Fluorine in PDB 4c7o: The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna

The structure of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna, PDB code: 4c7o was solved by F.Voigts-Hoffmann, N.Schmitz, K.Shen, S.O.Shan, S.F.Ataide, N.Ban, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.222 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.720, 166.330, 154.590, 90.00, 90.00, 90.00
R / Rfree (%)	16.32 / 22.55

The structure of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Aluminium	(Al)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Fluorine atom in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna (pdb code 4c7o). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna, PDB code: 4c7o:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:75.7 occ:1.00 F1 A:ALF1001 0.0 75.7 1.0 AL A:ALF1001 1.8 50.2 1.0 O A:HOH1006 2.4 54.7 1.0 F3 A:ALF1001 2.5 63.1 1.0 F4 A:ALF1001 2.5 45.8 1.0 O A:HOH1004 2.6 64.7 1.0 O2B A:GDP1003 2.7 48.9 1.0 NZ A:LYS113 2.8 46.5 1.0 MG A:MG1002 2.9 50.4 1.0 N A:GLY193 3.0 49.4 1.0 PB A:GDP1003 3.1 41.0 1.0 O3B A:GDP1003 3.1 40.4 1.0 CE A:LYS113 3.1 48.9 1.0 O1B A:GDP1003 3.2 42.9 1.0 O A:THR191 3.4 40.6 1.0 F2 A:ALF1001 3.5 53.4 1.0 CA A:GLY193 3.6 42.8 1.0 C A:ALA192 3.7 53.3 1.0 OD2 A:ASP138 4.0 55.7 1.0 CA A:ALA192 4.0 49.4 1.0 O A:HOH1007 4.1 54.0 1.0 C A:THR191 4.5 50.0 1.0 O A:HOH1005 4.5 46.0 1.0 CD A:LYS113 4.5 45.5 1.0 CB A:LYS113 4.5 36.7 1.0 N A:GLY110 4.6 41.8 1.0 O A:ALA192 4.7 52.5 1.0 O3A A:GDP1003 4.7 36.6 1.0 N A:ALA192 4.7 50.3 1.0 OG1 A:THR114 4.8 42.7 1.0 CG A:LYS113 4.8 39.3 1.0 O B:HOH2073 4.9 69.0 1.0 O A:LEU108 4.9 56.2 1.0

Fluorine binding site 2 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:53.4 occ:1.00 F2 A:ALF1001 0.0 53.4 1.0 AL A:ALF1001 1.8 50.2 1.0 F3 A:ALF1001 2.5 63.1 1.0 O3' B:GDP1003 2.5 48.9 1.0 F4 A:ALF1001 2.5 45.8 1.0 O A:HOH1004 2.6 64.7 1.0 O2B A:GDP1003 2.6 48.9 1.0 NH1 A:ARG141 2.7 58.0 1.0 CD A:ARG141 3.0 55.2 1.0 C3' B:GDP1003 3.4 49.1 1.0 C4' B:GDP1003 3.5 49.3 1.0 F1 A:ALF1001 3.5 75.7 1.0 CZ A:ARG141 3.7 57.6 1.0 N A:GLY110 3.7 41.8 1.0 O B:HOH2073 3.7 69.0 1.0 NE A:ARG141 3.8 52.2 1.0 CG A:ARG141 4.0 52.0 1.0 PB A:GDP1003 4.1 41.0 1.0 C5' B:GDP1003 4.1 39.6 1.0 CB A:ARG141 4.2 50.0 1.0 CA A:GLY110 4.3 45.6 1.0 O A:HOH1005 4.3 46.0 1.0 MG A:MG1002 4.5 50.4 1.0 C A:GLN109 4.6 43.3 1.0 OD2 A:ASP138 4.6 55.7 1.0 O1B A:GDP1003 4.7 42.9 1.0 CA A:GLN109 4.7 43.4 1.0 O4' B:GDP1003 4.7 52.9 1.0 C2' B:GDP1003 4.8 53.5 1.0 CB A:GLN109 4.8 50.0 1.0 O3B A:GDP1003 4.9 40.4 1.0 O3A A:GDP1003 4.9 36.6 1.0 N A:GLY193 4.9 49.4 1.0 NH2 A:ARG141 4.9 60.9 1.0

Fluorine binding site 3 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:63.1 occ:1.00 F3 A:ALF1001 0.0 63.1 1.0 AL A:ALF1001 1.8 50.2 1.0 MG A:MG1002 2.2 50.4 1.0 O A:HOH1004 2.5 64.7 1.0 F2 A:ALF1001 2.5 53.4 1.0 F1 A:ALF1001 2.5 75.7 1.0 O A:HOH1005 2.6 46.0 1.0 O2B A:GDP1003 2.7 48.9 1.0 O A:HOH1007 3.0 54.0 1.0 OD2 A:ASP138 3.1 55.7 1.0 CD A:ARG141 3.2 55.2 1.0 O1B A:GDP1003 3.3 42.9 1.0 NH1 A:ARG141 3.4 58.0 1.0 O A:HOH1006 3.4 54.7 1.0 F4 A:ALF1001 3.5 45.8 1.0 PB A:GDP1003 3.6 41.0 1.0 NE A:ARG141 4.0 52.2 1.0 CZ A:ARG141 4.0 57.6 1.0 CB A:ARG141 4.3 50.0 1.0 OG1 A:THR114 4.3 42.7 1.0 CG A:ASP138 4.3 57.4 1.0 CG A:ARG141 4.4 52.0 1.0 O2A A:GDP1003 4.4 43.5 1.0 O3B A:GDP1003 4.5 40.4 1.0 CB A:ALA144 4.5 47.9 1.0 O3' B:GDP1003 4.7 48.9 1.0 N A:GLY193 4.7 49.4 1.0 O3A A:GDP1003 4.7 36.6 1.0 O B:HOH2073 4.8 69.0 1.0

Fluorine binding site 4 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:45.8 occ:1.00 F4 A:ALF1001 0.0 45.8 1.0 AL A:ALF1001 1.8 50.2 1.0 F2 A:ALF1001 2.5 53.4 1.0 F1 A:ALF1001 2.5 75.7 1.0 O2B A:GDP1003 2.6 48.9 1.0 N A:GLY110 2.6 41.8 1.0 O A:HOH1004 2.6 64.7 1.0 CA A:GLN109 2.9 43.4 1.0 CA A:GLY193 3.1 42.8 1.0 C A:GLN109 3.2 43.3 1.0 N A:GLY193 3.3 49.4 1.0 NZ A:LYS113 3.3 46.5 1.0 F3 A:ALF1001 3.5 63.1 1.0 CB A:GLN109 3.6 50.0 1.0 O3B A:GDP1003 3.7 40.4 1.0 PB A:GDP1003 3.7 41.0 1.0 O A:LEU108 3.7 56.2 1.0 CA A:GLY110 3.8 45.6 1.0 O B:HOH2073 3.9 69.0 1.0 N A:GLN109 3.9 58.6 1.0 CG A:GLN109 3.9 56.9 1.0 O3' B:GDP1003 4.1 48.9 1.0 C A:LEU108 4.2 59.5 1.0 C A:GLY193 4.3 60.9 1.0 CE A:LYS113 4.4 48.9 1.0 O A:GLN109 4.4 48.0 1.0 C A:ALA192 4.6 53.3 1.0 N A:ALA111 4.6 47.2 1.0 O1B A:GDP1003 4.6 42.9 1.0 C4' B:GDP1003 4.6 49.3 1.0 C A:GLY110 4.8 48.6 1.0 NH1 A:ARG141 4.8 58.0 1.0 O3A A:GDP1003 4.8 36.6 1.0 O A:GLY193 4.8 61.0 1.0 MG A:MG1002 4.9 50.4 1.0 O A:HOH1006 5.0 54.7 1.0

Fluorine binding site 5 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:46.0 occ:1.00 F1 B:ALF1001 0.0 46.0 1.0 AL B:ALF1001 1.8 38.5 1.0 F4 B:ALF1001 2.4 62.7 1.0 O B:HOH1004 2.5 49.1 1.0 F3 B:ALF1001 2.6 52.9 1.0 N B:GLY191 2.6 37.0 1.0 NZ B:LYS112 2.6 39.2 1.0 O2B B:GDP1003 2.6 54.7 1.0 O B:HOH1006 2.9 46.4 1.0 CA B:GLY191 3.0 36.4 1.0 CE B:LYS112 3.2 51.4 1.0 PB B:GDP1003 3.4 46.4 1.0 F2 B:ALF1001 3.6 40.7 1.0 O3B B:GDP1003 3.6 38.4 1.0 MG B:MG1002 3.6 43.7 1.0 O1B B:GDP1003 3.6 48.7 1.0 C B:ALA190 3.7 37.4 1.0 O B:THR189 3.9 42.4 1.0 CA B:ALA190 4.2 44.5 1.0 OD2 B:ASP136 4.3 40.7 1.0 O A:HOH2067 4.3 33.1 1.0 C B:GLY191 4.4 47.5 1.0 N B:GLY109 4.5 48.8 1.0 O B:VAL107 4.6 45.3 1.0 O B:ALA190 4.7 39.3 1.0 O B:HOH1007 4.7 51.9 1.0 CD B:LYS112 4.7 49.2 1.0 CA B:ASN108 4.7 35.4 1.0 O B:GLY191 4.8 37.4 1.0 O3' A:GDP1003 4.9 32.0 1.0 C B:THR189 4.9 47.8 1.0 O3A B:GDP1003 4.9 38.4 1.0

Fluorine binding site 6 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:40.7 occ:1.00 F2 B:ALF1001 0.0 40.7 1.0 AL B:ALF1001 1.8 38.5 1.0 O2B B:GDP1003 2.5 54.7 1.0 F3 B:ALF1001 2.5 52.9 1.0 F4 B:ALF1001 2.6 62.7 1.0 O A:HOH2039 2.6 41.5 1.0 NH1 B:ARG139 2.6 39.7 1.0 O B:HOH1004 2.7 49.1 1.0 O3' A:GDP1003 3.0 32.0 1.0 C3' A:GDP1003 3.2 34.4 1.0 CD B:ARG139 3.4 39.7 1.0 C4' A:GDP1003 3.5 41.1 1.0 F1 B:ALF1001 3.6 46.0 1.0 CZ B:ARG139 3.7 48.2 1.0 PB B:GDP1003 3.8 46.4 1.0 NE B:ARG139 4.0 37.7 1.0 C5' A:GDP1003 4.0 31.2 1.0 N B:GLY109 4.0 48.8 1.0 O B:HOH1005 4.1 43.9 1.0 NH2 A:ARG141 4.3 60.9 1.0 MG B:MG1002 4.3 43.7 1.0 O3A B:GDP1003 4.3 38.4 1.0 CA B:GLY109 4.3 37.6 1.0 O1B B:GDP1003 4.4 48.7 1.0 CG B:ARG139 4.4 36.8 1.0 C2' A:GDP1003 4.7 40.7 1.0 O2A B:GDP1003 4.7 37.8 1.0 O4' A:GDP1003 4.8 45.2 1.0 CB B:ARG139 4.8 36.3 1.0 OD2 B:ASP136 4.9 40.7 1.0 NH2 B:ARG139 4.9 48.7 1.0 O3B B:GDP1003 4.9 38.4 1.0 O5' A:GDP1003 4.9 31.5 1.0

Fluorine binding site 7 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:52.9 occ:1.00 F3 B:ALF1001 0.0 52.9 1.0 AL B:ALF1001 1.8 38.5 1.0 MG B:MG1002 2.2 43.7 1.0 O B:HOH1004 2.4 49.1 1.0 F2 B:ALF1001 2.5 40.7 1.0 F1 B:ALF1001 2.6 46.0 1.0 O2B B:GDP1003 2.6 54.7 1.0 O B:HOH1007 2.9 51.9 1.0 O B:HOH1005 2.9 43.9 1.0 NH1 B:ARG139 3.0 39.7 1.0 OD2 B:ASP136 3.1 40.7 1.0 O B:HOH1006 3.1 46.4 1.0 O1B B:GDP1003 3.2 48.7 1.0 PB B:GDP1003 3.5 46.4 1.0 F4 B:ALF1001 3.5 62.7 1.0 CZ B:ARG139 4.0 48.2 1.0 O A:HOH2039 4.2 41.5 1.0 CG B:ASP136 4.3 45.3 1.0 CD B:ARG139 4.3 39.7 1.0 OG1 B:THR113 4.3 63.0 1.0 NE B:ARG139 4.5 37.7 1.0 O3A B:GDP1003 4.6 38.4 1.0 O3B B:GDP1003 4.6 38.4 1.0 N B:GLY191 4.6 37.0 1.0 CB B:ARG139 4.8 36.3 1.0 NH2 B:ARG139 4.8 48.7 1.0 O2A B:GDP1003 4.8 37.8 1.0 NZ B:LYS112 4.8 39.2 1.0 O3' A:GDP1003 4.8 32.0 1.0 O B:THR189 4.9 42.4 1.0 CB B:ASP136 5.0 40.8 1.0

Fluorine binding site 8 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F1001 b:62.7 occ:1.00 F4 B:ALF1001 0.0 62.7 1.0 AL B:ALF1001 1.8 38.5 1.0 F1 B:ALF1001 2.4 46.0 1.0 O2B B:GDP1003 2.5 54.7 1.0 F2 B:ALF1001 2.6 40.7 1.0 N B:GLY109 2.7 48.8 1.0 O B:HOH1004 2.7 49.1 1.0 CA B:ASN108 2.9 35.4 1.0 O3' A:GDP1003 3.0 32.0 1.0 C B:ASN108 3.2 44.4 1.0 CB B:ASN108 3.4 34.2 1.0 F3 B:ALF1001 3.5 52.9 1.0 CA B:GLY191 3.7 36.4 1.0 C4' A:GDP1003 3.7 41.1 1.0 NZ B:LYS112 3.7 39.2 1.0 CA B:GLY109 3.8 37.6 1.0 OD1 B:ASN108 3.8 37.0 1.0 PB B:GDP1003 3.8 46.4 1.0 C3' A:GDP1003 3.9 34.4 1.0 CG B:ASN108 4.0 34.5 1.0 N B:GLY191 4.0 37.0 1.0 N B:ASN108 4.0 48.6 1.0 O3B B:GDP1003 4.1 38.4 1.0 O B:VAL107 4.2 45.3 1.0 O A:HOH2067 4.2 33.1 1.0 O A:HOH2039 4.4 41.5 1.0 O B:ASN108 4.4 48.6 1.0 O4' A:GDP1003 4.4 45.2 1.0 C B:VAL107 4.5 42.5 1.0 C B:GLY191 4.6 47.5 1.0 O1B B:GDP1003 4.7 48.7 1.0 O3A B:GDP1003 4.7 38.4 1.0 O B:GLY191 4.8 37.4 1.0 C5' A:GDP1003 4.8 31.2 1.0 C B:GLY109 4.9 50.3 1.0 C1' A:GDP1003 4.9 41.9 1.0 N B:VAL110 5.0 52.5 1.0 CE B:LYS112 5.0 51.4 1.0

