Fluorine in PDB 4bb0: Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
Protein crystallography data
The structure of Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa., PDB code: 4bb0
was solved by
J.W.Schmidberger,
R.Schnell,
G.Schneider,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.16 /
1.77
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.242,
83.242,
140.541,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.092 /
21.522
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
(pdb code 4bb0). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the
Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa., PDB code: 4bb0:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
Fluorine binding site 1 out
of 5 in 4bb0
Go back to
Fluorine Binding Sites List in 4bb0
Fluorine binding site 1 out
of 5 in the Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1311
b:42.2
occ:1.00
|
F
|
A:FAH1311
|
0.0
|
42.2
|
1.0
|
CH3
|
A:FAH1311
|
1.4
|
31.8
|
1.0
|
C
|
A:FAH1311
|
2.5
|
30.4
|
1.0
|
OXT
|
A:FAH1311
|
2.8
|
20.5
|
1.0
|
C
|
A:THR131
|
3.0
|
23.5
|
1.0
|
CA
|
A:THR131
|
3.0
|
20.8
|
1.0
|
CB
|
A:TRP243
|
3.0
|
18.0
|
1.0
|
O
|
A:THR131
|
3.3
|
24.7
|
1.0
|
N
|
A:VAL132
|
3.4
|
17.3
|
1.0
|
O
|
A:FAH1311
|
3.6
|
39.4
|
1.0
|
CA
|
A:TRP243
|
3.6
|
18.2
|
1.0
|
N
|
A:THR131
|
3.7
|
19.2
|
1.0
|
CG
|
A:PRO254
|
3.8
|
23.3
|
1.0
|
O
|
A:LEU242
|
3.9
|
18.7
|
1.0
|
CB
|
A:PRO254
|
4.0
|
18.4
|
1.0
|
CG2
|
A:VAL241
|
4.1
|
17.8
|
1.0
|
CB
|
A:THR131
|
4.3
|
20.9
|
1.0
|
CA
|
A:VAL132
|
4.3
|
15.3
|
1.0
|
N
|
A:TRP243
|
4.4
|
16.1
|
1.0
|
CG
|
A:TRP243
|
4.4
|
17.6
|
1.0
|
C
|
A:LEU242
|
4.4
|
14.8
|
1.0
|
C
|
A:VAL132
|
4.5
|
16.5
|
1.0
|
O
|
A:VAL132
|
4.5
|
21.6
|
1.0
|
OH
|
A:TYR248
|
4.5
|
21.3
|
1.0
|
O
|
A:HOH2248
|
4.6
|
33.1
|
1.0
|
N
|
A:GLU244
|
4.7
|
19.6
|
1.0
|
C
|
A:TRP243
|
4.7
|
17.2
|
1.0
|
C
|
A:LEU130
|
4.9
|
17.9
|
1.0
|
CG2
|
A:THR131
|
4.9
|
25.5
|
1.0
|
|
Fluorine binding site 2 out
of 5 in 4bb0
Go back to
Fluorine Binding Sites List in 4bb0
Fluorine binding site 2 out
of 5 in the Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1312
b:46.2
occ:0.90
|
F
|
A:FAH1312
|
0.0
|
46.2
|
0.9
|
CH3
|
A:FAH1312
|
1.4
|
40.5
|
0.9
|
C
|
A:FAH1312
|
2.4
|
46.8
|
0.9
|
OXT
|
A:FAH1312
|
2.6
|
48.3
|
0.9
|
CD
|
A:ARG165
|
3.3
|
37.8
|
1.0
|
O
|
A:FAH1312
|
3.5
|
48.9
|
0.9
|
NE
|
A:ARG165
|
3.7
|
37.0
|
1.0
|
OD1
|
A:ASP161
|
3.7
|
28.5
|
1.0
|
CA
|
A:LEU162
|
3.8
|
20.6
|
1.0
|
N
|
A:LEU162
|
4.0
|
19.8
|
1.0
|
CD2
|
A:LEU162
|
4.1
|
23.0
|
1.0
|
CB
|
A:LEU162
|
4.1
|
21.4
|
1.0
|
C
|
A:ASP161
|
4.4
|
20.4
|
1.0
|
O
|
A:ASP161
|
4.5
|
20.0
|
1.0
|
CZ
|
A:ARG165
|
4.6
|
36.5
|
1.0
|
CG
|
A:ARG165
|
4.7
|
26.8
|
1.0
|
CG
|
A:ASP161
|
4.7
|
29.6
|
1.0
|
CG
|
A:LEU162
|
4.7
|
21.1
|
1.0
|
C
|
A:LEU162
|
5.0
|
19.3
|
1.0
|
O
|
A:HOH2144
|
5.0
|
40.4
|
1.0
|
CB
|
A:ARG165
|
5.0
