.0 1.0
C B:LYS26 4.9 17.5 1.0
O B:GLY27 4.9 16.7 1.0

Fluorine binding site 8 out of 8 in 3zs9

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Fluorine binding site 8 out of 8 in the S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of S. Cerevisiae GET3-Adp-ALF4- Complex with A Cytosolic GET2 Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:31.7
occ:1.00
 F4 B:ALF402 0.0 31.7 1.0
AL B:ALF402 1.8 24.7 1.0
F2 B:ALF402 2.4 26.2 1.0
F1 B:ALF402 2.5 28.3 1.0
O B:HOH1403 2.5 13.6 1.0
O A:HOH2085 2.6 23.0 1.0
O2B B:ADP401 2.7 13.4 1.0
NZ A:LYS26 2.9 16.0 1.0
MG B:MG403 2.9 17.8 1.0
O B:HOH2029 2.9 18.6 1.0
ND2 B:ASN61 3.1 24.9 1.0
CE A:LYS26 3.2 16.9 1.0
O B:HOH1402 3.3 20.4 1.0
F3 B:ALF402 3.5 27.2 1.0
O3B B:ADP401 3.6 12.7 1.0
PB B:ADP401 3.8 14.8 1.0
OD2 B:ASP57 3.9 19.1 1.0
O2A B:ADP401 3.9 19.7 1.0
CG A:LYS26 3.9 11.4 1.0
CD A:LYS26 4.1 13.3 1.0
O A:HOH2017 4.2 15.0 1.0
CG B:ASN61 4.3 26.8 1.0
O3A B:ADP401 4.4 18.1 1.0
OE1 A:GLU251 4.5 25.9 1.0
O B:HOH1401 4.5 18.1 1.0
OG1 B:THR32 4.7 13.3 1.0
CB B:ASN61 4.9 16.2 1.0
PA B:ADP401 5.0 15.0 1.0

Reference:

M.Mariappan, A.Mateja, M.Dobosz, E.Bove, R.S.Hegde, R.J.Keenan. The Mechanism of Membrane-Associated Steps in Tail-Anchored Protein Insertion. Nature V. 477 61 2011.
ISSN: ISSN 0028-0836
PubMed: 21866104
DOI: 10.1038/NATURE10362
Page generated: Wed Jul 31 23:49:54 2024

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