Fluorine binding site 9 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ C:F1001 b:66.0 occ:1.00 F1 C:ALF1001 0.0 66.0 1.0 AL C:ALF1001 1.8 45.8 1.0 O C:HOH1006 2.1 42.3 1.0 F3 C:ALF1001 2.5 47.7 1.0 F4 C:ALF1001 2.5 50.7 1.0 O C:HOH1004 2.6 44.5 1.0 O2B C:GDP1003 2.6 54.3 1.0 MG C:MG1002 2.6 46.0 1.0 NZ C:LYS113 2.9 33.5 1.0 O1B C:GDP1003 3.0 41.2 1.0 PB C:GDP1003 3.1 38.2 1.0 O3B C:GDP1003 3.2 32.7 1.0 N C:GLY193 3.2 44.0 1.0 CE C:LYS113 3.2 36.8 1.0 F2 C:ALF1001 3.6 57.9 1.0 O C:THR191 3.6 44.5 1.0 O C:HOH1007 3.7 63.5 1.0 C C:ALA192 4.0 43.0 1.0 OD2 C:ASP138 4.0 57.9 1.0 CA C:ALA192 4.0 41.2 1.0 CA C:GLY193 4.0 49.8 1.0 O C:HOH1005 4.4 37.4 1.0 OG1 C:THR114 4.4 48.7 1.0 CB C:LYS113 4.6 39.3 1.0 O3A C:GDP1003 4.6 37.1 1.0 C C:THR191 4.6 54.0 1.0 CD C:LYS113 4.6 38.3 1.0 O C:HOH2068 4.7 66.7 1.0 N C:GLY110 4.8 45.9 1.0 N C:ALA192 4.9 41.8 1.0 CG C:LYS113 4.9 37.7 1.0

Fluorine binding site 10 out of 16 in the The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna within 5.0Å range: probe atom residue distance (Å) B Occ C:F1001 b:57.9 occ:1.00 F2 C:ALF1001 0.0 57.9 1.0 AL C:ALF1001 1.8 45.8 1.0 O C:HOH2068 2.3 66.7 1.0 F4 C:ALF1001 2.5 50.7 1.0 F3 C:ALF1001 2.5 47.7 1.0 O3' D:GDP1003 2.5 40.0 1.0 O2B C:GDP1003 2.6 54.3 1.0 O C:HOH1004 2.7 44.5 1.0 C3' D:GDP1003 3.2 40.4 1.0 C4' D:GDP1003 3.2 39.2 1.0 N C:GLY110 3.5 45.9 1.0 F1 C:ALF1001 3.6 66.0 1.0 NE C:ARG141 3.7 57.6 1.0 C5' D:GDP1003 3.9 40.1 1.0 O C:HOH2093 4.0 55.8 1.0 PB C:GDP1003 4.1 38.2 1.0 CA C:GLY110 4.1 40.9 1.0 CG C:ARG141 4.2 57.0 1.0 C C:GLN109 4.3 32.9 1.0 CA C:GLN109 4.3 41.1 1.0 NH2 C:ARG141 4.4 49.2 1.0 CB C:GLN109 4.4 40.6 1.0 O4' D:GDP1003 4.5 43.7 1.0 CD C:ARG141 4.5 57.6 1.0 CZ C:ARG141 4.5 57.4 1.0 MG C:MG1002 4.6 46.0 1.0 CB C:ARG141 4.6 54.2 1.0 C2' D:GDP1003 4.6 43.0 1.0 O1B C:GDP1003 4.7 41.2 1.0 CG C:GLN109 4.7 48.7 1.0 O3B C:GDP1003 4.8 32.7 1.0 O C:HOH1005 4.9 37.4 1.0 O3A C:GDP1003 4.9 37.1 1.0 C1' D:GDP1003 4.9 46.6 1.0 N C:GLY193 5.0 44.0 1.0

F.Voigts-Hoffmann, N.Schmitz, K.Shen, S.O.Shan, S.F.Ataide, N.Ban. The Structural Basis of Ftsy Recruitment and Gtpase Activation By Srp Rna Mol.Cell V. 52 643 2013.
ISSN: ISSN 1097-2765
PubMed: 24211265
DOI: 10.1016/J.MOLCEL.2013.10.005