|
25.5
|
1.0
|
|
Fluorine binding site 3 out
of 5 in 4bb0
Go back to
Fluorine Binding Sites List in 4bb0
Fluorine binding site 3 out
of 5 in the Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1313
b:40.0
occ:1.00
|
F
|
A:FAH1313
|
0.0
|
40.0
|
1.0
|
CH3
|
A:FAH1313
|
1.4
|
28.0
|
1.0
|
C
|
A:FAH1313
|
2.4
|
34.6
|
1.0
|
OXT
|
A:FAH1313
|
2.5
|
25.6
|
1.0
|
O
|
A:HOH2249
|
3.3
|
28.5
|
1.0
|
CD2
|
A:TYR189
|
3.3
|
13.8
|
1.0
|
O
|
A:FAH1313
|
3.5
|
40.0
|
1.0
|
O
|
A:HOH2250
|
3.9
|
46.9
|
1.0
|
CD1
|
A:LEU194
|
3.9
|
17.9
|
1.0
|
CE2
|
A:TYR189
|
3.9
|
15.1
|
1.0
|
CD2
|
A:LEU194
|
4.0
|
22.8
|
1.0
|
CB
|
A:LEU179
|
4.0
|
17.1
|
1.0
|
CG
|
A:TYR189
|
4.1
|
13.0
|
1.0
|
CB
|
A:TYR189
|
4.3
|
15.9
|
1.0
|
CD1
|
A:LEU179
|
4.4
|
23.5
|
1.0
|
CG
|
A:ARG180
|
4.4
|
22.8
|
1.0
|
O
|
A:HOH2169
|
4.4
|
29.3
|
1.0
|
O
|
A:ASP176
|
4.6
|
17.8
|
1.0
|
CG
|
A:LEU194
|
4.6
|
17.5
|
1.0
|
N
|
A:ARG180
|
4.7
|
16.5
|
1.0
|
O
|
A:HOH2167
|
4.8
|
28.2
|
1.0
|
CG
|
A:LEU179
|
4.9
|
21.1
|
1.0
|
CA
|
A:ASP176
|
5.0
|
20.9
|
1.0
|
C
|
A:LEU179
|
5.0
|
16.8
|
1.0
|
|
Fluorine binding site 4 out
of 5 in 4bb0
Go back to
Fluorine Binding Sites List in 4bb0
Fluorine binding site 4 out
of 5 in the Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1314
b:49.5
occ:0.70
|
F
|
A:FAH1314
|
0.0
|
49.5
|
0.7
|
CH3
|
A:FAH1314
|
1.4
|
39.4
|
0.7
|
C
|
A:FAH1314
|
2.5
|
36.1
|
0.7
|
O
|
A:FAH1314
|
2.6
|
57.9
|
0.7
|
NE
|
A:ARG180
|
3.5
|
35.0
|
1.0
|
OXT
|
A:FAH1314
|
3.7
|
35.3
|
0.7
|
CD
|
A:ARG180
|
3.9
|
29.5
|
1.0
|
CZ
|
A:ARG180
|
4.4
|
31.6
|
1.0
|
O
|
A:HOH2160
|
4.6
|
49.2
|
1.0
|
NH2
|
A:ARG180
|
4.7
|
32.1
|
1.0
|
O
|
A:HOH2165
|
4.7
|
36.6
|
1.0
|
|
Fluorine binding site 5 out
of 5 in 4bb0
Go back to
Fluorine Binding Sites List in 4bb0
Fluorine binding site 5 out
of 5 in the Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of A Putative Epoxide Hydrolase Q244E Mutant From Pseudomonas Aeruginosa, with Bound Mfa. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1315
b:57.5
occ:0.90
|
F
|
A:FAH1315
|
0.0
|
57.5
|
0.9
|
CH3
|
A:FAH1315
|
1.5
|
25.5
|
0.9
|
C
|
A:FAH1315
|
2.5
|
32.0
|
0.9
|
O
|
A:FAH1315
|
2.7
|
44.9
|
0.9
|
OXT
|
A:FAH1315
|
3.6
|
34.0
|
0.9
|
CE
|
A:MET182
|
4.0
|
36.1
|
1.0
|
CG
|
A:MET182
|
4.1
|
19.5
|
1.0
|
O
|
A:HOH2139
|
4.1
|
39.0
|
1.0
|
CD2
|
A:HIS274
|
4.2
|
28.2
|
1.0
|
CG
|
A:HIS274
|
4.3
|
24.0
|
1.0
|
NE2
|
A:HIS274
|
4.4
|
24.4
|
1.0
|
CE1
|
A:HIS152
|
4.5
|
19.5
|
1.0
|
ND1
|
A:HIS274
|
4.6
|
26.1
|
1.0
|
CE1
|
A:HIS274
|
4.6
|
27.3
|
1.0
|
SD
|
A:MET182
|
4.7
|
27.2
|
1.0
|
CB
|
A:HIS274
|
4.7
|
18.7
|
1.0
|
O
|
A:HOH2215
|
4.8
|
41.2
|
1.0
|
O
|
A:HOH2133
|
4.9
|
40.3
|
1.0
|
NE2
|
A:HIS152
|
4.9
|
18.7
|
1.0
|
|
Reference:
J.W.Schmidberger,
R.Schnell,
G.Schneider.
Structure of A Putative Epoxide Hydrolase Mutant To Be Published.
Page generated: Thu Aug 1 00:10:15 2024
|