Atomistry » Fluorine » PDB 4c6l-4cqj » 4cmo
Atomistry »
  Fluorine »
    PDB 4c6l-4cqj »
      4cmo »

Fluorine in PDB 4cmo: Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide

Enzymatic activity of Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide

All present enzymatic activity of Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide:
2.7.10.1;

Protein crystallography data

The structure of Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide, PDB code: 4cmo was solved by M.A.Mctigue, Y.L.Deng, W.Liu, A.Brooun, A.E.Stewart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.51 / 1.83
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.509, 57.557, 105.288, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide (pdb code 4cmo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide, PDB code: 4cmo:

Fluorine binding site 1 out of 1 in 4cmo

Go back to Fluorine Binding Sites List in 4cmo
Fluorine binding site 1 out of 1 in the Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Human Anaplastic Lymphoma Kinase in Complex with the Inhibitor 2-((1R)-1-((3-Amino-6-(2- Methoxypyridin- -Yl)Pyrazin-2-Yl)Oxy)Ethyl)-4-Fluoro-N-Methylbenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2402

b:25.2
occ:1.00
 F16 A:YPW2402 0.0 25.2 1.0
C14 A:YPW2402 1.3 22.2 1.0
C13 A:YPW2402 2.4 25.2 1.0
C15 A:YPW2402 2.4 24.0 1.0
C A:GLY1269 3.0 22.4 1.0
N A:ASP1270 3.2 21.6 1.0
CA A:GLY1269 3.2 22.0 1.0
O A:ASN1254 3.3 21.2 1.0
O A:GLY1269 3.4 23.3 1.0
C A:ASN1254 3.5 20.6 1.0
CB A:ASP1270 3.6 25.1 1.0
CG A:LEU1256 3.6 21.5 1.0
C12 A:YPW2402 3.7 24.7 1.0
C10 A:YPW2402 3.7 22.9 1.0
N A:GLY1269 3.8 20.0 1.0
CD1 A:LEU1256 3.8 22.0 1.0
CA A:ASN1254 3.9 21.1 1.0
CA A:ASP1270 3.9 22.4 1.0
CD2 A:LEU1256 4.0 22.5 1.0
C11 A:YPW2402 4.2 25.6 1.0
N A:CYS1255 4.2 19.8 1.0
O A:ARG1253 4.3 21.0 1.0
C A:CYS1255 4.6 20.1 1.0
CA A:CYS1255 4.7 20.1 1.0
CB A:ASN1254 4.8 19.5 1.0
O A:CYS1255 4.8 20.3 1.0
CG A:ASP1270 4.9 28.5 1.0
N A:ASN1254 4.9 20.5 1.0
C9 A:YPW2402 4.9 22.2 1.0
CB A:LEU1256 4.9 20.7 1.0
N A:LEU1256 5.0 20.3 1.0

Reference:

T.W.Johnson, P.F.Richardson, S.Bailey, A.Brooun, B.J.Burke, M.R.Collins, J.J.Cui, J.G.Deal, Y.L.Deng, D.M.Dinh, L.D.Engstrom, M.He, J.E.Hoffman, R.L.Hoffman, Q.Huang, J.Kath, R.S.Kania, H.Lam, J.L.Lam, P.T.Le, L.Lingardo, W.Liu, M.A.Mctigue, C.L.Palmer, N.W.Sach, T.Smeal, G.L.Smith, A.E.Stewart, S.L.Timofeevski, H.Zhu, J.Zhu, H.Y.Zou, M.P.Edwards. Discovery of (10R)-7-Amino-12-Fluoro-2,10,16-Trimethyl-15- Oxo-10,15,16,17-Tetrahydro-2H-8,4-(Metheno)Pyrazolo[4,3- H][2,5,11]Benzoxadiazacyclotetradecine-3-Carbonitrile (Pf- 06463922), A Macrocyclic Inhibitor of Alk/ROS1 with Pre- Clinical Brain Exposure and Broad Spectrum Potency Against Alk-Resistant Mutations. J.Med.Chem. V. 57 4720 2014.
ISSN: ISSN 0022-2623
PubMed: 24819116
DOI: 10.1021/JM500261Q
Page generated: Thu Aug 1 00:45:24 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy